Wall clock time and date at job start Mon Mar 30 2020 01:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.08994 * 109.47233 * 55.21495 * 3 2 1 5 5 C 1.52994 * 109.47015 * 175.22230 * 3 2 1 6 6 N 1.46907 * 109.46716 * 294.82266 * 5 3 2 7 7 C 1.46895 * 110.99909 * 293.95378 * 6 5 3 8 8 C 1.52998 * 109.47098 * 163.97035 * 7 6 5 9 9 C 1.46906 * 110.99660 * 170.00007 * 6 5 3 10 10 C 1.52996 * 109.47224 * 284.33852 * 9 6 5 11 11 C 1.50696 * 109.46766 * 184.91724 * 10 9 6 12 12 H 1.08000 * 120.00618 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00170 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99413 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00457 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47161 * 60.00222 * 15 13 11 17 17 H 1.48502 * 109.47334 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47297 * 300.00000 * 15 13 11 19 19 C 1.50703 * 109.46786 * 295.21770 * 3 2 1 20 20 C 1.38231 * 120.00102 * 299.72315 * 19 3 2 21 21 C 1.38235 * 119.99931 * 179.78836 * 20 19 3 22 22 C 1.38234 * 120.00142 * 0.44900 * 21 20 19 23 23 C 1.38235 * 119.99821 * 359.80654 * 22 21 20 24 24 C 1.38234 * 119.99765 * 120.00234 * 19 3 2 25 25 H 1.09003 * 109.47319 * 176.09673 * 1 2 3 26 26 H 1.09001 * 109.47449 * 56.09511 * 1 2 3 27 27 H 1.09003 * 109.47170 * 296.09643 * 1 2 3 28 28 H 1.08996 * 109.47398 * 120.00302 * 2 1 3 29 29 H 1.09004 * 109.46565 * 239.99853 * 2 1 3 30 30 H 1.08998 * 109.47638 * 54.81843 * 5 3 2 31 31 H 1.09002 * 109.47209 * 174.82564 * 5 3 2 32 32 H 1.08997 * 109.47588 * 283.97184 * 7 6 5 33 33 H 1.09000 * 109.47442 * 43.97438 * 7 6 5 34 34 H 1.09002 * 109.47486 * 66.27200 * 8 7 6 35 35 H 1.09001 * 109.47374 * 186.27499 * 8 7 6 36 36 H 1.09007 * 109.47241 * 306.27328 * 8 7 6 37 37 H 1.09000 * 109.47034 * 44.34578 * 9 6 5 38 38 H 1.08996 * 109.46813 * 164.33681 * 9 6 5 39 39 H 1.08994 * 109.47201 * 304.91566 * 10 9 6 40 40 H 1.09000 * 109.46840 * 64.92223 * 10 9 6 41 41 H 0.97005 * 119.99834 * 179.97438 * 14 13 11 42 42 H 1.07999 * 120.00139 * 0.02562 * 20 19 3 43 43 H 1.08003 * 120.00468 * 180.27679 * 21 20 19 44 44 H 1.07998 * 120.00534 * 179.83075 * 22 21 20 45 45 H 1.08005 * 120.00253 * 180.02562 * 23 22 21 46 46 H 1.08002 * 120.00399 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9805 0.8440 5 6 3.5652 1.4442 0.1201 6 7 3.9539 0.8983 1.4275 7 6 3.5165 1.7807 2.5174 8 6 3.5704 1.0188 3.8431 9 6 5.4027 0.6628 1.4899 10 6 5.7497 -0.5956 0.6919 11 6 7.2154 -0.9054 0.8549 12 1 7.8372 -0.2687 1.4668 13 6 7.7626 -2.0023 0.2237 14 7 7.0053 -2.7779 -0.5210 15 14 9.5792 -2.3868 0.4262 16 1 9.8803 -2.6124 1.8628 17 1 9.9161 -3.6082 -0.3484 18 1 10.3858 -1.2451 -0.0752 19 6 1.6367 2.1178 -1.2855 20 6 2.0724 1.6146 -2.4969 21 6 1.6989 2.2315 -3.6762 22 6 0.8971 3.3571 -3.6436 23 6 0.4657 3.8635 -2.4319 24 6 0.8357 3.2440 -1.2528 25 1 -0.3634 -1.0253 -0.0700 26 1 -0.3634 0.5732 -0.8529 27 1 -0.3634 0.4521 0.9229 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.9928 0.8294 -0.6719 31 1 3.9359 2.4651 0.0279 32 1 4.1750 2.6476 2.5697 33 1 2.4950 2.1112 2.3297 34 1 4.6070 0.7851 4.0861 35 1 3.1418 1.6346 4.6338 36 1 3.0007 0.0937 3.7540 37 1 5.9284 1.5184 1.0661 38 1 5.7045 0.5292 2.5287 39 1 5.1581 -1.4338 1.0599 40 1 5.5284 -0.4297 -0.3624 41 1 7.3903 -3.5495 -0.9654 42 1 2.7016 0.7371 -2.5223 43 1 2.0356 1.8357 -4.6230 44 1 0.6075 3.8407 -4.5648 45 1 -0.1610 4.7427 -2.4064 46 1 0.4985 3.6396 -0.3060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186623291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:47 Heat of formation + Delta-G solvation = 2.285801 kcal Electronic energy + Delta-G solvation = -21649.587612 eV Core-core repulsion = 18731.046058 eV Total energy + Delta-G solvation = -2918.541554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65403 -37.68009 -34.91787 -33.07182 -30.92402 -30.83608 -30.56959 -29.46764 -27.01794 -24.39196 -23.27853 -22.73198 -22.15693 -21.49928 -20.07609 -19.10522 -16.89086 -16.30781 -15.63562 -15.10827 -14.88693 -14.57706 -14.34557 -13.96297 -13.94880 -13.47088 -13.37634 -13.26637 -12.80146 -12.43103 -12.33365 -12.12175 -11.87594 -11.57083 -11.34365 -11.15798 -11.08646 -10.98446 -10.89055 -10.73584 -10.67776 -10.51877 -10.29744 -10.03171 -9.70797 -9.32959 -9.08745 -8.85148 -8.57678 -8.29378 -7.64628 -5.96326 -3.98377 1.43752 1.46866 3.35022 3.39452 3.41751 3.85590 4.37496 4.54104 4.83023 4.96400 5.05731 5.11739 5.24051 5.34847 5.39467 5.41372 5.48296 5.57508 5.60929 5.61627 5.70879 5.82781 5.90172 5.93227 5.99642 6.10625 6.13397 6.21359 6.25470 6.29510 6.32385 6.41278 6.48667 6.53171 6.54960 6.57795 6.60971 6.73618 6.86819 7.06282 7.09124 7.56978 7.62081 7.84456 7.97211 8.14329 8.47827 9.08918 9.64961 11.14913 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.004461 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.494849 B = 6275.366363 C = 7136.137671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.046 4.046 4 H 0.074 0.926 5 C 0.065 3.935 6 N -0.534 5.534 7 C 0.046 3.954 8 C -0.145 4.145 9 C 0.061 3.939 10 C 0.033 3.967 11 C -0.522 4.522 12 H 0.052 0.948 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.063 4.063 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.121 4.121 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 11.223 -0.998 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.064 4.064 4 H 0.092 0.908 5 C -0.063 4.063 6 N -0.258 5.258 7 C -0.082 4.082 8 C -0.203 4.203 9 C -0.065 4.065 10 C -0.005 4.005 11 C -0.561 4.561 12 H 0.070 0.930 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.063 4.063 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.522 10.608 -1.039 18.014 hybrid contribution 1.473 0.597 -0.130 1.595 sum -13.049 11.205 -1.169 17.239 Atomic orbital electron populations 1.21794 0.96791 1.01070 1.01044 1.21486 0.94441 0.94994 1.03653 1.20303 0.95910 0.96631 0.93595 0.90753 1.22120 0.93532 0.97673 0.92986 1.62137 1.17080 1.45244 1.01329 1.22098 0.99576 0.94094 0.92428 1.21761 1.02275 1.00663 0.95578 1.22383 0.83677 0.99452 1.01032 1.19022 0.95504 0.91369 0.94556 1.21179 0.94642 1.10529 1.29773 0.92993 1.24969 0.97695 0.96205 0.95292 1.69963 1.35422 1.16117 1.31700 0.86696 0.85693 0.77643 0.78167 1.20265 1.21293 1.20354 1.19940 0.96282 0.94929 0.95173 1.21152 0.99619 1.00221 0.91891 1.21161 0.98175 0.96045 0.98240 1.21079 0.99171 0.97072 0.97670 1.21070 1.00445 0.99904 0.92692 1.21042 0.98935 0.95925 0.98016 0.93133 0.93222 0.93352 0.89826 0.91973 0.89774 0.95738 0.95808 0.91574 0.92557 0.93300 0.91847 0.96390 0.91932 0.95661 0.96869 0.93016 0.85619 0.86251 0.86590 0.86564 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.79 37.16 0.36 -1.45 16 2 C -0.11 -1.54 5.24 -26.73 -0.14 -1.68 16 3 C -0.05 -0.63 1.99 -91.77 -0.18 -0.81 16 4 H 0.07 0.96 5.83 -51.93 -0.30 0.66 16 5 C 0.06 1.07 3.91 -3.82 -0.01 1.06 16 6 N -0.53 -9.43 3.77 -234.63 -0.89 -10.32 16 7 C 0.05 0.68 5.55 -3.83 -0.02 0.66 16 8 C -0.15 -2.02 9.87 37.16 0.37 -1.65 16 9 C 0.06 1.29 4.76 -3.82 -0.02 1.27 16 10 C 0.03 0.85 5.01 -27.89 -0.14 0.71 16 11 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.06 -0.82 3.69 -104.62 -0.39 -1.21 16 20 C -0.11 -1.49 8.71 -39.58 -0.34 -1.84 16 21 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.12 -1.43 9.67 -39.58 -0.38 -1.81 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.60 7.25 -51.93 -0.38 0.22 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.33 7.63 -51.93 -0.40 0.93 16 29 H 0.06 0.94 7.25 -51.93 -0.38 0.57 16 30 H 0.08 1.57 6.13 -51.93 -0.32 1.25 16 31 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.02 0.35 8.05 -51.93 -0.42 -0.06 16 33 H 0.07 0.87 5.87 -51.93 -0.30 0.57 16 34 H 0.06 0.85 6.75 -51.93 -0.35 0.50 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 37 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 38 H 0.06 1.31 6.35 -51.93 -0.33 0.98 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.01 0.36 6.94 -51.93 -0.36 0.00 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.13 1.77 7.14 -52.49 -0.37 1.39 16 43 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.12 1.19 7.95 -52.49 -0.42 0.78 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -29.68 361.00 -10.32 -40.00 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.09 Total: -0.08 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.50 Total: -25.66 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.15 Total: -36.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.68 -10.32 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186623291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.284 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds