Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 S 1.81002 * 109.47191 * 240.00603 * 2 1 3 5 5 C 1.76199 * 100.00182 * 64.99601 * 4 2 1 6 6 H 1.07999 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.38803 * 119.99949 * 179.97438 * 5 4 2 8 8 N 1.31630 * 119.99849 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46755 * 90.00066 * 9 7 5 11 11 H 1.48495 * 109.46931 * 210.00080 * 9 7 5 12 12 H 1.48500 * 109.46738 * 330.00322 * 9 7 5 13 13 C 1.50701 * 109.47579 * 119.99983 * 2 1 3 14 14 C 1.38271 * 119.97273 * 59.72967 * 13 2 1 15 15 C 1.38210 * 120.02951 * 179.72644 * 14 13 2 16 16 C 1.38346 * 120.00419 * 0.54708 * 15 14 13 17 17 Cl 1.73592 * 120.02156 * 179.74462 * 16 15 14 18 18 C 1.38446 * 119.95795 * 359.72610 * 16 15 14 19 19 Cl 1.73606 * 120.01641 * 180.02562 * 18 16 15 20 20 C 1.38198 * 119.98390 * 240.00507 * 13 2 1 21 21 H 1.09005 * 109.46912 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46942 * 299.99534 * 1 2 3 23 23 H 1.08996 * 109.46959 * 59.99984 * 1 2 3 24 24 H 0.97005 * 119.99878 * 179.97438 * 8 7 5 25 25 H 1.07992 * 119.98629 * 359.97438 * 14 13 2 26 26 H 1.07997 * 119.99677 * 180.29212 * 15 14 13 27 27 H 1.07995 * 120.00120 * 0.02562 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8531 -1.4780 5 6 1.5439 0.2424 -2.7257 6 1 0.9918 1.1286 -2.4494 7 6 1.7900 -0.0329 -4.0637 8 7 2.4633 -1.1127 -4.4004 9 14 1.1644 1.1281 -5.3867 10 1 2.1944 2.1606 -5.6664 11 1 0.8834 0.3605 -6.6264 12 1 -0.0818 1.7862 -4.9186 13 6 2.0324 -0.7104 1.2304 14 6 1.6935 -2.0326 1.4515 15 6 2.1583 -2.6869 2.5767 16 6 2.9537 -2.0157 3.4882 17 17 3.5323 -2.8352 4.9050 18 6 3.2883 -0.6902 3.2695 19 17 4.2870 0.1532 4.4120 20 6 2.8269 -0.0384 2.1399 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.6349 -1.3053 -5.3355 25 1 1.0686 -2.5554 0.7427 26 1 1.8971 -3.7209 2.7465 27 1 3.0872 0.9957 1.9690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172936940.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = -8.757951 kcal Electronic energy + Delta-G solvation = -14143.221363 eV Core-core repulsion = 11464.179062 eV Total energy + Delta-G solvation = -2679.042301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.45937 -36.64263 -36.48640 -33.57286 -32.52351 -30.86638 -29.03566 -25.53628 -23.82212 -22.84965 -20.87476 -17.94141 -16.99891 -16.01416 -15.50378 -14.89470 -14.46894 -14.13993 -13.93266 -13.62912 -13.03384 -12.63654 -12.23219 -11.87196 -11.83566 -11.60846 -11.18043 -11.16302 -11.07368 -10.94822 -10.83702 -10.72898 -10.59171 -9.75571 -9.14122 -8.88165 -8.54524 -8.20453 -6.65808 -6.31111 -4.02896 1.05786 1.20831 1.87491 2.24520 3.12029 3.17110 3.24088 3.32208 3.76482 4.12253 4.68668 4.84510 5.05607 5.23691 5.31546 5.33266 5.44136 5.65280 5.83601 5.91802 6.01336 6.13875 6.25478 6.39287 6.64111 6.71287 6.80065 7.53691 8.28407 9.15686 10.76745 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.004210 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.282048 B = 6649.994864 C = 6887.915976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 H 0.081 0.919 4 S -0.104 6.104 5 C -0.519 4.519 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.869 5.869 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.271 1.271 13 C -0.021 4.021 14 C -0.087 4.087 15 C -0.098 4.098 16 C -0.042 4.042 17 Cl -0.063 7.063 18 C -0.028 4.028 19 Cl -0.061 7.061 20 C -0.096 4.096 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.268 0.732 25 H 0.145 0.855 26 H 0.140 0.860 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -0.753 14.966 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.189 4.189 3 H 0.099 0.901 4 S 0.127 5.873 5 C -0.667 4.667 6 H 0.094 0.906 7 C -0.136 4.136 8 N -0.504 5.504 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.196 1.196 13 C -0.023 4.023 14 C -0.107 4.107 15 C -0.116 4.116 16 C -0.070 4.070 17 Cl -0.035 7.035 18 C -0.056 4.056 19 Cl -0.032 7.032 20 C -0.116 4.116 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.163 0.837 26 H 0.158 0.842 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.098 -1.822 14.895 15.006 hybrid contribution -0.778 1.841 -0.594 2.085 sum -0.681 0.019 14.301 14.317 Atomic orbital electron populations 1.22017 0.93324 1.02394 1.01309 1.22150 0.98652 1.01831 0.96223 0.90097 1.84878 1.73393 1.34670 0.94373 1.22723 1.41191 1.10815 0.91980 0.90601 1.25006 0.94838 0.95794 0.98008 1.70008 1.37605 1.24598 1.18224 0.86174 0.79181 0.80092 0.80153 1.20261 1.20762 1.19620 1.19688 0.94537 0.93925 0.94128 1.21223 0.99178 0.94025 0.96248 1.21003 0.96972 1.00405 0.93270 1.20678 1.02504 0.91792 0.92009 1.98359 1.87774 1.78576 1.38751 1.20653 0.99333 0.91628 0.93967 1.98365 1.67887 1.77411 1.59529 1.20933 0.97917 1.00825 0.91950 0.92055 0.93971 0.91250 0.92196 0.83709 0.84200 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.87 37.16 0.33 -1.89 15 2 C -0.06 -1.12 2.82 -27.88 -0.08 -1.20 15 3 H 0.08 1.51 7.87 -51.92 -0.41 1.10 15 4 S -0.10 -2.53 20.51 -107.50 -2.20 -4.73 15 5 C -0.52 -13.88 8.85 30.94 0.27 -13.60 15 6 H 0.08 1.96 7.14 -52.49 -0.37 1.58 15 7 C 0.07 1.97 5.49 -17.43 -0.10 1.88 15 8 N -0.87 -24.95 13.22 55.49 0.73 -24.22 15 9 Si 0.92 20.72 29.55 -169.99 -5.02 15.70 15 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 13 C -0.02 -0.34 4.78 -104.62 -0.50 -0.84 15 14 C -0.09 -1.29 8.78 -39.58 -0.35 -1.64 15 15 C -0.10 -1.28 9.83 -39.55 -0.39 -1.67 15 16 C -0.04 -0.57 6.32 -39.47 -0.25 -0.82 15 17 Cl -0.06 -0.78 27.96 -51.86 -1.45 -2.23 15 18 C -0.03 -0.40 6.32 -39.47 -0.25 -0.65 15 19 Cl -0.06 -0.79 27.96 -51.86 -1.45 -2.24 15 20 C -0.10 -1.42 9.45 -39.56 -0.37 -1.80 15 21 H 0.06 1.00 7.37 -51.93 -0.38 0.61 15 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.07 1.28 6.93 -51.93 -0.36 0.92 15 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 25 H 0.15 2.11 7.56 -52.49 -0.40 1.71 15 26 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 27 H 0.14 1.90 7.94 -52.49 -0.42 1.49 15 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -28.24 281.39 -9.15 -37.39 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -2.32 Total: -1.69 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.68 Total: -22.22 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.73 Total: -24.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.20 Total: -4.73 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -2.90 Total: -4.46 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.24 -9.15 -37.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172936940.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.633 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds