Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 S 1.81002 * 109.47191 * 240.00603 * 2 1 3 5 5 C 1.76199 * 100.00182 * 64.99601 * 4 2 1 6 6 H 1.07999 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.38803 * 119.99949 * 179.97438 * 5 4 2 8 8 N 1.31630 * 119.99849 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46755 * 90.00066 * 9 7 5 11 11 H 1.48495 * 109.46931 * 210.00080 * 9 7 5 12 12 H 1.48500 * 109.46738 * 330.00322 * 9 7 5 13 13 C 1.50701 * 109.47579 * 119.99983 * 2 1 3 14 14 C 1.38271 * 119.97273 * 59.72967 * 13 2 1 15 15 C 1.38210 * 120.02951 * 179.72644 * 14 13 2 16 16 C 1.38346 * 120.00419 * 0.54708 * 15 14 13 17 17 Cl 1.73592 * 120.02156 * 179.74462 * 16 15 14 18 18 C 1.38446 * 119.95795 * 359.72610 * 16 15 14 19 19 Cl 1.73606 * 120.01641 * 180.02562 * 18 16 15 20 20 C 1.38198 * 119.98390 * 240.00507 * 13 2 1 21 21 H 1.09005 * 109.46912 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46942 * 299.99534 * 1 2 3 23 23 H 1.08996 * 109.46959 * 59.99984 * 1 2 3 24 24 H 0.97005 * 119.99878 * 179.97438 * 8 7 5 25 25 H 1.07992 * 119.98629 * 359.97438 * 14 13 2 26 26 H 1.07997 * 119.99677 * 180.29212 * 15 14 13 27 27 H 1.07995 * 120.00120 * 0.02562 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8531 -1.4780 5 6 1.5439 0.2424 -2.7257 6 1 0.9918 1.1286 -2.4494 7 6 1.7900 -0.0329 -4.0637 8 7 2.4633 -1.1127 -4.4004 9 14 1.1644 1.1281 -5.3867 10 1 2.1944 2.1606 -5.6664 11 1 0.8834 0.3605 -6.6264 12 1 -0.0818 1.7862 -4.9186 13 6 2.0324 -0.7104 1.2304 14 6 1.6935 -2.0326 1.4515 15 6 2.1583 -2.6869 2.5767 16 6 2.9537 -2.0157 3.4882 17 17 3.5323 -2.8352 4.9050 18 6 3.2883 -0.6902 3.2695 19 17 4.2870 0.1532 4.4120 20 6 2.8269 -0.0384 2.1399 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.6349 -1.3053 -5.3355 25 1 1.0686 -2.5554 0.7427 26 1 1.8971 -3.7209 2.7465 27 1 3.0872 0.9957 1.9690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172936940.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = -22.052612 kcal Electronic energy + Delta-G solvation = -14143.797863 eV Core-core repulsion = 11464.179062 eV Total energy + Delta-G solvation = -2679.618801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60709 -37.72366 -37.53556 -34.87560 -34.57268 -31.98645 -30.29083 -27.58450 -25.12075 -23.97366 -22.18459 -19.78158 -18.21927 -17.25761 -16.87510 -16.74007 -15.94742 -15.40233 -15.16696 -14.76809 -14.67250 -13.98820 -13.68420 -13.17561 -12.97200 -12.94745 -12.89991 -12.88727 -12.37482 -12.35477 -12.20514 -11.93628 -11.86441 -11.43209 -11.12120 -10.29453 -9.92973 -9.52624 -8.63047 -8.34408 -6.08611 -0.11032 0.08778 0.80496 1.15718 1.34430 1.40210 1.49671 1.70801 2.25590 2.54897 3.00954 3.28579 3.60079 3.71237 4.05613 4.13647 4.19156 4.40064 4.51184 4.72821 4.78775 4.93852 5.00366 5.06402 5.30141 5.46185 5.49969 5.58508 6.22500 7.09467 8.74313 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.004210 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.282048 B = 6649.994864 C = 6887.915976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.038 4.038 3 H 0.077 0.923 4 S -0.164 6.164 5 C -0.530 4.530 6 H 0.077 0.923 7 C 0.017 3.983 8 N -0.908 5.908 9 Si 0.986 3.014 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.262 1.262 13 C -0.039 4.039 14 C -0.091 4.091 15 C -0.090 4.090 16 C -0.043 4.043 17 Cl -0.048 7.048 18 C -0.034 4.034 19 Cl -0.050 7.050 20 C -0.097 4.097 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.270 0.730 25 H 0.143 0.857 26 H 0.167 0.833 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -0.389 16.187 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 H 0.095 0.905 4 S 0.068 5.932 5 C -0.678 4.678 6 H 0.095 0.905 7 C -0.188 4.188 8 N -0.545 5.545 9 Si 0.809 3.191 10 H -0.197 1.197 11 H -0.203 1.203 12 H -0.186 1.186 13 C -0.040 4.040 14 C -0.111 4.111 15 C -0.108 4.108 16 C -0.071 4.071 17 Cl -0.019 7.019 18 C -0.062 4.062 19 Cl -0.021 7.021 20 C -0.117 4.117 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.161 0.839 26 H 0.184 0.816 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.367 -1.453 16.133 16.203 hybrid contribution -0.598 1.699 -0.779 1.962 sum -0.965 0.246 15.354 15.387 Atomic orbital electron populations 1.21929 0.92024 1.02814 1.01668 1.22005 0.99606 1.00903 0.94163 0.90497 1.84827 1.74468 1.36409 0.97513 1.23053 1.40789 1.10968 0.92954 0.90503 1.25957 0.95015 0.97370 1.00418 1.70141 1.39164 1.26520 1.18673 0.85119 0.78896 0.77936 0.77133 1.19714 1.20331 1.18568 1.19511 0.96222 0.94647 0.93670 1.21267 0.99332 0.93629 0.96871 1.21228 0.95978 1.01433 0.92196 1.20843 1.01999 0.91761 0.92466 1.98368 1.87544 1.78200 1.37827 1.20715 0.99438 0.91994 0.94021 1.98369 1.67496 1.77244 1.58961 1.20977 0.97464 1.01279 0.91992 0.91678 0.90987 0.93254 0.92145 0.83898 0.81586 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.87 71.98 0.64 -3.49 15 2 C -0.04 -1.41 2.82 29.85 0.08 -1.32 15 3 H 0.08 2.86 7.87 -2.39 -0.02 2.84 15 4 S -0.16 -8.08 20.51 -56.49 -1.16 -9.24 15 5 C -0.53 -28.69 8.85 67.96 0.60 -28.09 15 6 H 0.08 4.00 7.14 -2.91 -0.02 3.97 15 7 C 0.02 0.95 5.49 84.86 0.47 1.41 15 8 N -0.91 -53.08 13.22 21.65 0.29 -52.79 15 9 Si 0.99 42.59 29.55 68.60 2.03 44.61 15 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 11 H -0.28 -11.71 7.11 99.48 0.71 -11.01 15 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 15 13 C -0.04 -1.21 4.78 -19.87 -0.09 -1.31 15 14 C -0.09 -2.59 8.78 22.27 0.20 -2.40 15 15 C -0.09 -2.16 9.83 22.29 0.22 -1.94 15 16 C -0.04 -1.06 6.32 22.35 0.14 -0.92 15 17 Cl -0.05 -1.07 27.96 -2.72 -0.08 -1.15 15 18 C -0.03 -0.90 6.32 22.34 0.14 -0.76 15 19 Cl -0.05 -1.19 27.96 -2.72 -0.08 -1.26 15 20 C -0.10 -2.74 9.45 22.29 0.21 -2.53 15 21 H 0.06 2.07 7.37 -2.38 -0.02 2.05 15 22 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.05 1.81 6.93 -2.39 -0.02 1.79 15 24 H 0.27 14.76 8.31 -92.70 -0.77 13.99 15 25 H 0.14 4.08 7.56 -2.91 -0.02 4.05 15 26 H 0.17 3.06 8.06 -2.91 -0.02 3.04 15 27 H 0.15 3.84 7.94 -2.91 -0.02 3.82 15 Total: -1.00 -60.25 281.39 4.80 -55.45 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.19 Total: 5.72 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 2.60 Total: -41.34 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.29 Total: -52.79 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.15 Total: -2.41 kcal Total: -60.25 4.80 -55.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172936940.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.401 kcal (2) G-P(sol) polarization free energy of solvation -60.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds