Wall clock time and date at job start Mon Mar 30 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00107 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99714 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99765 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47051 * 60.00574 * 11 9 7 13 13 H 1.48501 * 109.46677 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47226 * 299.99990 * 11 9 7 15 15 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 16 16 C 1.38238 * 119.99746 * 79.73055 * 15 2 1 17 17 C 1.38233 * 119.99710 * 179.78730 * 16 15 2 18 18 C 1.38236 * 119.99804 * 0.44000 * 17 16 15 19 19 C 1.50702 * 119.99971 * 179.83333 * 18 17 16 20 20 C 1.52998 * 109.47352 * 239.98110 * 19 18 17 21 21 C 1.53008 * 109.46957 * 359.97438 * 19 18 17 22 22 C 1.52996 * 109.47339 * 119.97343 * 19 18 17 23 23 C 1.38233 * 120.00375 * 359.80870 * 18 17 16 24 24 C 1.38230 * 119.99859 * 359.97438 * 23 18 17 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 28 28 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 31 31 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 32 32 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 33 33 H 0.97007 * 120.00038 * 179.97438 * 10 9 7 34 34 H 1.07997 * 119.99876 * 359.97438 * 16 15 2 35 35 H 1.08004 * 119.99974 * 180.26989 * 17 16 15 36 36 H 1.08999 * 109.47555 * 59.99855 * 20 19 18 37 37 H 1.09001 * 109.47179 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.46853 * 299.99831 * 20 19 18 39 39 H 1.09000 * 109.47497 * 60.00070 * 21 19 18 40 40 H 1.09001 * 109.47031 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.47124 * 299.99638 * 21 19 18 42 42 H 1.09003 * 109.46660 * 60.00295 * 22 19 18 43 43 H 1.09001 * 109.47438 * 180.02562 * 22 19 18 44 44 H 1.09004 * 109.47468 * 300.00717 * 22 19 18 45 45 H 1.08001 * 120.00201 * 179.97438 * 23 18 17 46 46 H 1.08001 * 120.00329 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 2.6589 0.4055 -4.7518 8 1 2.3631 1.4377 -4.6361 9 6 3.0950 -0.0535 -5.9766 10 7 3.4548 -1.3105 -6.1176 11 14 3.1734 1.1098 -7.4360 12 1 4.0943 2.2325 -7.1251 13 1 3.6711 0.3763 -8.6274 14 1 1.8169 1.6452 -7.7158 15 6 2.0324 -0.7104 1.2305 16 6 2.0615 -2.0920 1.2674 17 6 2.5264 -2.7436 2.3944 18 6 2.9536 -2.0137 3.4879 19 6 3.4569 -2.7241 4.7180 20 6 2.5863 -2.3454 5.9178 21 6 3.3900 -4.2366 4.4967 22 6 4.9052 -2.3118 4.9883 23 6 2.9196 -0.6322 3.4529 24 6 2.4589 0.0194 2.3242 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 3.5904 -0.9271 -3.3691 32 1 1.9183 -1.3564 -3.8030 33 1 3.7613 -1.6336 -6.9794 34 1 1.7239 -2.6622 0.4146 35 1 2.5533 -3.8230 2.4216 36 1 1.5545 -2.6392 5.7252 37 1 2.9507 -2.8589 6.8076 38 1 2.6339 -1.2679 6.0754 39 1 4.0102 -4.5066 3.6419 40 1 3.7545 -4.7504 5.3862 41 1 2.3582 -4.5304 4.3041 42 1 4.9528 -1.2343 5.1460 43 1 5.2695 -2.8260 5.8778 44 1 5.5255 -2.5816 4.1335 45 1 3.2530 -0.0620 4.3074 46 1 2.4320 1.0987 2.2970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154408554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:10 Heat of formation + Delta-G solvation = -7.016869 kcal Electronic energy + Delta-G solvation = -20842.213247 eV Core-core repulsion = 17923.268298 eV Total energy + Delta-G solvation = -2918.944948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95849 -37.54878 -35.58022 -33.24006 -31.34242 -30.98695 -28.85988 -27.75689 -27.48848 -27.42638 -24.33780 -23.33919 -22.24000 -20.63325 -20.50666 -19.13183 -16.66203 -16.30725 -15.35013 -15.13229 -14.70984 -14.43521 -14.38549 -14.22746 -14.03031 -13.58341 -13.29828 -13.15675 -12.79047 -12.59028 -12.36673 -12.29193 -12.07819 -11.90029 -11.81576 -11.57363 -11.35868 -11.13369 -11.08469 -10.92653 -10.89209 -10.63928 -10.45903 -10.43425 -10.00949 -9.36980 -9.15193 -8.73586 -8.36025 -8.32294 -7.77466 -5.98320 -4.00953 1.50950 1.58986 3.34209 3.38497 3.40849 3.88879 4.44426 4.48261 4.60769 4.74541 4.83855 5.05972 5.11316 5.15077 5.16732 5.36218 5.37552 5.40154 5.42207 5.46405 5.57238 5.58995 5.65962 5.68266 5.73968 5.81790 5.87261 5.90631 5.96344 6.09905 6.12865 6.15118 6.19245 6.28493 6.37467 6.44774 6.63904 6.74392 6.84421 6.99644 7.17339 7.51764 7.74337 7.84444 7.97172 8.10377 8.44993 9.06168 9.62642 11.13085 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030930 B = 0.002930 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.055676 B = 9552.714010 C = 9901.568299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.117 3.883 3 H 0.081 0.919 4 N -0.682 5.682 5 C 0.066 3.934 6 C 0.026 3.974 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.060 4.060 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.082 4.082 19 C -0.028 4.028 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.117 4.117 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.336 0.664 29 H 0.016 0.984 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 -2.501 23.815 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.099 0.901 4 N -0.313 5.313 5 C -0.062 4.062 6 C -0.011 4.011 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.061 4.061 16 C -0.113 4.113 17 C -0.140 4.140 18 C -0.082 4.082 19 C -0.028 4.028 20 C -0.194 4.194 21 C -0.201 4.201 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.136 4.136 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.133 0.867 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.123 -2.542 23.825 24.055 hybrid contribution -0.850 0.738 -1.173 1.627 sum -2.974 -1.804 22.652 22.918 Atomic orbital electron populations 1.22471 0.96793 1.02139 1.02002 1.20473 0.92280 0.97414 0.89138 0.90061 1.60708 1.56366 1.10139 1.04039 1.22188 0.98185 0.95268 0.90509 1.19055 0.97004 0.95258 0.89828 1.21142 1.44036 0.96368 0.94550 0.92835 1.25000 0.95389 0.95104 0.98856 1.69964 1.44394 1.14364 1.24532 0.86650 0.78369 0.80941 0.81979 1.20222 1.21271 1.20307 1.19878 0.97823 0.93873 0.94524 1.20945 0.98888 0.94075 0.97367 1.21136 0.99884 0.99838 0.93174 1.19693 0.99923 0.93490 0.95077 1.19465 0.95471 0.95004 0.92898 1.21878 0.99513 1.01409 0.96602 1.21959 1.02003 0.94387 1.01736 1.21887 0.94841 1.01331 1.01469 1.20814 1.00926 0.93838 0.97980 1.20947 0.99848 0.99478 0.93317 0.92126 0.92470 0.92500 0.84605 0.96554 0.92392 0.95668 0.96865 0.92942 0.86100 0.86034 0.92582 0.92614 0.92541 0.92125 0.92635 0.92309 0.92512 0.92621 0.92363 0.86720 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.14 37.16 0.34 -1.94 16 2 C 0.12 1.75 2.79 -68.86 -0.19 1.56 16 3 H 0.08 1.23 7.66 -51.93 -0.40 0.83 16 4 N -0.68 -12.26 5.71 -107.94 -0.62 -12.88 16 5 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 6 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 11 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.06 -0.85 4.95 -104.62 -0.52 -1.37 16 16 C -0.09 -1.30 9.32 -39.58 -0.37 -1.67 16 17 C -0.12 -1.50 8.98 -39.58 -0.36 -1.86 16 18 C -0.08 -0.93 4.76 -104.62 -0.50 -1.43 16 19 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 20 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 21 C -0.14 -1.19 7.13 37.16 0.27 -0.92 16 22 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 23 C -0.12 -1.36 8.71 -39.59 -0.34 -1.71 16 24 C -0.12 -1.50 9.67 -39.58 -0.38 -1.88 16 25 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.34 5.81 7.82 -39.29 -0.31 5.50 16 29 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 30 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.12 1.64 7.26 -52.49 -0.38 1.26 16 35 H 0.12 1.30 5.90 -52.48 -0.31 0.99 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.44 7.39 -51.93 -0.38 0.05 16 39 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 42 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.11 1.11 7.10 -52.49 -0.37 0.74 16 46 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -30.38 363.80 -9.84 -40.22 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.27 Total: 1.81 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.15 Total: -25.02 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.12 Total: -39.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.38 -9.84 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154408554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.203 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds