Wall clock time and date at job start Mon Mar 30 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99573 * 179.74512 * 6 5 4 8 8 C 1.38234 * 120.00278 * 0.55651 * 7 6 5 9 9 C 1.50696 * 120.00407 * 179.72553 * 8 7 6 10 10 N 1.46900 * 109.47295 * 269.97592 * 9 8 7 11 11 C 1.46901 * 110.99753 * 293.95589 * 10 9 8 12 12 C 1.46898 * 111.00342 * 169.99644 * 10 9 8 13 13 H 1.08997 * 109.47221 * 309.99780 * 12 10 9 14 14 C 1.53001 * 109.46850 * 70.00056 * 12 10 9 15 15 C 1.50703 * 109.47074 * 189.99963 * 12 10 9 16 16 H 1.08000 * 119.99625 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99851 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00032 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99954 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47271 * 59.99019 * 19 17 15 21 21 H 1.48495 * 109.47196 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46610 * 299.99539 * 19 17 15 23 23 C 1.38235 * 119.99635 * 359.69713 * 8 7 6 24 24 C 1.38231 * 120.00542 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99949 * 180.27501 * 7 6 5 36 36 H 1.09011 * 109.47103 * 29.97012 * 9 8 7 37 37 H 1.08994 * 109.47748 * 149.97283 * 9 8 7 38 38 H 1.08993 * 109.47532 * 59.99549 * 11 10 9 39 39 H 1.08996 * 109.47247 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.46640 * 299.99400 * 11 10 9 41 41 H 1.08996 * 109.47240 * 299.99947 * 14 12 10 42 42 H 1.08997 * 109.47434 * 59.99854 * 14 12 10 43 43 H 1.09003 * 109.46726 * 179.97438 * 14 12 10 44 44 H 0.97005 * 119.99904 * 180.02562 * 18 17 15 45 45 H 1.08006 * 119.99581 * 180.02562 * 23 8 7 46 46 H 1.08000 * 120.00464 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0717 -1.6722 8 6 6.2973 -1.0283 -1.0788 9 6 7.7991 -1.1367 -1.0187 10 7 8.2885 -1.8294 -2.2182 11 6 7.8377 -3.2274 -2.2394 12 6 9.7520 -1.7466 -2.3138 13 1 10.0663 -0.7105 -2.1882 14 6 10.3841 -2.6077 -1.2184 15 6 10.1962 -2.2461 -3.6645 16 1 9.4645 -2.5910 -4.3800 17 6 11.5368 -2.2638 -3.9862 18 7 12.4278 -1.8443 -3.1145 19 14 12.0875 -2.8822 -5.6606 20 1 11.4743 -2.0458 -6.7235 21 1 13.5669 -2.7986 -5.7572 22 1 11.6587 -4.2936 -5.8324 23 6 5.5100 -2.0287 -0.5400 24 6 4.1324 -1.9293 -0.5949 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.8680 1.0254 -2.2006 35 1 6.3219 0.8535 -2.0928 36 1 8.2340 -0.1382 -0.9731 37 1 8.0877 -1.6995 -0.1311 38 1 6.7482 -3.2579 -2.2382 39 1 8.2142 -3.7170 -3.1375 40 1 8.2167 -3.7447 -1.3580 41 1 10.0628 -2.2465 -0.2415 42 1 10.0698 -3.6438 -1.3439 43 1 11.4701 -2.5466 -1.2896 44 1 13.3710 -1.8564 -3.3410 45 1 5.9713 -2.8880 -0.0760 46 1 3.5173 -2.7111 -0.1743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161748545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:03 Heat of formation + Delta-G solvation = 6.341053 kcal Electronic energy + Delta-G solvation = -21243.350737 eV Core-core repulsion = 18324.985032 eV Total energy + Delta-G solvation = -2918.365705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.55272 -37.35008 -36.00944 -32.98399 -31.51131 -30.70665 -28.73378 -27.50276 -27.29430 -25.46100 -25.19662 -23.09998 -22.34018 -20.77672 -19.98310 -19.15082 -16.30385 -15.95631 -15.48160 -15.21718 -14.87299 -14.61824 -14.42522 -14.20799 -13.58554 -13.36881 -13.22218 -13.07046 -12.54341 -12.41002 -12.31323 -12.04447 -11.93471 -11.59749 -11.35272 -11.14367 -11.02182 -10.88625 -10.87034 -10.78337 -10.66550 -10.62698 -10.47669 -10.39388 -10.01459 -9.76706 -8.89970 -8.61475 -8.36252 -8.23805 -7.10617 -5.98763 -4.02240 1.60245 1.68334 3.34267 3.38211 3.41612 3.97528 4.44399 4.66734 4.70549 4.81077 5.06308 5.17901 5.20264 5.26737 5.32644 5.36318 5.41421 5.46512 5.50921 5.64939 5.72129 5.74867 5.78124 5.87943 5.91803 6.01082 6.14371 6.14409 6.18220 6.29595 6.33943 6.38722 6.44067 6.68811 6.69543 6.81844 6.84328 6.91516 7.02535 7.14375 7.28862 7.48491 7.73183 7.86484 8.15701 8.40747 8.61910 9.03676 9.62573 11.08292 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.038146 B = 0.003211 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.838204 B = 8717.141004 C = 8826.484223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.092 4.092 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.062 4.062 9 C 0.088 3.912 10 N -0.528 5.528 11 C 0.033 3.967 12 C 0.211 3.789 13 H 0.038 0.962 14 C -0.172 4.172 15 C -0.497 4.497 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.113 4.113 24 C -0.121 4.121 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.015 0.985 41 H 0.006 0.994 42 H 0.031 0.969 43 H 0.088 0.912 44 H 0.260 0.740 45 H 0.115 0.885 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.592 3.013 6.935 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.110 4.110 5 C -0.092 4.092 6 C -0.136 4.136 7 C -0.118 4.118 8 C -0.062 4.062 9 C -0.040 4.040 10 N -0.251 5.251 11 C -0.115 4.115 12 C 0.105 3.895 13 H 0.056 0.944 14 C -0.231 4.231 15 C -0.536 4.536 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.131 4.131 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.567 3.281 6.529 20.887 hybrid contribution 0.826 -0.819 -0.162 1.174 sum -18.742 2.462 6.366 19.946 Atomic orbital electron populations 1.21857 0.95369 1.01577 1.01657 1.21081 0.95121 0.96625 0.98136 1.21917 1.01984 0.95613 1.01250 1.20630 0.91538 1.00814 0.98064 1.19711 0.95051 0.95024 0.99437 1.20955 0.93587 0.98523 1.00520 1.21038 0.94321 0.98157 0.98247 1.19979 0.95990 0.93904 0.96364 1.21043 0.89837 0.99874 0.93262 1.62372 1.14797 1.13359 1.34581 1.22276 0.98328 0.90135 1.00803 1.19330 0.79694 0.96035 0.94480 0.94406 1.22409 1.05504 0.99112 0.96119 1.21073 0.91655 1.41796 0.99068 0.92028 1.24926 0.96662 0.95607 0.97135 1.69877 1.01407 1.47743 1.34523 0.86581 0.77231 0.79299 0.84401 1.20236 1.21423 1.20396 1.21032 0.93440 0.98429 1.00229 1.20887 0.94581 0.97781 1.00702 0.92726 0.92796 0.92805 0.91212 0.92866 0.93125 0.91848 0.91377 0.91287 0.86656 0.86064 0.90804 0.94922 0.93565 0.91026 0.96666 0.97506 0.95001 0.89344 0.92986 0.86656 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.09 -0.78 2.91 -90.62 -0.26 -1.05 16 3 C -0.15 -1.31 8.78 37.16 0.33 -0.98 16 4 C -0.07 -0.70 4.84 -27.89 -0.13 -0.83 16 5 C -0.09 -1.12 4.70 -104.62 -0.49 -1.61 16 6 C -0.12 -1.53 7.98 -39.58 -0.32 -1.85 16 7 C -0.10 -1.50 9.70 -39.58 -0.38 -1.88 16 8 C -0.06 -1.00 4.88 -104.63 -0.51 -1.52 16 9 C 0.09 1.63 4.69 -4.98 -0.02 1.61 16 10 N -0.53 -11.51 4.69 -237.73 -1.12 -12.62 16 11 C 0.03 0.67 8.27 60.07 0.50 1.17 16 12 C 0.21 5.32 2.31 -68.86 -0.16 5.16 16 13 H 0.04 1.05 7.93 -51.93 -0.41 0.63 16 14 C -0.17 -4.19 8.22 37.16 0.31 -3.88 16 15 C -0.50 -13.72 7.91 -34.44 -0.27 -13.99 16 16 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 18 N -0.90 -25.61 11.32 55.43 0.63 -24.98 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -1.65 7.97 -39.59 -0.32 -1.97 16 24 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.63 6.28 -51.93 -0.33 0.31 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.12 1.28 8.05 -52.49 -0.42 0.86 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.07 1.37 7.88 -51.92 -0.41 0.96 16 37 H 0.03 0.61 7.00 -51.93 -0.36 0.24 16 38 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 39 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 40 H 0.01 0.30 6.46 -51.93 -0.34 -0.04 16 41 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 42 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 43 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.12 1.62 8.03 -52.48 -0.42 1.20 16 46 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -28.39 354.75 -10.14 -38.53 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.10 Total: 0.01 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -1.88 Total: -22.78 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.49 Total: -37.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.39 -10.14 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161748545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.874 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds