Wall clock time and date at job start Mon Mar 30 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99673 * 2 1 4 4 C 1.53001 * 109.47272 * 293.95552 * 3 2 1 5 5 C 1.52998 * 109.47185 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47146 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99583 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99647 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00293 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99410 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47635 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47060 * 120.00289 * 10 8 6 13 13 H 1.48501 * 109.46958 * 239.99986 * 10 8 6 14 14 C 1.46896 * 111.00218 * 123.95513 * 2 1 3 15 15 C 1.53004 * 109.47038 * 66.04625 * 14 2 1 16 16 C 1.52997 * 109.46958 * 180.02562 * 15 14 2 17 17 C 1.52995 * 109.47085 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 1.09005 * 109.47188 * 296.04322 * 1 2 3 25 25 H 1.09000 * 109.47569 * 56.04529 * 1 2 3 26 26 H 1.09004 * 109.47111 * 176.04543 * 1 2 3 27 27 H 1.08997 * 109.46894 * 53.95738 * 3 2 1 28 28 H 1.09000 * 109.46804 * 173.95862 * 3 2 1 29 29 H 1.09001 * 109.46719 * 300.00344 * 4 3 2 30 30 H 1.08996 * 109.47155 * 59.99677 * 4 3 2 31 31 H 1.09003 * 109.46886 * 300.00035 * 5 4 3 32 32 H 1.08992 * 109.47352 * 59.99729 * 5 4 3 33 33 H 0.97002 * 120.00192 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47247 * 306.04758 * 14 2 1 35 35 H 1.08996 * 109.47342 * 186.04815 * 14 2 1 36 36 H 1.08992 * 109.47400 * 60.00161 * 15 14 2 37 37 H 1.08999 * 109.46626 * 299.99822 * 15 14 2 38 38 H 1.08995 * 109.47671 * 59.99728 * 16 15 14 39 39 H 1.09004 * 109.46984 * 299.99744 * 16 15 14 40 40 H 1.09005 * 109.47610 * 59.99944 * 17 16 15 41 41 H 1.09000 * 109.47256 * 299.99285 * 17 16 15 42 42 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 43 43 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 44 44 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 45 45 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 46 46 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1801 3.4857 -1.3185 6 6 1.8221 4.1612 -2.6172 7 1 1.2597 3.6253 -3.3675 8 6 2.2124 5.4634 -2.8474 9 7 2.8976 6.1157 -1.9339 10 14 1.7680 6.3009 -4.4569 11 1 0.9997 5.3587 -5.3096 12 1 0.9408 7.5022 -4.1779 13 1 3.0096 6.7079 -5.1624 14 6 1.9955 -0.7660 1.1375 15 6 1.6315 -2.2426 0.9702 16 6 2.1793 -3.0403 2.1553 17 6 1.8148 -4.5168 1.9884 18 6 2.3549 -5.3027 3.1554 19 6 1.5814 -5.4785 4.2876 20 6 2.0767 -6.1998 5.3578 21 6 3.3451 -6.7457 5.2957 22 6 4.1206 -6.5654 4.1657 23 6 3.6236 -5.8481 3.0936 24 1 -0.3634 0.4512 0.9234 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0253 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0797 1.3445 0.1082 29 1 2.0657 1.5016 -2.1491 30 1 0.5471 2.0845 -1.4265 31 1 1.7461 4.0418 -0.4875 32 1 3.2643 3.4584 -1.2104 33 1 3.1725 7.0317 -2.0960 34 1 1.5611 -0.3873 2.0628 35 1 3.0797 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7447 -2.6615 3.0803 39 1 3.2636 -2.9355 2.1937 40 1 2.2491 -4.8960 1.0633 41 1 0.7305 -4.6213 1.9503 42 1 0.5902 -5.0523 4.3359 43 1 1.4725 -6.3368 6.2424 44 1 3.7318 -7.3096 6.1317 45 1 5.1133 -6.9882 4.1188 46 1 4.2276 -5.7113 2.2088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195234995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:49 Heat of formation + Delta-G solvation = -7.946082 kcal Electronic energy + Delta-G solvation = -19774.739243 eV Core-core repulsion = 16855.754001 eV Total energy + Delta-G solvation = -2918.985242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.60537 -37.88485 -35.39317 -33.64564 -32.06660 -31.17441 -30.81471 -28.03659 -27.08215 -25.44703 -23.49099 -22.86040 -21.83178 -20.98103 -20.57491 -19.79698 -17.04514 -16.28797 -16.02453 -15.48757 -15.35921 -15.27142 -14.54088 -14.31207 -14.18499 -13.74809 -13.63682 -13.36664 -13.30072 -12.63928 -12.33066 -12.21227 -12.07118 -11.70285 -11.57834 -11.42426 -11.31419 -11.13790 -11.00939 -10.90811 -10.78015 -10.55976 -10.46027 -10.38421 -9.56515 -9.29083 -9.21379 -9.01799 -8.93575 -8.31473 -8.01394 -5.96578 -3.98366 1.06955 1.10784 3.33296 3.40520 3.45270 3.48796 4.15206 4.48940 4.53080 4.53827 4.71118 4.82597 4.83290 4.91540 5.12511 5.19835 5.26386 5.32667 5.39205 5.43903 5.50562 5.60515 5.64524 5.66046 5.72831 5.78043 5.83145 5.86673 5.94947 6.02669 6.13326 6.18086 6.21663 6.22804 6.29451 6.37881 6.38710 6.72373 6.75513 6.83059 7.17132 7.42240 7.45734 7.72889 7.88013 8.04388 8.48022 9.09183 9.65458 11.14949 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.050003 B = 0.001998 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.826953 B =14009.381357 C =14167.526861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.054 3.946 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.082 4.082 18 C -0.078 4.078 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.020 0.980 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -25.780 13.657 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.143 4.143 5 C -0.017 4.017 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.038 0.962 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.224 -25.833 13.257 29.062 hybrid contribution -0.424 0.993 0.024 1.080 sum -1.648 -24.840 13.280 28.215 Atomic orbital electron populations 1.22443 0.88077 1.01364 1.00798 1.62066 1.07644 1.15091 1.41970 1.22303 0.99476 0.86320 0.99058 1.21654 1.00021 0.98140 0.94461 1.19085 0.96242 0.89403 0.96954 1.21301 1.34586 0.97565 1.02051 0.92618 1.25037 0.95289 0.97541 0.96753 1.69976 1.38487 1.11225 1.33951 0.86541 0.78157 0.79446 0.83891 1.19727 1.21083 1.21032 1.22119 1.00135 0.93430 0.91751 1.21610 1.01006 0.94319 0.98379 1.21534 1.01381 0.93324 0.98712 1.20647 1.01036 0.94548 0.95661 1.19992 0.94402 0.97517 0.95855 1.21085 0.99947 0.99319 0.93363 1.21153 0.96027 0.98030 0.98532 1.21141 0.94784 1.00551 0.98239 1.21163 0.99753 0.99023 0.93745 1.21102 0.95450 0.98162 0.98913 0.96187 0.90732 0.91954 0.95464 0.91358 0.92637 0.93449 0.96860 0.96621 0.93128 0.95404 0.91052 0.91049 0.91992 0.92051 0.91739 0.90806 0.90993 0.86145 0.86215 0.86302 0.86167 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.13 60.06 0.55 0.85 16 2 N -0.54 -8.44 4.76 -242.91 -1.16 -9.60 16 3 C 0.06 1.01 4.96 -3.82 -0.02 0.99 16 4 C -0.10 -2.25 5.08 -26.73 -0.14 -2.39 16 5 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 6 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 7 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.05 0.69 4.96 -3.82 -0.02 0.67 16 15 C -0.12 -1.18 5.14 -26.73 -0.14 -1.32 16 16 C -0.11 -0.98 5.20 -26.74 -0.14 -1.12 16 17 C -0.08 -0.64 5.34 -27.88 -0.15 -0.79 16 18 C -0.08 -0.67 5.13 -104.62 -0.54 -1.20 16 19 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 20 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 21 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 22 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 23 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 1.12 6.30 -51.93 -0.33 0.79 16 26 H 0.06 0.74 6.47 -51.93 -0.34 0.41 16 27 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -31.11 370.34 -11.42 -42.53 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -8.46 Total: -4.38 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.10 Total: -24.45 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.42 Total: -36.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.11 -11.42 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195234995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.587 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds