Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99942 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00096 * 3 2 1 6 6 H 1.48505 * 109.47119 * 150.00100 * 3 2 1 7 7 C 1.39076 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00499 * 0.02562 * 7 2 1 9 9 N 1.36775 * 120.00177 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00431 * 179.72851 * 9 7 2 11 11 O 1.21689 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.46996 * 120.00081 * 179.97438 * 10 9 7 13 13 N 1.30660 * 125.52990 * 179.97438 * 12 10 9 14 14 C 1.30690 * 115.89815 * 179.97438 * 13 12 10 15 15 C 1.34395 * 115.75546 * 359.97438 * 14 13 12 16 16 Br 1.89097 * 125.45015 * 180.02562 * 15 14 13 17 17 S 1.71073 * 109.09416 * 359.75489 * 15 14 13 18 18 H 0.96999 * 119.99900 * 359.97438 * 1 2 3 19 19 H 0.97005 * 119.99722 * 0.02562 * 9 7 2 20 20 H 1.07997 * 122.11618 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0464 -1.4001 5 1 1.4449 2.6527 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2044 0.0005 8 1 1.4689 -2.1398 0.0005 9 7 3.3765 -1.2045 0.0000 10 6 4.0505 -2.3717 0.0061 11 8 3.4420 -3.4255 0.0125 12 6 5.5204 -2.3717 0.0049 13 7 6.2797 -3.4350 0.0108 14 6 7.5682 -3.2163 0.0079 15 6 7.9414 -1.9252 -0.0012 16 35 9.7258 -1.2994 -0.0080 17 16 6.5438 -0.9388 -0.0133 18 1 -0.4850 0.8400 0.0004 19 1 3.8616 -0.3644 -0.0004 20 1 8.2873 -4.0220 0.0126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189533247.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = 17.320993 kcal Electronic energy + Delta-G solvation = -11427.835543 eV Core-core repulsion = 8991.246915 eV Total energy + Delta-G solvation = -2436.588627 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 275.931 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65882 -38.15901 -34.38325 -32.34099 -32.10632 -29.16429 -26.53194 -24.55258 -21.39583 -19.65367 -18.59541 -18.07398 -16.23235 -15.38963 -14.89521 -14.84486 -13.95529 -13.41640 -13.23645 -13.04804 -12.57634 -11.85036 -11.53346 -11.28590 -10.87385 -10.55155 -10.35715 -9.97158 -9.78824 -9.31433 -8.83291 -8.72739 -8.59032 -6.77149 -4.13186 0.24429 0.87148 1.58049 1.77859 2.57086 2.84021 2.88537 2.94371 3.74853 3.83155 3.84376 4.90094 4.92045 5.18166 5.46895 6.03099 7.06073 7.60510 7.77370 8.16532 8.50282 8.93066 9.40322 10.31851 Molecular weight = 275.93amu Principal moments of inertia in cm(-1) A = 0.037184 B = 0.005659 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.835850 B = 4946.740257 C = 5689.716450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.048 3.952 3 Si 0.874 3.126 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.283 4.283 8 H 0.133 0.867 9 N -0.547 5.547 10 C 0.490 3.510 11 O -0.542 6.542 12 C 0.070 3.930 13 N -0.429 5.429 14 C 0.088 3.912 15 C -0.292 4.292 16 Br 0.016 6.984 17 S 0.165 5.835 18 H 0.284 0.716 19 H 0.372 0.628 20 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.217 3.702 -0.067 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.162 4.162 3 Si 0.698 3.302 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.414 4.414 8 H 0.151 0.849 9 N -0.185 5.185 10 C 0.275 3.725 11 O -0.425 6.425 12 C -0.205 4.205 13 N -0.145 5.145 14 C -0.073 4.073 15 C -0.495 4.495 16 Br 0.099 6.901 17 S 0.420 5.580 18 H 0.095 0.905 19 H 0.206 0.794 20 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 17.788 3.898 -0.082 18.210 hybrid contribution 1.027 0.509 0.034 1.147 sum 18.815 4.408 -0.048 19.324 Atomic orbital electron populations 1.69574 1.05907 1.28936 1.43130 1.25200 0.95698 0.98658 0.96600 0.86709 0.80342 0.83188 0.79991 1.18481 1.18987 1.18699 1.19694 0.78490 0.97523 1.45697 0.84917 1.42175 1.08026 1.05810 1.62494 1.15988 0.82167 0.85274 0.89022 1.90756 1.65980 1.30150 1.55566 1.28359 0.99694 0.89422 1.03075 1.66870 1.02597 1.29678 1.15312 1.21878 0.92069 0.94399 0.98966 1.26894 0.97983 1.00185 1.24423 1.96644 1.07586 1.87830 1.98075 1.83916 0.95145 1.12491 1.66407 0.90460 0.79421 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.00 13.95 55.50 0.77 -21.23 14 2 C 0.05 1.18 5.50 -17.45 -0.10 1.08 14 3 Si 0.87 17.40 27.74 -169.99 -4.71 12.68 14 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 6 H -0.26 -4.78 6.52 56.52 0.37 -4.41 14 7 C -0.28 -7.40 10.16 -15.04 -0.15 -7.55 14 8 H 0.13 3.93 7.38 -52.49 -0.39 3.54 14 9 N -0.55 -12.69 5.08 -12.09 -0.06 -12.75 14 10 C 0.49 11.73 7.75 -12.71 -0.10 11.63 14 11 O -0.54 -15.15 16.64 5.20 0.09 -15.07 14 12 C 0.07 1.41 7.45 -14.50 -0.11 1.30 14 13 N -0.43 -8.42 10.60 -11.53 -0.12 -8.54 14 14 C 0.09 1.37 11.19 -19.39 -0.22 1.15 14 15 C -0.29 -4.23 6.82 29.38 0.20 -4.03 14 16 Br 0.02 0.19 34.08 -68.01 -2.32 -2.13 14 17 S 0.17 2.60 22.30 -107.50 -2.40 0.20 14 18 H 0.28 6.77 8.31 -40.82 -0.34 6.44 14 19 H 0.37 7.57 4.89 -40.82 -0.20 7.37 14 20 H 0.18 2.19 8.06 -52.49 -0.42 1.77 14 LS Contribution 228.62 15.07 3.45 3.45 Total: -1.00 -28.59 228.62 -5.96 -34.54 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -0.18 Total: 5.27 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.47 Total: 3.57 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.59 Total: -42.52 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.07 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -4.71 Total: 12.68 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.40 Total: 0.20 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -2.32 Total: -2.13 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.59 -5.96 -34.54 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189533247.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.864 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds