Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47424 * 2 1 4 4 C 1.53001 * 109.47140 * 120.00032 * 2 1 3 5 5 C 1.50700 * 109.47202 * 64.99644 * 4 2 1 6 6 C 1.38240 * 119.99904 * 90.00182 * 5 4 2 7 7 C 1.38236 * 119.99973 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00033 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47089 * 89.99843 * 9 8 7 11 11 C 1.46904 * 110.99841 * 66.04861 * 10 9 8 12 12 C 1.46899 * 111.00230 * 190.00004 * 10 9 8 13 13 H 1.09002 * 109.47043 * 55.00375 * 12 10 9 14 14 C 1.52997 * 109.47254 * 295.00304 * 12 10 9 15 15 C 1.50699 * 109.47244 * 175.00202 * 12 10 9 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 C 1.38238 * 120.00145 * 0.25994 * 8 7 6 24 24 C 1.38233 * 120.00131 * 270.02391 * 5 4 2 25 25 H 1.09002 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46805 * 299.99676 * 1 2 3 27 27 H 1.08995 * 109.46914 * 60.00005 * 1 2 3 28 28 H 1.09000 * 109.46657 * 239.99466 * 2 1 3 29 29 H 1.09003 * 109.47135 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46605 * 300.00284 * 3 2 1 31 31 H 1.08998 * 109.47163 * 59.99859 * 3 2 1 32 32 H 1.09002 * 109.47145 * 304.99637 * 4 2 1 33 33 H 1.08997 * 109.47306 * 184.99429 * 4 2 1 34 34 H 1.07997 * 120.00470 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.99858 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47076 * 329.99984 * 9 8 7 37 37 H 1.09000 * 109.47366 * 210.00611 * 9 8 7 38 38 H 1.08992 * 109.47139 * 183.95276 * 11 10 9 39 39 H 1.08998 * 109.46871 * 303.95426 * 11 10 9 40 40 H 1.09004 * 109.46908 * 63.95125 * 11 10 9 41 41 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 42 42 H 1.09002 * 109.47153 * 300.00004 * 14 12 10 43 43 H 1.08998 * 109.47533 * 59.99633 * 14 12 10 44 44 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 45 45 H 1.07999 * 120.00154 * 179.72712 * 23 8 7 46 46 H 1.07998 * 120.00096 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 6 2.4814 -3.0967 0.5951 7 6 2.1159 -4.4287 0.5402 8 6 0.9100 -4.8373 1.0788 9 6 0.5113 -6.2893 1.0185 10 7 1.0010 -6.9818 2.2179 11 6 0.3273 -6.4843 3.4248 12 6 0.8417 -8.4363 2.0879 13 1 1.3341 -8.7757 1.1766 14 6 -0.6471 -8.7826 2.0226 15 6 1.4643 -9.1182 3.2789 16 1 1.9311 -8.5298 4.0550 17 6 1.4369 -10.4931 3.3783 18 7 0.8680 -11.2096 2.4335 19 14 2.2080 -11.3383 4.8550 20 1 1.5372 -10.8756 6.0963 21 1 2.0471 -12.8087 4.7235 22 1 3.6532 -11.0026 4.9187 23 6 0.0673 -3.9130 1.6674 24 6 0.4353 -2.5818 1.7270 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6445 1.2951 34 1 3.4232 -2.7775 0.1740 35 1 2.7720 -5.1500 0.0759 36 1 0.9459 -6.7489 0.1307 37 1 -0.5750 -6.3663 0.9724 38 1 0.7576 -6.9629 4.3044 39 1 0.4609 -5.4049 3.4966 40 1 -0.7363 -6.7158 3.3688 41 1 -0.7653 -9.8618 1.9257 42 1 -1.1394 -8.4432 2.9340 43 1 -1.0975 -8.2894 1.1612 44 1 0.8491 -12.1769 2.5032 45 1 -0.8768 -4.2315 2.0842 46 1 -0.2210 -1.8605 2.1910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161748717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = -6.686387 kcal Electronic energy + Delta-G solvation = -21253.865567 eV Core-core repulsion = 18334.934949 eV Total energy + Delta-G solvation = -2918.930618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67302 -38.86943 -37.00219 -34.83828 -32.82181 -31.79397 -30.44376 -28.86733 -27.94860 -27.27655 -26.73394 -24.55555 -23.47400 -21.96653 -20.92518 -20.73990 -18.25458 -17.23356 -16.89524 -16.52852 -16.13301 -16.08737 -15.49906 -15.13763 -15.05480 -14.88924 -14.35855 -14.22091 -14.16784 -13.59710 -13.31869 -13.16751 -12.98748 -12.93607 -12.76460 -12.64662 -12.60132 -12.49453 -12.28422 -12.24385 -12.03781 -11.75203 -11.74254 -11.63131 -11.44666 -11.34755 -10.92333 -10.49735 -9.69901 -9.36554 -8.82830 -8.10913 -6.22054 0.49768 0.59850 1.42429 1.44105 1.51723 2.42719 2.86389 3.17961 3.59659 3.85992 3.93892 4.04399 4.13518 4.14981 4.23540 4.37419 4.46167 4.55932 4.64181 4.67350 4.70333 4.78948 4.82856 4.86128 4.86565 4.89261 4.93198 5.01579 5.11555 5.12520 5.12751 5.17662 5.21541 5.28267 5.38774 5.48556 5.51683 5.53328 5.60988 5.70051 5.78850 5.81267 5.85694 6.18268 6.21437 6.47888 6.72881 6.91189 7.47087 8.95044 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.040201 B = 0.003212 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.332724 B = 8716.294160 C = 8906.680838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.084 4.084 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.084 4.084 9 C 0.094 3.906 10 N -0.539 5.539 11 C 0.041 3.959 12 C 0.215 3.785 13 H 0.005 0.995 14 C -0.158 4.158 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.120 4.120 24 C -0.116 4.116 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.017 0.983 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.025 0.975 44 H 0.261 0.739 45 H 0.119 0.881 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 22.998 -3.860 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.108 4.108 5 C -0.085 4.085 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.084 4.084 9 C -0.034 4.034 10 N -0.262 5.262 11 C -0.107 4.107 12 C 0.108 3.892 13 H 0.023 0.977 14 C -0.217 4.217 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.785 3.215 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.199 1.199 23 C -0.139 4.139 24 C -0.134 4.134 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.152 22.901 -3.863 23.225 hybrid contribution -0.608 -1.452 0.439 1.634 sum -0.456 21.448 -3.424 21.725 Atomic orbital electron populations 1.21917 0.95276 1.01601 1.01965 1.21054 0.96050 0.96375 0.97271 1.21826 1.01183 0.94971 1.02182 1.20689 1.01548 0.89654 0.98936 1.20062 0.94333 0.96405 0.97655 1.21187 1.00299 0.92318 1.00242 1.21098 0.95739 0.96478 0.99862 1.19797 0.95504 0.94237 0.98893 1.20967 0.97185 0.91255 0.93958 1.62263 1.56591 1.05456 1.01870 1.22206 0.95700 0.99379 0.93427 1.19077 0.91600 0.82790 0.95733 0.97661 1.22198 0.99304 1.02819 0.97420 1.21347 1.36101 0.91536 1.06445 0.92619 1.25695 0.95971 0.98023 0.99035 1.70005 1.45261 1.06093 1.34746 0.85594 0.79021 0.77118 0.79782 1.19636 1.20918 1.19871 1.21129 0.99664 0.93570 0.99533 1.21156 0.96838 0.95135 1.00283 0.93350 0.92070 0.92588 0.91966 0.92296 0.92345 0.92164 0.90288 0.90424 0.84710 0.86733 0.91843 0.94870 0.92848 0.91314 0.96432 0.91932 0.94888 0.95644 0.92942 0.86282 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.76 71.98 0.63 -1.59 16 2 C -0.09 -1.28 2.91 -10.79 -0.03 -1.32 16 3 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 4 C -0.07 -1.13 4.84 29.85 0.14 -0.99 16 5 C -0.08 -1.84 4.71 -19.87 -0.09 -1.94 16 6 C -0.12 -3.01 9.70 22.27 0.22 -2.79 16 7 C -0.11 -3.39 9.70 22.27 0.22 -3.18 16 8 C -0.08 -2.70 4.88 -19.86 -0.10 -2.80 16 9 C 0.09 3.55 4.56 85.56 0.39 3.94 16 10 N -0.54 -23.88 4.73 -906.06 -4.29 -28.17 16 11 C 0.04 1.66 8.56 127.69 1.09 2.75 16 12 C 0.22 11.19 2.34 44.17 0.10 11.29 16 13 H 0.01 0.32 8.03 -2.39 -0.02 0.30 16 14 C -0.16 -7.83 8.28 71.98 0.60 -7.24 16 15 C -0.52 -28.95 7.94 25.60 0.20 -28.74 16 16 H 0.06 3.13 6.75 -2.91 -0.02 3.11 16 17 C 0.01 0.63 5.30 84.65 0.45 1.07 16 18 N -0.92 -53.62 11.32 21.45 0.24 -53.37 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 C -0.12 -3.35 7.92 22.27 0.18 -3.18 16 24 C -0.12 -2.68 7.96 22.27 0.18 -2.50 16 25 H 0.05 0.85 6.26 -2.39 -0.01 0.84 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.06 2.46 7.94 -2.39 -0.02 2.44 16 37 H 0.03 1.24 6.88 -2.39 -0.02 1.22 16 38 H 0.05 2.32 6.53 -2.39 -0.02 2.31 16 39 H 0.07 2.43 5.91 -2.39 -0.01 2.42 16 40 H 0.02 0.69 6.28 -2.38 -0.01 0.67 16 41 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 42 H 0.03 1.57 6.39 -2.39 -0.02 1.56 16 43 H 0.02 1.12 6.75 -2.39 -0.02 1.10 16 44 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.12 3.17 8.00 -2.91 -0.02 3.14 16 46 H 0.14 2.51 8.04 -2.91 -0.02 2.49 16 Total: -1.00 -60.94 353.75 3.74 -57.20 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.92 Total: 16.18 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 4.83 Total: -38.16 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -4.05 Total: -81.54 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -60.94 3.74 -57.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161748717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.511 kcal (2) G-P(sol) polarization free energy of solvation -60.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds