Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47269 * 2 1 4 4 C 1.46902 * 110.99561 * 304.15742 * 3 2 1 5 5 C 1.50698 * 109.47266 * 288.20461 * 4 3 2 6 6 C 1.38237 * 120.00087 * 96.00457 * 5 4 3 7 7 C 1.38238 * 120.00090 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99722 * 359.95678 * 7 6 5 9 9 C 1.38238 * 120.00295 * 0.27851 * 8 7 6 10 10 C 1.38234 * 119.99852 * 359.50778 * 9 8 7 11 11 C 1.46891 * 111.00101 * 68.11289 * 3 2 1 12 12 C 1.52997 * 109.47413 * 85.42849 * 11 3 2 13 13 C 1.53005 * 109.47047 * 294.88628 * 12 11 3 14 14 C 1.53005 * 109.47019 * 54.88251 * 12 11 3 15 15 C 1.52997 * 109.47504 * 174.88436 * 12 11 3 16 16 C 1.50702 * 109.47392 * 180.02562 * 15 12 11 17 17 H 1.08002 * 119.99728 * 0.02562 * 16 15 12 18 18 C 1.37868 * 120.00224 * 179.97438 * 16 15 12 19 19 N 1.31522 * 120.00085 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00257 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46907 * 90.00139 * 20 18 16 22 22 H 1.48494 * 109.47364 * 210.00235 * 20 18 16 23 23 H 1.48495 * 109.46870 * 330.00513 * 20 18 16 24 24 H 1.09006 * 109.47138 * 64.47529 * 1 2 3 25 25 H 1.08993 * 109.47454 * 184.48106 * 1 2 3 26 26 H 1.09008 * 109.47040 * 304.48228 * 1 2 3 27 27 H 1.08994 * 109.46892 * 239.99831 * 2 1 3 28 28 H 1.09002 * 109.46941 * 119.99866 * 2 1 3 29 29 H 1.09000 * 109.46691 * 168.20787 * 4 3 2 30 30 H 1.09003 * 109.47364 * 48.20730 * 4 3 2 31 31 H 1.07995 * 119.99548 * 359.97438 * 6 5 4 32 32 H 1.07990 * 120.00150 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.99861 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.00189 * 179.72606 * 9 8 7 35 35 H 1.07994 * 120.00195 * 180.25304 * 10 9 8 36 36 H 1.08999 * 109.47054 * 205.42873 * 11 3 2 37 37 H 1.09005 * 109.47247 * 325.42553 * 11 3 2 38 38 H 1.09002 * 109.46992 * 74.29595 * 13 12 11 39 39 H 1.09000 * 109.46802 * 194.29278 * 13 12 11 40 40 H 1.08993 * 109.46877 * 314.29540 * 13 12 11 41 41 H 1.08997 * 109.47235 * 60.00261 * 14 12 11 42 42 H 1.09002 * 109.47262 * 180.02562 * 14 12 11 43 43 H 1.09004 * 109.47135 * 300.00134 * 14 12 11 44 44 H 1.08997 * 109.46937 * 299.99854 * 15 12 11 45 45 H 1.08999 * 109.47263 * 60.00178 * 15 12 11 46 46 H 0.96997 * 119.99600 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4692 2.1379 -1.1349 5 6 2.1115 1.6622 -2.4124 6 6 1.4808 0.7090 -3.1899 7 6 2.0698 0.2729 -4.3621 8 6 3.2891 0.7908 -4.7571 9 6 3.9222 1.7405 -3.9771 10 6 3.3311 2.1797 -2.8073 11 6 1.7132 2.0517 1.2725 12 6 2.8145 1.7424 2.2886 13 6 2.8089 0.2459 2.6070 14 6 4.1729 2.1343 1.7036 15 6 2.5630 2.5376 3.5712 16 6 3.6481 2.2334 4.5718 17 1 4.4383 1.5423 4.3181 18 6 3.6326 2.8381 5.8107 19 7 2.6706 3.6801 6.1196 20 14 4.9772 2.4605 7.0513 21 1 6.0981 3.4182 6.8733 22 1 4.4317 2.5871 8.4266 23 1 5.4709 1.0760 6.8401 24 1 -0.3634 0.4428 -0.9274 25 1 -0.3634 -1.0244 0.0803 26 1 -0.3633 0.5819 0.8472 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6731 3.2001 -0.9994 30 1 0.3922 1.9786 -1.1885 31 1 0.5279 0.3050 -2.8816 32 1 1.5773 -0.4720 -4.9693 33 1 3.7495 0.4499 -5.6727 34 1 4.8769 2.1418 -4.2835 35 1 3.8237 2.9246 -2.2000 36 1 1.6571 3.1287 1.1141 37 1 0.7573 1.6900 1.6513 38 1 3.2323 -0.3057 1.7676 39 1 3.4056 0.0623 3.5005 40 1 1.7848 -0.0850 2.7796 41 1 4.1769 3.2004 1.4767 42 1 4.9575 1.9135 2.4273 43 1 4.3520 1.5677 0.7898 44 1 2.5670 3.6037 3.3444 45 1 1.5953 2.2585 3.9880 46 1 2.6596 4.1052 6.9914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158698525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = 19.205295 kcal Electronic energy + Delta-G solvation = -21946.015444 eV Core-core repulsion = 19028.207574 eV Total energy + Delta-G solvation = -2917.807870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.65363 -38.20617 -35.35726 -32.34997 -31.69831 -30.89541 -29.73590 -27.13234 -26.28596 -26.09524 -25.00479 -22.86166 -22.52222 -21.69502 -19.88742 -17.83213 -16.71263 -16.14363 -15.86747 -15.49271 -15.14325 -14.77046 -14.38983 -13.81665 -13.68126 -13.27277 -13.07782 -12.85757 -12.76848 -12.41991 -12.34562 -11.97599 -11.96062 -11.59436 -11.41134 -11.03535 -10.98589 -10.84713 -10.82660 -10.69004 -10.54659 -10.27787 -10.17451 -9.87465 -9.56401 -8.95312 -8.90751 -8.83432 -8.69393 -8.28459 -7.83907 -5.93372 -3.92958 1.35183 1.41671 3.35375 3.41874 3.44837 3.73879 4.39822 4.53064 4.81940 4.86717 4.98783 5.09599 5.22435 5.28061 5.42443 5.45533 5.49976 5.56555 5.61113 5.63047 5.75003 5.86120 5.98290 6.04827 6.06450 6.09745 6.14845 6.27317 6.39094 6.42939 6.48868 6.50586 6.61441 6.68927 6.78052 6.87159 6.92466 7.00996 7.29153 7.30206 7.34297 7.45649 7.55510 7.75162 7.90823 8.07576 8.52688 9.12565 9.69595 11.18330 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.003878 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.385473 B = 7218.545723 C = 7615.569714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.030 3.970 3 N -0.520 5.520 4 C 0.082 3.918 5 C -0.065 4.065 6 C -0.116 4.116 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.123 4.123 10 C -0.097 4.097 11 C 0.060 3.940 12 C -0.050 4.050 13 C -0.133 4.133 14 C -0.114 4.114 15 C 0.033 3.967 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.013 0.987 45 H 0.011 0.989 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 -5.879 -19.374 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.097 4.097 3 N -0.243 5.243 4 C -0.045 4.045 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.143 4.143 8 C -0.146 4.146 9 C -0.141 4.141 10 C -0.115 4.115 11 C -0.066 4.066 12 C -0.051 4.051 13 C -0.189 4.189 14 C -0.171 4.171 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.030 0.970 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.184 -5.772 -19.265 20.229 hybrid contribution -0.261 -0.095 0.856 0.900 sum -2.445 -5.866 -18.409 19.475 Atomic orbital electron populations 1.22456 0.99070 1.01958 1.01704 1.22609 0.92345 0.91082 1.03701 1.62215 1.58217 1.01777 1.02053 1.21202 0.96538 0.98168 0.88598 1.19837 0.95076 0.96204 0.95409 1.21065 1.00032 0.97398 0.95009 1.21064 0.96046 1.00258 0.96931 1.21087 0.95787 0.97850 0.99864 1.21148 0.99821 0.97823 0.95284 1.21076 0.94687 0.99854 0.95889 1.22436 0.97936 0.97661 0.88616 1.20543 0.93802 0.95689 0.95048 1.21989 1.00133 0.96027 1.00786 1.21578 0.96914 0.99451 0.99175 1.19125 0.96732 0.94517 0.90037 1.21245 1.09655 1.25111 0.98270 0.92264 1.25011 0.95779 0.95431 0.98381 1.69971 1.32522 1.29625 1.21736 0.86679 0.82292 0.78684 0.80857 1.20809 1.21437 1.19938 0.92890 0.92512 0.92141 0.91487 0.88497 0.90259 0.93649 0.86584 0.86552 0.86586 0.86339 0.85863 0.91913 0.94353 0.93881 0.91620 0.94550 0.94585 0.92975 0.93584 0.96846 0.97024 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 9.18 37.16 0.34 -1.96 16 2 C 0.03 0.41 5.38 -3.82 -0.02 0.39 16 3 N -0.52 -7.55 3.52 -236.08 -0.83 -8.38 16 4 C 0.08 1.05 4.86 -4.98 -0.02 1.03 16 5 C -0.06 -0.79 4.89 -104.62 -0.51 -1.30 16 6 C -0.12 -1.29 8.66 -39.58 -0.34 -1.63 16 7 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 8 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 9 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 10 C -0.10 -1.16 9.73 -39.58 -0.38 -1.55 16 11 C 0.06 1.03 4.06 -3.83 -0.02 1.02 16 12 C -0.05 -1.00 0.61 -154.51 -0.09 -1.09 16 13 C -0.13 -2.50 6.86 37.16 0.25 -2.25 16 14 C -0.11 -2.22 7.96 37.16 0.30 -1.93 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 16 C -0.50 -13.82 7.45 -34.44 -0.26 -14.08 16 17 H 0.06 1.59 5.78 -52.49 -0.30 1.28 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.05 0.58 5.42 -51.93 -0.28 0.30 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.79 6.22 -51.92 -0.32 0.47 16 27 H 0.07 0.88 6.89 -51.93 -0.36 0.52 16 28 H 0.10 1.40 3.96 -51.93 -0.21 1.20 16 29 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 30 H 0.05 0.55 5.62 -51.93 -0.29 0.26 16 31 H 0.12 1.16 7.12 -52.49 -0.37 0.79 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.06 1.09 7.47 -51.93 -0.39 0.70 16 37 H 0.04 0.66 5.84 -51.93 -0.30 0.36 16 38 H 0.04 0.73 6.32 -51.93 -0.33 0.40 16 39 H 0.06 1.38 6.29 -51.93 -0.33 1.05 16 40 H 0.04 0.65 7.55 -51.93 -0.39 0.26 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 43 H 0.05 0.83 7.47 -51.93 -0.39 0.44 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -29.23 346.23 -9.58 -38.81 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.52 Total: 0.12 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.16 Total: -26.25 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.10 Total: -34.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.23 -9.58 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158698525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.019 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds