Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86804 * 120.00132 * 2 1 4 4 H 1.48501 * 109.46864 * 270.00137 * 3 2 1 5 5 H 1.48503 * 109.46855 * 29.99922 * 3 2 1 6 6 H 1.48493 * 109.47297 * 150.00084 * 3 2 1 7 7 C 1.40152 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.41415 * 119.99731 * 359.97438 * 7 2 1 10 10 O 1.21836 * 119.99832 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99992 * 180.02562 * 9 7 2 12 12 C 1.38794 * 119.99791 * 185.52756 * 11 9 7 13 13 C 1.38327 * 120.19866 * 24.90872 * 12 11 9 14 14 C 1.38863 * 120.82209 * 180.18788 * 13 12 11 15 15 C 1.37607 * 120.83572 * 0.13842 * 14 13 12 16 16 Cl 1.73595 * 120.08490 * 179.97438 * 15 14 13 17 17 C 1.40609 * 119.83499 * 359.90615 * 15 14 13 18 18 C 1.40736 * 121.24505 * 180.02562 * 17 15 14 19 19 C 1.36715 * 118.15887 * 179.97438 * 18 17 15 20 20 C 1.39217 * 119.88516 * 359.97438 * 19 18 17 21 21 N 1.31198 * 121.71033 * 359.97438 * 20 19 18 22 22 C 1.33442 * 121.36671 * 0.02562 * 21 20 19 23 23 H 0.96999 * 120.00423 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99881 * 5.51845 * 11 9 7 25 25 H 1.07997 * 119.59181 * 0.25692 * 13 12 11 26 26 H 1.08000 * 119.58251 * 180.02562 * 14 13 12 27 27 H 1.08003 * 120.92469 * 359.95684 * 18 17 15 28 28 H 1.08000 * 120.05701 * 179.97438 * 19 18 17 29 29 H 1.08006 * 119.14157 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0464 -1.4001 5 1 1.4376 2.6527 0.7000 6 1 3.5378 1.4402 0.7000 7 6 2.0070 -1.2137 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.3000 -2.4384 -0.0005 10 8 0.0816 -2.4384 0.0004 11 7 1.9739 -3.6056 -0.0005 12 6 1.2847 -4.8048 -0.1163 13 6 0.0444 -4.8383 -0.7278 14 6 -0.6581 -6.0301 -0.8472 15 6 -0.1391 -7.2068 -0.3577 16 17 -1.0343 -8.6856 -0.5169 17 6 1.1189 -7.2088 0.2705 18 6 1.6780 -8.3950 0.7812 19 6 2.9053 -8.3245 1.3793 20 6 3.5644 -7.1014 1.4681 21 7 3.0391 -5.9986 0.9894 22 6 1.8449 -5.9996 0.3941 23 1 -0.4851 0.8400 0.0004 24 1 2.9405 -3.6075 0.0802 25 1 -0.3825 -3.9263 -1.1182 26 1 -1.6248 -6.0333 -1.3286 27 1 1.1520 -9.3351 0.7031 28 1 3.3628 -9.2160 1.7822 29 1 4.5337 -7.0595 1.9428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158618629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = 9.988935 kcal Electronic energy + Delta-G solvation = -18086.655295 eV Core-core repulsion = 15000.398650 eV Total energy + Delta-G solvation = -3086.256646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60576 -38.30225 -36.78869 -35.71304 -33.95044 -32.73840 -31.98189 -30.27234 -28.66197 -26.46464 -24.02734 -23.40781 -21.95888 -19.93572 -18.30713 -17.66199 -16.88960 -16.48280 -15.64861 -15.30482 -14.60240 -14.41470 -14.16059 -13.65904 -13.19421 -12.95729 -12.83548 -12.65214 -12.39394 -11.98599 -11.46068 -11.38212 -11.21726 -10.84012 -10.75598 -10.55436 -10.41290 -10.16232 -9.39398 -9.21237 -8.84733 -8.55175 -7.82153 -6.83318 -6.49049 -5.02558 0.67745 1.09442 2.21334 2.43704 2.99853 3.07933 3.11630 3.25942 3.89318 4.18698 4.37732 4.45353 4.52196 4.89194 5.04612 5.10431 5.21019 5.54712 5.57301 5.66064 5.88066 6.05980 6.16825 6.35429 6.53755 6.72807 6.81100 7.10865 7.18776 7.71664 7.86821 7.95878 8.17882 8.67999 9.10984 10.23497 10.42360 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.004911 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.029283 B = 5699.860706 C = 6646.383303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.087 3.913 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.535 3.465 10 O -0.562 6.562 11 N -0.669 5.669 12 C 0.239 3.761 13 C -0.157 4.157 14 C -0.047 4.047 15 C -0.095 4.095 16 Cl -0.086 7.086 17 C -0.059 4.059 18 C -0.072 4.072 19 C -0.168 4.168 20 C 0.103 3.897 21 N -0.455 5.455 22 C 0.089 3.911 23 H 0.275 0.725 24 H 0.403 0.597 25 H 0.169 0.831 26 H 0.132 0.868 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -12.784 0.142 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.346 3.654 10 O -0.446 6.446 11 N -0.306 5.306 12 C 0.133 3.867 13 C -0.181 4.181 14 C -0.067 4.067 15 C -0.124 4.124 16 Cl -0.058 7.058 17 C -0.062 4.062 18 C -0.098 4.098 19 C -0.188 4.188 20 C -0.070 4.070 21 N -0.162 5.162 22 C -0.036 4.036 23 H 0.086 0.914 24 H 0.238 0.762 25 H 0.187 0.813 26 H 0.150 0.850 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.129 -11.729 0.153 12.140 hybrid contribution 0.415 -0.297 0.119 0.524 sum 3.544 -12.026 0.271 12.541 Atomic orbital electron populations 1.69988 1.07342 1.28232 1.31266 1.25787 0.94713 1.00842 0.92381 0.86224 0.80230 0.80415 0.79187 1.19358 1.20129 1.18561 1.20019 0.94644 0.89852 1.51853 0.90839 1.17078 0.87681 0.81957 0.78700 1.90625 1.13394 1.85593 1.54976 1.44169 1.10734 1.04026 1.71638 1.17943 0.92640 0.85118 0.91015 1.21586 0.95226 0.99116 1.02164 1.20994 0.99367 0.90162 0.96178 1.20534 0.94283 0.87446 1.10178 1.98294 1.74825 1.35699 1.96971 1.18223 0.94040 0.94199 0.99775 1.21421 0.95318 0.97494 0.95574 1.21794 0.96195 0.99475 1.01329 1.22760 0.99525 0.87700 0.97005 1.67785 1.10198 1.30176 1.08053 1.18599 0.92368 0.92088 1.00568 0.91390 0.76215 0.81348 0.85025 0.84522 0.84930 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.61 11.72 55.56 0.65 -19.96 15 2 C 0.09 2.25 5.50 -17.35 -0.10 2.16 15 3 Si 0.92 18.82 29.56 -169.99 -5.02 13.80 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.53 -14.06 9.30 -37.66 -0.35 -14.41 15 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 9 C 0.53 14.48 7.35 -15.05 -0.11 14.37 15 10 O -0.56 -16.77 12.02 5.07 0.06 -16.71 15 11 N -0.67 -15.34 5.23 -12.25 -0.06 -15.40 15 12 C 0.24 5.14 6.47 -83.44 -0.54 4.60 15 13 C -0.16 -3.29 8.68 -39.32 -0.34 -3.63 15 14 C -0.05 -0.83 9.78 -39.58 -0.39 -1.22 15 15 C -0.10 -1.58 6.36 -38.92 -0.25 -1.83 15 16 Cl -0.09 -1.19 27.53 -51.86 -1.43 -2.62 15 17 C -0.06 -1.01 5.74 -106.78 -0.61 -1.62 15 18 C -0.07 -0.99 9.53 -39.19 -0.37 -1.36 15 19 C -0.17 -2.02 10.03 -39.77 -0.40 -2.42 15 20 C 0.10 1.40 11.15 -17.46 -0.19 1.21 15 21 N -0.45 -8.02 9.76 -10.83 -0.11 -8.12 15 22 C 0.09 1.70 6.62 -84.66 -0.56 1.14 15 23 H 0.28 6.89 8.29 -40.82 -0.34 6.55 15 24 H 0.40 8.41 8.31 -40.82 -0.34 8.08 15 25 H 0.17 3.99 5.74 -52.49 -0.30 3.69 15 26 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 27 H 0.14 1.61 7.04 -52.48 -0.37 1.24 15 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 29 H 0.16 1.55 8.06 -52.48 -0.42 1.13 15 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -30.78 275.04 -7.80 -38.58 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -1.82 Total: 9.30 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -4.21 Total: -3.01 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.48 Total: -43.48 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.06 Total: -16.71 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.43 Total: -2.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.78 -7.80 -38.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158618629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.570 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds