Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38187 * 119.61115 * 2 1 4 4 C 1.38670 * 119.19434 * 179.77080 * 3 2 1 5 5 C 1.38612 * 118.43454 * 0.49704 * 4 3 2 6 6 S 1.76197 * 120.42561 * 179.72340 * 5 4 3 7 7 O 1.42103 * 106.40201 * 357.70157 * 6 5 4 8 8 O 1.42102 * 106.39842 * 130.61844 * 6 5 4 9 9 N 1.65600 * 107.22242 * 244.16087 * 6 5 4 10 10 C 1.36940 * 119.99677 * 64.59116 * 9 6 5 11 11 H 1.07998 * 120.00285 * 5.46114 * 10 9 6 12 12 C 1.38811 * 119.99540 * 185.45108 * 10 9 6 13 13 N 1.31621 * 120.00241 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99779 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47039 * 60.00162 * 14 12 10 16 16 H 1.48496 * 109.47139 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47438 * 300.00311 * 14 12 10 18 18 C 1.38349 * 119.14895 * 359.74657 * 5 4 3 19 19 Cl 1.73607 * 119.63295 * 179.97438 * 18 5 4 20 20 N 1.31873 * 119.61025 * 180.27278 * 2 1 3 21 21 H 1.08999 * 109.47263 * 269.72783 * 1 2 3 22 22 H 1.09005 * 109.46933 * 29.72484 * 1 2 3 23 23 H 1.08998 * 109.47107 * 149.72474 * 1 2 3 24 24 H 1.08001 * 120.40564 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.78470 * 180.21641 * 4 3 2 26 26 H 0.96997 * 120.00007 * 244.59534 * 9 6 5 27 27 H 0.97000 * 119.99600 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5764 1.1913 0.0048 5 6 4.2276 -0.0323 -0.0010 6 16 5.9880 -0.1063 -0.0026 7 8 6.4460 1.2380 -0.0517 8 8 6.3523 -1.0144 1.0278 9 7 6.4479 -0.8094 -1.4297 10 6 6.1897 -0.1793 -2.6178 11 1 5.7666 0.8144 -2.6213 12 6 6.4720 -0.8177 -3.8176 13 7 6.9874 -2.0288 -3.8133 14 14 6.1205 0.0420 -5.4383 15 1 6.9026 1.3023 -5.5099 16 1 6.5077 -0.8459 -6.5638 17 1 4.6712 0.3529 -5.5297 18 6 3.4775 -1.1948 -0.0061 19 17 4.2800 -2.7342 -0.0142 20 7 2.1585 -1.1465 -0.0055 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 0.8925 -0.5096 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6500 2.1369 -0.0004 25 1 4.1359 2.1151 0.0085 26 1 6.9001 -1.6675 -1.4240 27 1 7.1843 -2.4750 -4.6518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185787874.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -47.141249 kcal Electronic energy + Delta-G solvation = -17358.090366 eV Core-core repulsion = 14268.967227 eV Total energy + Delta-G solvation = -3089.123140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99817 -36.45839 -35.90646 -34.75483 -34.65784 -32.92707 -32.04589 -31.10348 -27.71972 -24.66658 -23.45726 -22.37116 -18.61420 -18.26626 -17.32961 -16.92099 -16.12066 -15.83818 -14.79273 -14.57983 -14.31980 -14.13409 -13.54177 -13.19665 -12.90556 -12.58944 -12.21437 -12.06096 -11.40342 -11.22379 -11.15817 -11.02577 -10.95979 -10.77646 -10.63260 -10.57454 -10.29810 -10.01955 -9.79334 -9.33189 -8.76271 -8.40082 -6.65502 -4.01153 0.84596 1.30569 1.54093 2.08035 3.12253 3.14650 3.17015 3.62578 3.95318 4.33436 4.51022 4.67839 4.78387 4.94814 5.05196 5.33930 5.36693 5.47894 5.50302 5.82112 5.86467 6.08902 6.15703 6.62945 6.92963 7.32107 7.82172 8.52867 8.62383 9.09488 10.48306 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.008509 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.948856 B = 3289.736089 C = 3673.217144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.168 3.832 3 C -0.198 4.198 4 C 0.024 3.976 5 C -0.698 4.698 6 S 2.571 3.429 7 O -0.974 6.974 8 O -0.991 6.991 9 N -0.927 5.927 10 C -0.256 4.256 11 H 0.106 0.894 12 C 0.034 3.966 13 N -0.855 5.855 14 Si 0.925 3.075 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.271 1.271 18 C 0.267 3.733 19 Cl -0.006 7.006 20 N -0.498 5.498 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.142 0.858 25 H 0.156 0.844 26 H 0.413 0.587 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 3.606 3.023 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.031 3.969 3 C -0.219 4.219 4 C -0.002 4.002 5 C -0.777 4.777 6 S 2.661 3.339 7 O -0.963 6.963 8 O -0.979 6.979 9 N -0.678 5.678 10 C -0.402 4.402 11 H 0.124 0.876 12 C -0.177 4.177 13 N -0.496 5.496 14 Si 0.750 3.250 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.196 1.196 18 C 0.101 3.899 19 Cl 0.023 6.977 20 N -0.211 5.211 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.160 0.840 25 H 0.174 0.826 26 H 0.249 0.751 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.487 3.034 3.826 10.670 hybrid contribution -0.318 0.383 -1.120 1.225 sum -9.805 3.417 2.707 10.730 Atomic orbital electron populations 1.20783 0.88294 1.03834 1.03298 1.21310 0.96807 0.87608 0.91198 1.22049 0.95291 0.99238 1.05286 1.21391 0.94185 0.97045 0.87594 1.32953 1.34385 0.96712 1.13663 1.09208 0.74973 0.74600 0.75126 1.93428 1.79016 1.36474 1.87427 1.93431 1.82746 1.63766 1.57998 1.52046 1.59631 1.35544 1.20535 1.19460 1.39435 0.98254 0.83029 0.87602 1.25414 0.96799 0.95588 0.99894 1.69692 1.38439 1.12330 1.29139 0.86010 0.79268 0.79334 0.80371 1.19208 1.20436 1.19617 1.21061 0.89271 0.87342 0.92195 1.98458 1.75872 1.27661 1.95669 1.66889 1.08524 1.30150 1.15505 0.90038 0.90258 0.90117 0.84026 0.82645 0.75086 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.17 36.00 0.37 -0.73 15 2 C 0.17 2.59 6.78 -82.59 -0.56 2.03 15 3 C -0.20 -2.88 9.74 -39.44 -0.38 -3.27 15 4 C 0.02 0.42 9.66 -39.28 -0.38 0.04 15 5 C -0.70 -14.39 5.83 -39.40 -0.23 -14.62 15 6 S 2.57 58.52 5.02 -107.50 -0.54 57.98 15 7 O -0.97 -23.43 16.74 -57.17 -0.96 -24.39 15 8 O -0.99 -23.87 16.58 -57.17 -0.95 -24.82 15 9 N -0.93 -22.19 5.48 31.50 0.17 -22.02 15 10 C -0.26 -6.28 9.64 -15.06 -0.15 -6.42 15 11 H 0.11 2.47 7.79 -52.49 -0.41 2.06 15 12 C 0.03 0.82 5.50 -17.43 -0.10 0.73 15 13 N -0.86 -21.61 13.07 55.49 0.73 -20.88 15 14 Si 0.92 18.80 29.55 -169.99 -5.02 13.78 15 15 H -0.27 -5.35 7.11 56.52 0.40 -4.94 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 18 C 0.27 5.53 7.26 -17.45 -0.13 5.40 15 19 Cl -0.01 -0.11 26.66 -51.86 -1.38 -1.50 15 20 N -0.50 -9.39 10.25 -6.62 -0.07 -9.46 15 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.08 0.63 8.08 -51.93 -0.42 0.21 15 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.14 1.46 8.06 -52.49 -0.42 1.04 15 25 H 0.16 2.44 7.44 -52.49 -0.39 2.04 15 26 H 0.41 10.01 8.04 -34.47 -0.28 9.74 15 27 H 0.28 6.63 8.31 -40.82 -0.34 6.29 15 LS Contribution 273.25 15.07 4.12 4.12 Total: -1.00 -29.75 273.25 -7.36 -37.11 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -1.90 Total: 6.91 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.56 Total: -16.83 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.83 Total: -52.36 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -1.91 Total: -49.20 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: 58.52 SS G_CDS: -0.54 Total: 57.98 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.38 Total: -1.50 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.75 -7.36 -37.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185787874.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.032 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds