Wall clock time and date at job start Mon Mar 30 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99573 * 179.74512 * 6 5 4 8 8 C 1.38234 * 120.00278 * 0.55651 * 7 6 5 9 9 C 1.50696 * 120.00407 * 179.72553 * 8 7 6 10 10 N 1.46900 * 109.47295 * 269.97592 * 9 8 7 11 11 C 1.46901 * 110.99753 * 293.95589 * 10 9 8 12 12 C 1.46898 * 111.00342 * 169.99644 * 10 9 8 13 13 H 1.08997 * 109.47221 * 309.99780 * 12 10 9 14 14 C 1.53001 * 109.46850 * 70.00056 * 12 10 9 15 15 C 1.50703 * 109.47074 * 189.99963 * 12 10 9 16 16 H 1.08000 * 119.99625 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99851 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00032 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99954 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47271 * 59.99019 * 19 17 15 21 21 H 1.48495 * 109.47196 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46610 * 299.99539 * 19 17 15 23 23 C 1.38235 * 119.99635 * 359.69713 * 8 7 6 24 24 C 1.38231 * 120.00542 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99949 * 180.27501 * 7 6 5 36 36 H 1.09011 * 109.47103 * 29.97012 * 9 8 7 37 37 H 1.08994 * 109.47748 * 149.97283 * 9 8 7 38 38 H 1.08993 * 109.47532 * 59.99549 * 11 10 9 39 39 H 1.08996 * 109.47247 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.46640 * 299.99400 * 11 10 9 41 41 H 1.08996 * 109.47240 * 299.99947 * 14 12 10 42 42 H 1.08997 * 109.47434 * 59.99854 * 14 12 10 43 43 H 1.09003 * 109.46726 * 179.97438 * 14 12 10 44 44 H 0.97005 * 119.99904 * 180.02562 * 18 17 15 45 45 H 1.08006 * 119.99581 * 180.02562 * 23 8 7 46 46 H 1.08000 * 120.00464 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0717 -1.6722 8 6 6.2973 -1.0283 -1.0788 9 6 7.7991 -1.1367 -1.0187 10 7 8.2885 -1.8294 -2.2182 11 6 7.8377 -3.2274 -2.2394 12 6 9.7520 -1.7466 -2.3138 13 1 10.0663 -0.7105 -2.1882 14 6 10.3841 -2.6077 -1.2184 15 6 10.1962 -2.2461 -3.6645 16 1 9.4645 -2.5910 -4.3800 17 6 11.5368 -2.2638 -3.9862 18 7 12.4278 -1.8443 -3.1145 19 14 12.0875 -2.8822 -5.6606 20 1 11.4743 -2.0458 -6.7235 21 1 13.5669 -2.7986 -5.7572 22 1 11.6587 -4.2936 -5.8324 23 6 5.5100 -2.0287 -0.5400 24 6 4.1324 -1.9293 -0.5949 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.8680 1.0254 -2.2006 35 1 6.3219 0.8535 -2.0928 36 1 8.2340 -0.1382 -0.9731 37 1 8.0877 -1.6995 -0.1311 38 1 6.7482 -3.2579 -2.2382 39 1 8.2142 -3.7170 -3.1375 40 1 8.2167 -3.7447 -1.3580 41 1 10.0628 -2.2465 -0.2415 42 1 10.0698 -3.6438 -1.3439 43 1 11.4701 -2.5466 -1.2896 44 1 13.3710 -1.8564 -3.3410 45 1 5.9713 -2.8880 -0.0760 46 1 3.5173 -2.7111 -0.1743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161748545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:03 Heat of formation + Delta-G solvation = -7.223661 kcal Electronic energy + Delta-G solvation = -21243.938947 eV Core-core repulsion = 18324.985032 eV Total energy + Delta-G solvation = -2918.953916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66752 -38.86255 -37.00198 -34.84379 -32.83621 -31.79262 -30.43225 -28.84342 -27.93597 -27.29275 -26.75903 -24.56418 -23.45051 -21.95602 -20.94449 -20.73684 -18.26311 -17.21441 -16.87685 -16.55037 -16.19781 -16.03141 -15.51659 -15.10662 -14.99743 -14.91334 -14.38444 -14.24133 -14.15086 -13.55115 -13.38537 -13.17400 -12.98195 -12.89302 -12.75965 -12.66895 -12.56290 -12.52129 -12.27813 -12.26651 -12.05662 -11.76619 -11.70917 -11.63652 -11.44788 -11.36325 -10.94064 -10.49190 -9.69965 -9.36750 -8.83277 -8.10548 -6.21671 0.49819 0.59961 1.42557 1.44233 1.51919 2.42919 2.86425 3.18074 3.59250 3.86202 3.93335 4.05884 4.10507 4.16211 4.23650 4.39064 4.44474 4.55782 4.63876 4.67912 4.68806 4.78988 4.82895 4.85386 4.87371 4.88421 4.93140 5.01414 5.11386 5.12125 5.13344 5.16879 5.21609 5.28421 5.38653 5.48367 5.50149 5.52899 5.60954 5.69602 5.78725 5.81316 5.85834 6.19904 6.21847 6.48669 6.72173 6.91198 7.47423 8.95225 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.038146 B = 0.003211 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.838204 B = 8717.141004 C = 8826.484223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.071 4.071 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.084 4.084 9 C 0.094 3.906 10 N -0.539 5.539 11 C 0.042 3.958 12 C 0.215 3.785 13 H 0.005 0.995 14 C -0.158 4.158 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.959 3.041 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.261 0.739 45 H 0.119 0.881 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.052 2.472 6.767 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.108 4.108 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.133 4.133 8 C -0.084 4.084 9 C -0.033 4.033 10 N -0.262 5.262 11 C -0.106 4.106 12 C 0.108 3.892 13 H 0.023 0.977 14 C -0.217 4.217 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.138 4.138 24 C -0.139 4.139 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.047 2.740 6.369 23.111 hybrid contribution 1.492 -0.595 -0.061 1.607 sum -20.555 2.145 6.308 21.608 Atomic orbital electron populations 1.21826 0.94017 1.02167 1.02149 1.21051 0.96189 0.96141 0.97309 1.21919 1.00926 0.96054 1.01923 1.20689 0.89409 1.01856 0.98878 1.20063 0.96628 0.94091 0.97675 1.21160 0.92689 0.99399 1.00256 1.21104 0.95477 0.97918 0.98756 1.19789 0.94369 0.95475 0.98792 1.20972 0.91815 0.98763 0.91794 1.62252 1.12538 1.14605 1.36792 1.22192 0.99474 0.88981 0.99955 1.19083 0.82080 0.94021 0.93994 0.97689 1.22202 1.03567 0.99121 0.96811 1.21326 0.91905 1.42032 1.00015 0.92754 1.25691 0.96718 0.95725 1.00595 1.70005 1.01591 1.48391 1.36148 0.85594 0.76863 0.78938 0.80118 1.19885 1.20905 1.19652 1.21118 0.94307 0.98111 1.00257 1.21179 0.93994 0.98569 1.00195 0.92266 0.92182 0.92342 0.91805 0.92201 0.92553 0.93429 0.90199 0.90507 0.84826 0.86772 0.91851 0.94940 0.91431 0.92903 0.96300 0.95783 0.94757 0.91931 0.92943 0.86284 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.09 -1.27 2.91 -10.79 -0.03 -1.31 16 3 C -0.15 -2.30 8.78 71.98 0.63 -1.67 16 4 C -0.07 -1.13 4.84 29.85 0.14 -0.99 16 5 C -0.08 -1.85 4.70 -19.87 -0.09 -1.94 16 6 C -0.12 -2.86 7.98 22.27 0.18 -2.68 16 7 C -0.11 -3.42 9.70 22.27 0.22 -3.20 16 8 C -0.08 -2.70 4.88 -19.87 -0.10 -2.80 16 9 C 0.09 3.57 4.69 85.56 0.40 3.97 16 10 N -0.54 -23.87 4.69 -906.05 -4.25 -28.12 16 11 C 0.04 1.69 8.27 127.69 1.06 2.75 16 12 C 0.22 11.19 2.31 44.17 0.10 11.30 16 13 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 14 C -0.16 -7.81 8.22 71.98 0.59 -7.22 16 15 C -0.51 -28.92 7.91 25.60 0.20 -28.71 16 16 H 0.05 3.07 7.12 -2.91 -0.02 3.05 16 17 C 0.01 0.62 5.30 84.66 0.45 1.07 16 18 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 19 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C -0.12 -3.34 7.97 22.27 0.18 -3.16 16 24 C -0.12 -2.83 9.70 22.27 0.22 -2.61 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.87 6.28 -2.39 -0.01 0.86 16 32 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.13 2.71 8.05 -2.91 -0.02 2.69 16 35 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.06 2.47 7.88 -2.38 -0.02 2.45 16 37 H 0.03 1.21 7.00 -2.39 -0.02 1.20 16 38 H 0.07 2.40 6.17 -2.39 -0.01 2.38 16 39 H 0.05 2.30 6.76 -2.39 -0.02 2.28 16 40 H 0.02 0.73 6.46 -2.38 -0.02 0.71 16 41 H 0.02 1.06 6.91 -2.39 -0.02 1.04 16 42 H 0.03 1.63 6.42 -2.39 -0.02 1.61 16 43 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 44 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 45 H 0.12 3.17 8.03 -2.91 -0.02 3.15 16 46 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -60.96 354.75 3.74 -57.22 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.92 Total: 16.09 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.81 Total: -38.17 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -4.01 Total: -81.51 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.96 3.74 -57.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161748545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.996 kcal (2) G-P(sol) polarization free energy of solvation -60.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds