Wall clock time and date at job start Mon Mar 30 2020 01:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.08994 * 109.47233 * 55.21495 * 3 2 1 5 5 C 1.52994 * 109.47015 * 175.22230 * 3 2 1 6 6 N 1.46907 * 109.46716 * 294.82266 * 5 3 2 7 7 C 1.46895 * 110.99909 * 293.95378 * 6 5 3 8 8 C 1.52998 * 109.47098 * 163.97035 * 7 6 5 9 9 C 1.46906 * 110.99660 * 170.00007 * 6 5 3 10 10 C 1.52996 * 109.47224 * 284.33852 * 9 6 5 11 11 C 1.50696 * 109.46766 * 184.91724 * 10 9 6 12 12 H 1.08000 * 120.00618 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00170 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99413 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00457 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47161 * 60.00222 * 15 13 11 17 17 H 1.48502 * 109.47334 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47297 * 300.00000 * 15 13 11 19 19 C 1.50703 * 109.46786 * 295.21770 * 3 2 1 20 20 C 1.38231 * 120.00102 * 299.72315 * 19 3 2 21 21 C 1.38235 * 119.99931 * 179.78836 * 20 19 3 22 22 C 1.38234 * 120.00142 * 0.44900 * 21 20 19 23 23 C 1.38235 * 119.99821 * 359.80654 * 22 21 20 24 24 C 1.38234 * 119.99765 * 120.00234 * 19 3 2 25 25 H 1.09003 * 109.47319 * 176.09673 * 1 2 3 26 26 H 1.09001 * 109.47449 * 56.09511 * 1 2 3 27 27 H 1.09003 * 109.47170 * 296.09643 * 1 2 3 28 28 H 1.08996 * 109.47398 * 120.00302 * 2 1 3 29 29 H 1.09004 * 109.46565 * 239.99853 * 2 1 3 30 30 H 1.08998 * 109.47638 * 54.81843 * 5 3 2 31 31 H 1.09002 * 109.47209 * 174.82564 * 5 3 2 32 32 H 1.08997 * 109.47588 * 283.97184 * 7 6 5 33 33 H 1.09000 * 109.47442 * 43.97438 * 7 6 5 34 34 H 1.09002 * 109.47486 * 66.27200 * 8 7 6 35 35 H 1.09001 * 109.47374 * 186.27499 * 8 7 6 36 36 H 1.09007 * 109.47241 * 306.27328 * 8 7 6 37 37 H 1.09000 * 109.47034 * 44.34578 * 9 6 5 38 38 H 1.08996 * 109.46813 * 164.33681 * 9 6 5 39 39 H 1.08994 * 109.47201 * 304.91566 * 10 9 6 40 40 H 1.09000 * 109.46840 * 64.92223 * 10 9 6 41 41 H 0.97005 * 119.99834 * 179.97438 * 14 13 11 42 42 H 1.07999 * 120.00139 * 0.02562 * 20 19 3 43 43 H 1.08003 * 120.00468 * 180.27679 * 21 20 19 44 44 H 1.07998 * 120.00534 * 179.83075 * 22 21 20 45 45 H 1.08005 * 120.00253 * 180.02562 * 23 22 21 46 46 H 1.08002 * 120.00399 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9805 0.8440 5 6 3.5652 1.4442 0.1201 6 7 3.9539 0.8983 1.4275 7 6 3.5165 1.7807 2.5174 8 6 3.5704 1.0188 3.8431 9 6 5.4027 0.6628 1.4899 10 6 5.7497 -0.5956 0.6919 11 6 7.2154 -0.9054 0.8549 12 1 7.8372 -0.2687 1.4668 13 6 7.7626 -2.0023 0.2237 14 7 7.0053 -2.7779 -0.5210 15 14 9.5792 -2.3868 0.4262 16 1 9.8803 -2.6124 1.8628 17 1 9.9161 -3.6082 -0.3484 18 1 10.3858 -1.2451 -0.0752 19 6 1.6367 2.1178 -1.2855 20 6 2.0724 1.6146 -2.4969 21 6 1.6989 2.2315 -3.6762 22 6 0.8971 3.3571 -3.6436 23 6 0.4657 3.8635 -2.4319 24 6 0.8357 3.2440 -1.2528 25 1 -0.3634 -1.0253 -0.0700 26 1 -0.3634 0.5732 -0.8529 27 1 -0.3634 0.4521 0.9229 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.9928 0.8294 -0.6719 31 1 3.9359 2.4651 0.0279 32 1 4.1750 2.6476 2.5697 33 1 2.4950 2.1112 2.3297 34 1 4.6070 0.7851 4.0861 35 1 3.1418 1.6346 4.6338 36 1 3.0007 0.0937 3.7540 37 1 5.9284 1.5184 1.0661 38 1 5.7045 0.5292 2.5287 39 1 5.1581 -1.4338 1.0599 40 1 5.5284 -0.4297 -0.3624 41 1 7.3903 -3.5495 -0.9654 42 1 2.7016 0.7371 -2.5223 43 1 2.0356 1.8357 -4.6230 44 1 0.6075 3.8407 -4.5648 45 1 -0.1610 4.7427 -2.4064 46 1 0.4985 3.6396 -0.3060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186623291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:47 Heat of formation + Delta-G solvation = -12.057502 kcal Electronic energy + Delta-G solvation = -21650.209585 eV Core-core repulsion = 18731.046058 eV Total energy + Delta-G solvation = -2919.163527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69446 -38.98874 -36.16373 -35.11954 -32.45463 -31.77250 -31.70718 -30.90911 -28.45635 -26.23301 -24.47149 -23.77490 -23.21142 -23.05837 -21.54302 -20.34124 -18.53768 -17.83093 -16.82119 -16.53101 -16.39033 -15.91434 -15.63209 -15.34711 -15.06156 -14.71633 -14.56543 -14.43112 -14.15818 -14.12287 -13.55677 -13.36955 -13.22032 -12.96035 -12.84553 -12.62044 -12.52448 -12.39584 -12.33393 -12.04155 -11.96422 -11.81664 -11.55780 -11.46047 -11.37841 -11.24201 -11.03494 -10.52546 -9.77029 -9.54353 -9.10974 -8.18946 -6.30394 0.50558 0.54799 1.39209 1.42473 1.50320 2.40322 2.89880 3.10083 3.14172 3.73520 3.91107 4.13506 4.16539 4.20324 4.22769 4.32250 4.37433 4.40196 4.46334 4.56962 4.60138 4.67685 4.70473 4.73571 4.78428 4.87079 4.99452 5.03216 5.08854 5.09862 5.14580 5.17833 5.22233 5.29255 5.39158 5.43776 5.47806 5.53881 5.64812 5.67728 5.69184 5.81541 5.83756 6.15281 6.17770 6.36158 6.38816 6.86845 7.38546 8.92842 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.004461 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.494849 B = 6275.366363 C = 7136.137671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.032 4.032 4 H 0.092 0.908 5 C 0.071 3.929 6 N -0.542 5.542 7 C 0.046 3.954 8 C -0.141 4.141 9 C 0.078 3.922 10 C 0.045 3.955 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.076 4.076 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.014 0.986 38 H 0.066 0.934 39 H -0.007 1.007 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.239 13.372 -0.260 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C -0.050 4.050 4 H 0.110 0.890 5 C -0.057 4.057 6 N -0.266 5.266 7 C -0.082 4.082 8 C -0.199 4.199 9 C -0.049 4.049 10 C 0.007 3.993 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.076 4.076 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.011 0.989 40 H 0.003 0.997 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.147 0.853 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.471 12.771 -0.291 20.063 hybrid contribution 1.714 -0.056 -0.413 1.764 sum -13.757 12.714 -0.703 18.746 Atomic orbital electron populations 1.21700 0.94568 1.01504 1.01921 1.21405 0.96314 0.95117 1.01485 1.20158 0.93422 0.96490 0.94941 0.88958 1.22041 0.95708 0.96568 0.91401 1.62051 1.14571 1.47106 1.02896 1.22224 1.00792 0.93654 0.91490 1.21745 1.01363 1.00792 0.96005 1.21993 0.86193 0.96751 0.99968 1.18812 0.94390 0.92607 0.93476 1.21619 0.95821 1.11022 1.30046 0.92368 1.25932 1.02928 0.95895 0.94670 1.70112 1.37761 1.16636 1.32531 0.85527 0.79333 0.77682 0.78654 1.19060 1.20753 1.19285 1.19876 0.97540 0.95973 0.94253 1.21125 1.00508 1.00303 0.93244 1.21360 0.98605 0.96702 0.98043 1.21430 0.98060 0.96266 0.99127 1.21457 0.99963 1.00412 0.92069 1.21292 0.98213 0.95074 0.99533 0.92915 0.92968 0.91743 0.91871 0.94307 0.93285 0.95680 0.95332 0.89187 0.94154 0.90130 0.92749 0.96798 0.91587 0.98860 0.99683 0.92822 0.87998 0.85297 0.83955 0.83551 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.79 71.98 0.70 -2.57 16 2 C -0.11 -3.12 5.24 30.59 0.16 -2.96 16 3 C -0.03 -0.87 1.99 -11.54 -0.02 -0.89 16 4 H 0.09 2.20 5.83 -2.39 -0.01 2.18 16 5 C 0.07 2.44 3.91 86.30 0.34 2.78 16 6 N -0.54 -19.65 3.77 -896.24 -3.38 -23.04 16 7 C 0.05 1.29 5.55 86.30 0.48 1.77 16 8 C -0.14 -3.74 9.87 71.98 0.71 -3.03 16 9 C 0.08 3.44 4.76 86.30 0.41 3.85 16 10 C 0.04 2.46 5.01 29.85 0.15 2.61 16 11 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.00 0.22 5.46 84.66 0.46 0.69 16 14 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 15 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C -0.08 -1.97 3.69 -19.87 -0.07 -2.04 16 20 C -0.13 -3.77 8.71 22.27 0.19 -3.57 16 21 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 22 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 23 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 24 C -0.12 -2.60 9.67 22.27 0.22 -2.38 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.20 7.25 -2.39 -0.02 1.18 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.06 2.10 7.63 -2.39 -0.02 2.08 16 29 H 0.04 1.29 7.25 -2.38 -0.02 1.28 16 30 H 0.05 2.02 6.13 -2.39 -0.01 2.00 16 31 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.03 0.79 8.05 -2.39 -0.02 0.78 16 33 H 0.09 2.13 5.87 -2.39 -0.01 2.11 16 34 H 0.04 1.18 6.75 -2.39 -0.02 1.16 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.01 0.61 8.00 -2.39 -0.02 0.59 16 38 H 0.07 2.83 6.35 -2.39 -0.02 2.81 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H -0.02 -0.91 6.94 -2.39 -0.02 -0.93 16 41 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.10 3.25 7.14 -2.91 -0.02 3.23 16 43 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.14 2.29 7.95 -2.91 -0.02 2.27 16 Total: -1.00 -66.48 361.00 4.48 -62.00 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.92 Total: 16.33 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 4.63 Total: -44.72 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -3.10 Total: -80.67 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.48 4.48 -62.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186623291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.947 kcal (2) G-P(sol) polarization free energy of solvation -66.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds