Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09008 * 109.47203 * 55.02471 * 3 2 1 5 5 C 1.50703 * 109.47449 * 175.02389 * 3 2 1 6 6 H 1.07998 * 120.00216 * 119.99635 * 5 3 2 7 7 C 1.37879 * 119.99694 * 300.00147 * 5 3 2 8 8 N 1.31513 * 120.00489 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47193 * 59.99522 * 9 7 5 11 11 H 1.48496 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46748 * 300.00129 * 9 7 5 13 13 N 1.46905 * 109.47110 * 295.02335 * 3 2 1 14 14 C 1.46896 * 110.99759 * 155.98618 * 13 3 2 15 15 H 1.09005 * 109.47737 * 34.73602 * 14 13 3 16 16 C 1.52996 * 109.47574 * 274.72961 * 14 13 3 17 17 C 1.53008 * 109.46975 * 154.73280 * 14 13 3 18 18 C 1.52997 * 109.46778 * 294.99987 * 17 14 13 19 19 C 1.50707 * 109.46975 * 179.97438 * 18 17 14 20 20 C 1.38234 * 120.00149 * 269.73173 * 19 18 17 21 21 C 1.38231 * 119.99813 * 179.78966 * 20 19 18 22 22 C 1.38231 * 120.00233 * 0.45737 * 21 20 19 23 23 C 1.50703 * 120.00112 * 179.79357 * 22 21 20 24 24 C 1.38233 * 119.99994 * 359.77184 * 22 21 20 25 25 C 1.38230 * 119.99908 * 90.00064 * 19 18 17 26 26 H 1.08994 * 109.47156 * 295.43539 * 1 2 3 27 27 H 1.09006 * 109.46863 * 55.43310 * 1 2 3 28 28 H 1.08998 * 109.47033 * 175.43241 * 1 2 3 29 29 H 1.09002 * 109.46653 * 119.99712 * 2 1 3 30 30 H 1.08998 * 109.47459 * 240.00008 * 2 1 3 31 31 H 0.96994 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99953 * 279.93788 * 13 3 2 33 33 H 1.09005 * 109.46938 * 64.95195 * 16 14 13 34 34 H 1.09000 * 109.47328 * 184.95524 * 16 14 13 35 35 H 1.09005 * 109.47295 * 304.95684 * 16 14 13 36 36 H 1.09004 * 109.47002 * 54.99671 * 17 14 13 37 37 H 1.08997 * 109.47225 * 174.99877 * 17 14 13 38 38 H 1.08997 * 109.47621 * 299.99996 * 18 17 14 39 39 H 1.08997 * 109.47332 * 59.99955 * 18 17 14 40 40 H 1.07999 * 119.99693 * 359.97438 * 20 19 18 41 41 H 1.08010 * 119.99788 * 180.25102 * 21 20 19 42 42 H 1.09002 * 109.47237 * 269.98036 * 23 22 21 43 43 H 1.09000 * 109.46755 * 29.97836 * 23 22 21 44 44 H 1.09000 * 109.47185 * 149.97711 * 23 22 21 45 45 H 1.08004 * 120.00029 * 180.02562 * 24 22 21 46 46 H 1.08005 * 120.00450 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4443 0.1232 6 1 4.1470 1.8890 -0.6531 7 6 4.1437 0.8782 1.2271 8 7 3.4071 0.3371 2.1727 9 14 6.0055 0.8799 1.3796 10 1 6.5010 2.2798 1.3792 11 1 6.3988 0.2164 2.6486 12 1 6.5967 0.1452 0.2324 13 7 1.6509 2.0994 -1.2550 14 6 1.5949 3.5580 -1.0903 15 1 2.3718 3.8753 -0.3946 16 6 0.2240 3.9570 -0.5404 17 6 1.8170 4.2332 -2.4452 18 6 3.2349 3.9355 -2.9370 19 6 3.4535 4.6000 -4.2719 20 6 3.1602 3.9197 -5.4389 21 6 3.3566 4.5308 -6.6631 22 6 3.8552 5.8188 -6.7207 23 6 4.0737 6.4833 -8.0555 24 6 4.1530 6.4974 -5.5538 25 6 3.9525 5.8878 -4.3294 26 1 -0.3633 0.4413 0.9280 27 1 -0.3633 0.5831 -0.8463 28 1 -0.3633 -1.0244 -0.0818 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.8304 -0.0607 2.9494 32 1 2.2751 1.8440 -2.0055 33 1 0.1018 3.5479 0.4626 34 1 0.1506 5.0438 -0.5009 35 1 -0.5570 3.5635 -1.1910 36 1 1.0945 3.8490 -3.1654 37 1 1.6876 5.3104 -2.3400 38 1 3.9574 4.3196 -2.2169 39 1 3.3643 2.8584 -3.0422 40 1 2.7748 2.9118 -5.3941 41 1 3.1236 4.0007 -7.5749 42 1 5.0841 6.2718 -8.4056 43 1 3.3517 6.0982 -8.7755 44 1 3.9434 7.5604 -7.9508 45 1 4.5422 7.5039 -5.5987 46 1 4.1854 6.4180 -3.4177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136960282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -22.982164 kcal Electronic energy + Delta-G solvation = -21320.005750 eV Core-core repulsion = 18400.368494 eV Total energy + Delta-G solvation = -2919.637255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41061 -38.79934 -36.17218 -34.47645 -33.39422 -31.77075 -31.25300 -30.37276 -27.84600 -27.25155 -24.69907 -24.00148 -23.56455 -21.50884 -21.33939 -20.96699 -18.65829 -17.01140 -16.95784 -16.49616 -16.19976 -15.90972 -15.51244 -15.15863 -14.66763 -14.57276 -14.33989 -14.19213 -13.96537 -13.78428 -13.28941 -13.25141 -13.09322 -13.02978 -12.93880 -12.81453 -12.54214 -12.47697 -12.17043 -12.10391 -11.99644 -11.84587 -11.63293 -11.46833 -11.38669 -11.19651 -10.89882 -10.42581 -9.78906 -9.30893 -8.98022 -8.02798 -6.24825 0.46596 0.53832 1.37656 1.38435 1.45556 2.40157 2.86899 3.16261 3.73301 3.80618 3.92930 4.10570 4.19548 4.21984 4.26296 4.38679 4.57188 4.62923 4.64795 4.73252 4.79759 4.82189 4.86713 4.88741 4.91054 4.93274 5.00653 5.02830 5.13333 5.21690 5.24834 5.28670 5.33506 5.38322 5.45492 5.49877 5.56746 5.58396 5.68932 5.74016 5.81084 5.83036 6.15610 6.18604 6.25831 6.46147 6.90787 7.08490 7.46670 8.92891 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004251 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.579546 B = 6584.398735 C = 7465.263453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.225 3.775 4 H -0.001 1.001 5 C -0.555 4.555 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.084 3.916 15 H 0.015 0.985 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.078 4.078 19 C -0.091 4.091 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.104 4.104 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.128 4.128 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.138 0.862 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 11.141 -16.618 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.017 0.983 5 C -0.594 4.594 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.026 4.026 15 H 0.033 0.967 16 C -0.185 4.185 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.091 4.091 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.167 4.167 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.156 0.844 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.844 10.967 -16.334 19.760 hybrid contribution 2.090 -0.176 0.926 2.293 sum 0.246 10.791 -15.408 18.813 Atomic orbital electron populations 1.21563 0.96466 0.99812 1.00386 1.21365 0.94395 0.98649 0.99824 1.18880 0.91251 0.91283 0.86976 0.98319 1.22175 0.94224 1.37626 1.05398 0.93173 1.25622 1.01696 0.94967 0.95623 1.69998 1.36308 1.39000 1.09789 0.85833 0.81595 0.78146 0.77376 1.20150 1.20963 1.19784 1.60940 1.55592 1.06350 1.07757 1.21421 0.96416 0.88851 0.95910 0.96653 1.21695 0.96681 1.00344 0.99816 1.21569 0.95534 1.00402 0.95571 1.20561 0.97648 0.99959 0.93395 1.19949 0.99194 0.94975 0.94936 1.21236 1.00441 1.00360 0.92321 1.21281 1.00040 0.95173 0.97903 1.20268 0.98813 0.94713 0.96561 1.20810 1.02751 1.00701 0.92404 1.21273 1.00701 1.00704 0.91749 1.21221 0.99979 0.94760 0.98618 0.95293 0.92135 0.93750 0.92301 0.95500 0.93007 0.85378 0.95190 0.91464 0.91922 0.91029 0.90867 0.92472 0.91893 0.85750 0.84411 0.90580 0.90696 0.90674 0.84375 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.85 71.98 0.71 -4.41 16 2 C -0.10 -5.04 5.45 30.59 0.17 -4.87 16 3 C 0.23 11.23 1.79 44.17 0.08 11.31 16 4 H 0.00 -0.06 7.18 -2.38 -0.02 -0.08 16 5 C -0.55 -30.10 8.22 25.60 0.21 -29.89 16 6 H 0.05 2.68 7.76 -2.91 -0.02 2.66 16 7 C 0.02 1.15 5.29 84.66 0.45 1.59 16 8 N -0.91 -52.67 11.29 21.45 0.24 -52.43 16 9 Si 0.94 43.84 29.54 68.60 2.03 45.86 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.68 -27.77 5.43 -473.29 -2.57 -30.34 16 14 C 0.08 3.09 2.45 44.92 0.11 3.20 16 15 H 0.02 0.66 7.60 -2.38 -0.02 0.64 16 16 C -0.13 -4.22 9.38 71.98 0.68 -3.55 16 17 C -0.09 -2.74 4.79 30.60 0.15 -2.59 16 18 C -0.08 -2.35 5.18 29.85 0.15 -2.20 16 19 C -0.09 -2.43 5.13 -19.87 -0.10 -2.53 16 20 C -0.13 -3.12 9.70 22.27 0.22 -2.90 16 21 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 22 C -0.10 -2.04 5.88 -19.87 -0.12 -2.16 16 23 C -0.11 -1.44 10.01 71.24 0.71 -0.72 16 24 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 25 C -0.13 -3.12 9.70 22.27 0.22 -2.91 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 2.35 7.63 -2.38 -0.02 2.33 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 3.24 5.95 -2.39 -0.01 3.22 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.33 13.32 6.18 -89.69 -0.55 12.77 16 33 H 0.03 1.11 7.50 -2.38 -0.02 1.09 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16 39 H 0.06 2.06 6.37 -2.39 -0.02 2.04 16 40 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 41 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 44 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -59.85 365.91 4.12 -55.73 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.37 Total: 28.69 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.06 Total: -47.51 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -2.33 Total: -82.77 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -59.85 4.12 -55.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136960282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -59.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds