Wall clock time and date at job start Mon Mar 30 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48505 * 109.46882 * 90.00229 * 3 2 1 5 5 H 1.48494 * 109.47252 * 210.00148 * 3 2 1 6 6 H 1.48495 * 109.47175 * 330.00727 * 3 2 1 7 7 C 1.40010 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99786 * 17.82262 * 7 2 1 9 9 C 1.40943 * 120.00008 * 197.81391 * 7 2 1 10 10 C 1.40945 * 120.13666 * 28.83229 * 9 7 2 11 11 C 1.36197 * 119.89951 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.18894 * 359.97438 * 11 10 9 13 13 C 1.47999 * 119.86218 * 180.02562 * 12 11 10 14 14 C 1.39616 * 120.13860 * 359.72192 * 13 12 11 15 15 C 1.37925 * 119.88085 * 179.79090 * 14 13 12 16 16 C 1.38383 * 120.15945 * 0.46748 * 15 14 13 17 17 C 1.38484 * 120.27432 * 359.78512 * 16 15 14 18 18 Cl 1.73601 * 119.93762 * 179.97438 * 17 16 15 19 19 C 1.38074 * 120.11924 * 359.97438 * 17 16 15 20 20 C 1.39777 * 120.27363 * 0.02562 * 12 11 10 21 21 C 1.36573 * 120.10150 * 359.73598 * 20 12 11 22 22 F 1.35099 * 120.09619 * 180.25373 * 21 20 12 23 23 H 0.97000 * 120.00088 * 175.44245 * 1 2 3 24 24 H 1.08001 * 120.04960 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.90051 * 179.97438 * 11 10 9 26 26 H 1.08004 * 120.05728 * 0.02586 * 14 13 12 27 27 H 1.08002 * 119.91994 * 180.20872 * 15 14 13 28 28 H 1.08002 * 119.86289 * 179.76586 * 16 15 14 29 29 H 1.07996 * 120.08111 * 179.97438 * 19 17 16 30 30 H 1.08008 * 119.95129 * 180.02562 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 1.4001 5 1 3.5397 1.4401 -0.7000 6 1 1.4397 2.6527 -0.6999 7 6 2.0082 -1.2125 -0.0005 8 1 1.5070 -2.1253 -0.2872 9 6 3.3670 -1.2420 0.3729 10 6 3.8713 -0.2920 1.2838 11 6 5.1850 -0.3252 1.6416 12 6 6.0357 -1.3007 1.1077 13 6 7.4619 -1.3305 1.5020 14 6 7.9608 -0.3850 2.4000 15 6 9.2898 -0.4204 2.7672 16 6 10.1312 -1.3844 2.2403 17 6 9.6445 -2.3221 1.3450 18 17 10.7080 -3.5272 0.6889 19 6 8.3149 -2.3004 0.9734 20 6 5.5436 -2.2465 0.2038 21 6 4.2272 -2.2268 -0.1593 22 9 3.7505 -3.1442 -1.0291 23 1 -0.4850 -0.8374 -0.0667 24 1 3.2170 0.4612 1.6973 25 1 5.5715 0.4030 2.3393 26 1 7.3063 0.3704 2.8093 27 1 9.6756 0.3087 3.4644 28 1 11.1720 -1.4053 2.5282 29 1 7.9360 -3.0317 0.2749 30 1 6.2044 -2.9970 -0.2046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165574605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:48 Heat of formation + Delta-G solvation = -25.340041 kcal Electronic energy + Delta-G solvation = -17725.914002 eV Core-core repulsion = 14618.205415 eV Total energy + Delta-G solvation = -3107.708587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.56674 -39.26982 -37.58301 -36.28083 -34.25309 -31.98484 -30.80284 -29.61789 -29.07422 -25.16060 -23.03804 -22.27816 -21.17504 -20.19775 -18.52920 -17.40918 -16.07382 -15.59596 -15.24533 -14.67152 -14.48660 -14.41815 -14.18939 -13.73923 -13.36157 -13.22891 -13.05187 -12.67250 -12.11899 -11.81042 -11.46430 -11.39775 -11.17751 -11.02583 -10.90683 -10.56019 -10.39883 -10.08027 -9.72764 -9.42302 -8.91021 -8.59891 -7.94593 -7.80213 -7.39064 -4.81361 1.15895 1.44400 2.25500 2.36380 2.44574 3.00969 3.17701 3.37049 3.76560 3.86393 4.37386 4.97480 5.03214 5.04235 5.25417 5.43771 5.57526 5.63745 5.66040 5.81934 5.99963 6.20712 6.29320 6.41068 6.52346 6.55789 6.74780 6.91432 7.03715 7.16974 7.21099 7.39201 7.48087 7.57480 8.01441 8.15512 8.35155 9.63266 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.004707 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.969014 B = 5947.451718 C = 6730.991506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.040 3.960 3 Si 1.074 2.926 4 H -0.271 1.271 5 H -0.258 1.258 6 H -0.284 1.284 7 C -0.477 4.477 8 H 0.086 0.914 9 C 0.077 3.923 10 C -0.236 4.236 11 C -0.048 4.048 12 C -0.193 4.193 13 C 0.034 3.966 14 C -0.139 4.139 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.019 4.019 18 Cl -0.087 7.087 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.019 4.019 22 F -0.158 7.158 23 H 0.292 0.708 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.003 0.632 3.572 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.183 4.183 3 Si 0.899 3.101 4 H -0.197 1.197 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.072 3.928 10 C -0.255 4.255 11 C -0.066 4.066 12 C -0.194 4.194 13 C 0.033 3.967 14 C -0.157 4.157 15 C -0.115 4.115 16 C -0.169 4.169 17 C -0.046 4.046 18 Cl -0.058 7.058 19 C -0.155 4.155 20 C -0.101 4.101 21 C -0.039 4.039 22 F -0.137 7.137 23 H 0.104 0.896 24 H 0.135 0.865 25 H 0.125 0.875 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.714 2.068 3.507 13.350 hybrid contribution 0.014 -2.206 -0.251 2.220 sum 12.728 -0.138 3.256 13.139 Atomic orbital electron populations 1.70524 1.08108 1.33700 1.28464 1.27566 0.95621 1.04820 0.90265 0.83573 0.75796 0.72463 0.78295 1.19736 1.18260 1.21143 1.20822 0.94862 0.97403 1.37276 0.89620 1.17850 0.93195 0.90953 0.90761 1.20658 0.95957 1.04656 1.04185 1.20487 0.93112 0.95919 0.97061 1.17671 0.91220 1.02663 1.07894 1.18768 0.92600 0.92326 0.92996 1.21311 0.95441 0.99788 0.99148 1.20923 0.93442 0.97823 0.99327 1.20847 1.00230 0.96346 0.99472 1.20766 0.91246 0.93263 0.99282 1.98341 1.65913 1.56144 1.85439 1.21089 0.91211 1.00735 1.02432 1.20423 0.93658 0.98406 0.97658 1.17353 0.92193 0.95711 0.98604 1.91318 1.89212 1.65132 1.68054 0.89603 0.86549 0.87506 0.85458 0.85709 0.85859 0.85227 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.67 13.65 55.55 0.76 -18.91 16 2 C 0.04 0.98 5.41 -17.32 -0.09 0.88 16 3 Si 1.07 22.30 24.90 -169.99 -4.23 18.07 16 4 H -0.27 -5.19 6.43 56.52 0.36 -4.83 16 5 H -0.26 -5.37 7.03 56.52 0.40 -4.97 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.48 -12.21 9.12 -37.89 -0.35 -12.56 16 8 H 0.09 2.31 7.94 -52.49 -0.42 1.89 16 9 C 0.08 1.87 5.14 -106.73 -0.55 1.32 16 10 C -0.24 -5.19 7.21 -39.29 -0.28 -5.48 16 11 C -0.05 -0.93 9.35 -39.65 -0.37 -1.31 16 12 C -0.19 -3.79 5.90 -104.66 -0.62 -4.41 16 13 C 0.03 0.57 5.88 -104.89 -0.62 -0.05 16 14 C -0.14 -2.03 9.43 -39.18 -0.37 -2.40 16 15 C -0.10 -1.22 10.03 -39.64 -0.40 -1.62 16 16 C -0.15 -1.94 9.82 -39.44 -0.39 -2.33 16 17 C -0.02 -0.28 6.31 -39.55 -0.25 -0.53 16 18 Cl -0.09 -1.14 28.95 -51.86 -1.50 -2.64 16 19 C -0.14 -2.18 9.21 -39.15 -0.36 -2.54 16 20 C -0.08 -1.72 9.33 -39.61 -0.37 -2.09 16 21 C -0.02 -0.44 7.26 -39.07 -0.28 -0.73 16 22 F -0.16 -3.79 16.74 2.25 0.04 -3.76 16 23 H 0.29 7.09 8.73 -40.82 -0.36 6.73 16 24 H 0.12 2.48 4.39 -52.49 -0.23 2.25 16 25 H 0.11 1.75 6.17 -52.48 -0.32 1.43 16 26 H 0.13 1.68 6.18 -52.48 -0.32 1.35 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.13 2.03 6.18 -52.49 -0.32 1.71 16 30 H 0.11 2.05 6.17 -52.48 -0.32 1.73 16 LS Contribution 276.10 15.07 4.16 4.16 Total: -1.00 -25.22 276.10 -8.05 -33.28 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -1.98 Total: 3.63 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -5.29 Total: -33.83 kcal Atomic # 7 Polarization: -19.67 SS G_CDS: 0.76 Total: -18.91 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.23 Total: 18.07 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -25.22 -8.05 -33.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165574605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.936 kcal (2) G-P(sol) polarization free energy of solvation -25.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds