Wall clock time and date at job start Mon Mar 30 2020 01:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21711 * 120.00355 * 0.02562 * 13 12 2 15 15 C 1.46546 * 119.99772 * 180.02562 * 13 12 2 16 16 C 1.37960 * 126.22549 * 179.69150 * 15 13 12 17 17 C 1.39786 * 107.13008 * 179.84639 * 16 15 13 18 18 Cl 1.73595 * 126.06311 * 180.15511 * 17 16 15 19 19 C 1.35725 * 107.87606 * 0.42325 * 17 16 15 20 20 Cl 1.73605 * 125.58505 * 179.72120 * 19 17 16 21 21 N 1.35666 * 108.82836 * 359.73339 * 19 17 16 22 22 H 0.97008 * 125.69092 * 179.97438 * 21 19 17 23 23 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 24 24 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 25 25 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 26 26 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 28 28 H 1.07996 * 126.43373 * 359.96352 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8573 1.1624 2.4119 15 6 2.6360 -0.7093 3.5534 16 6 2.8221 -0.1483 4.8000 17 6 3.2948 -1.1602 5.6405 18 17 3.6886 -0.9907 7.3227 19 6 3.3970 -2.2974 4.9067 20 17 3.9469 -3.8346 5.4971 21 7 2.9993 -2.0360 3.6363 22 1 2.9751 -2.6761 2.9078 23 1 -0.3633 0.5890 -0.8422 24 1 -0.3633 0.4348 0.9311 25 1 -0.3634 -1.0238 -0.0891 26 1 2.9363 -0.1045 -4.2556 27 1 2.2490 -1.6319 1.1524 28 1 2.6356 0.8793 5.0752 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194651609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:30 Heat of formation + Delta-G solvation = -32.912189 kcal Electronic energy + Delta-G solvation = -16508.821042 eV Core-core repulsion = 13418.271214 eV Total energy + Delta-G solvation = -3090.549828 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.61211 -40.26855 -37.91055 -37.51426 -36.82478 -34.47951 -32.49826 -31.87706 -29.86084 -27.35353 -24.65707 -22.51957 -21.72696 -21.41581 -20.62571 -18.81910 -17.37209 -17.29102 -16.58341 -16.07666 -15.75671 -15.48009 -15.04201 -14.81601 -14.54568 -14.45425 -14.21184 -13.36561 -13.05667 -12.99408 -12.85462 -12.81205 -12.50216 -12.46133 -11.96997 -11.88922 -11.26811 -11.20352 -10.85378 -10.18502 -10.01302 -9.35873 -8.40894 -6.48146 0.07488 0.32331 1.02151 1.08075 1.30413 1.35846 1.45044 2.01245 2.21134 2.26162 2.34289 3.01365 3.70842 3.78012 4.24466 4.44496 4.48691 4.71594 4.79724 5.01087 5.07806 5.22708 5.34528 5.43247 5.60431 5.87367 6.07720 6.55719 6.71771 7.12778 7.24973 8.73534 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.004326 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.034080 B = 6471.240091 C = 6981.548050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.235 3.765 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.927 5.927 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.253 1.253 12 N -0.697 5.697 13 C 0.579 3.421 14 O -0.572 6.572 15 C -0.018 4.018 16 C -0.094 4.094 17 C -0.109 4.109 18 Cl -0.022 7.022 19 C 0.105 3.895 20 Cl 0.020 6.980 21 N -0.508 5.508 22 H 0.440 0.560 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.271 0.729 27 H 0.402 0.598 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -5.104 18.622 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.132 3.868 3 H 0.053 0.947 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.565 5.565 8 Si 0.748 3.252 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.176 1.176 12 N -0.345 5.345 13 C 0.366 3.634 14 O -0.452 6.452 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.143 4.143 18 Cl 0.007 6.993 19 C -0.041 4.041 20 Cl 0.049 6.951 21 N -0.110 5.110 22 H 0.282 0.718 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.237 0.763 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.366 -4.472 18.444 19.027 hybrid contribution 0.331 -0.176 -0.677 0.774 sum 1.697 -4.648 17.766 18.442 Atomic orbital electron populations 1.22130 0.96705 1.01503 0.99843 1.18971 0.92224 0.93283 0.82363 0.94655 1.21148 1.44664 0.94867 0.95969 0.92240 1.25594 0.93620 1.02391 0.94991 1.69964 1.46276 1.37823 1.02473 0.86096 0.79871 0.81396 0.77790 1.19942 1.20412 1.17645 1.46310 1.64827 1.14142 1.09216 1.17225 0.77896 0.86112 0.82205 1.90808 1.53165 1.16244 1.85003 1.20235 1.13035 0.83742 0.96277 1.21248 1.01266 1.00140 0.89374 1.19607 1.13207 0.93109 0.88405 1.98341 1.92796 1.97685 1.10499 1.20662 1.07714 0.90037 0.85677 1.98434 1.87257 1.23873 1.85546 1.41874 1.49532 1.09982 1.09617 0.71780 0.93076 0.94091 0.92237 0.91962 0.76305 0.81376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 9.47 71.98 0.68 -5.09 15 2 C 0.23 10.42 2.22 44.25 0.10 10.52 15 3 H 0.04 1.72 4.73 -2.39 -0.01 1.71 15 4 C -0.53 -27.03 9.05 25.60 0.23 -26.80 15 5 H 0.06 3.21 8.06 -2.91 -0.02 3.19 15 6 C 0.04 1.90 5.47 84.66 0.46 2.36 15 7 N -0.93 -53.42 13.96 21.45 0.30 -53.12 15 8 Si 0.92 42.84 26.99 68.60 1.85 44.70 15 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 15 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 11 H -0.25 -11.34 6.82 99.48 0.68 -10.66 15 12 N -0.70 -25.37 5.06 -450.19 -2.28 -27.65 15 13 C 0.58 20.72 7.75 86.41 0.67 21.39 15 14 O -0.57 -24.62 16.54 -4.38 -0.07 -24.70 15 15 C -0.02 -0.51 7.06 40.31 0.28 -0.23 15 16 C -0.09 -2.44 10.64 22.58 0.24 -2.20 15 17 C -0.11 -2.49 6.66 22.06 0.15 -2.35 15 18 Cl -0.02 -0.44 29.12 -2.72 -0.08 -0.52 15 19 C 0.10 2.20 7.75 83.52 0.65 2.85 15 20 Cl 0.02 0.35 29.13 -2.72 -0.08 0.27 15 21 N -0.51 -10.91 6.01 -174.50 -1.05 -11.96 15 22 H 0.44 7.34 8.19 -92.70 -0.76 6.58 15 23 H 0.05 2.08 8.14 -2.38 -0.02 2.06 15 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.40 12.26 7.72 -92.71 -0.72 11.55 15 28 H 0.17 4.22 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -61.81 283.38 1.78 -60.03 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -0.27 Total: 12.49 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 3.46 Total: 0.46 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -3.03 Total: -92.73 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.07 Total: -24.70 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.85 Total: 44.70 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.16 Total: -0.25 kcal Total: -61.81 1.78 -60.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194651609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.116 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds