Wall clock time and date at job start Mon Mar 30 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29023 * 124.91557 * 2 1 4 4 C 1.31786 * 117.12661 * 179.97438 * 3 2 1 5 5 C 1.33647 * 114.49682 * 0.02562 * 4 3 2 6 6 S 1.76199 * 126.03686 * 180.02562 * 5 4 3 7 7 O 1.42096 * 106.40321 * 336.45682 * 6 5 4 8 8 O 1.42108 * 106.39883 * 203.53691 * 6 5 4 9 9 N 1.65597 * 107.22117 * 89.99840 * 6 5 4 10 10 C 1.46499 * 119.99926 * 64.72196 * 9 6 5 11 11 C 1.53004 * 109.47094 * 165.27799 * 10 9 6 12 12 C 1.50701 * 109.47038 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00406 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00112 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99790 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00215 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47382 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47098 * 120.00653 * 16 14 12 19 19 H 1.48505 * 109.47180 * 240.00620 * 16 14 12 20 20 S 1.70980 * 124.91408 * 180.31010 * 2 1 3 21 21 H 1.09000 * 109.47042 * 89.97305 * 1 2 3 22 22 H 1.09001 * 109.47400 * 209.97889 * 1 2 3 23 23 H 1.09006 * 109.47051 * 329.97933 * 1 2 3 24 24 H 1.07996 * 122.75371 * 180.02562 * 4 3 2 25 25 H 0.97001 * 120.00224 * 245.00409 * 9 6 5 26 26 H 1.09007 * 109.47241 * 285.27714 * 10 9 6 27 27 H 1.08995 * 109.47308 * 45.27753 * 10 9 6 28 28 H 1.08994 * 109.46776 * 299.99858 * 11 10 9 29 29 H 1.09002 * 109.46826 * 60.00127 * 11 10 9 30 30 H 0.96996 * 120.00150 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9355 -0.4007 0.0004 6 16 5.5981 -0.9839 0.0017 7 8 6.3909 0.0627 -0.5418 8 8 5.5635 -2.2959 -0.5432 9 7 6.0594 -1.1466 1.5838 10 6 5.3953 -2.1299 2.4430 11 6 6.2251 -2.3424 3.7108 12 6 5.5416 -3.3535 4.5949 13 1 4.6089 -3.8002 4.2835 14 6 6.1074 -3.7090 5.8009 15 7 7.2435 -3.1654 6.1799 16 14 5.2606 -4.9628 6.8964 17 1 4.0065 -5.4212 6.2466 18 1 6.1614 -6.1243 7.1075 19 1 4.9409 -4.3400 8.2061 20 16 2.4856 -1.4020 -0.0076 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.2532 1.7001 0.0010 25 1 6.7666 -0.5880 1.9427 26 1 4.4045 -1.7652 2.7141 27 1 5.3008 -3.0748 1.9080 28 1 7.2157 -2.7071 3.4396 29 1 6.3195 -1.3974 4.2458 30 1 7.6414 -3.4153 7.0284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230138404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:53 Heat of formation + Delta-G solvation = -69.104200 kcal Electronic energy + Delta-G solvation = -16816.549170 eV Core-core repulsion = 13864.350446 eV Total energy + Delta-G solvation = -2952.198724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86853 -38.42767 -37.10869 -37.05893 -34.74311 -33.45120 -31.03537 -29.63802 -26.44558 -25.30215 -23.05893 -22.13688 -20.31003 -19.59245 -18.83022 -18.20026 -17.98116 -17.01122 -16.47430 -16.09941 -15.93386 -15.53558 -15.39997 -14.66461 -14.43029 -13.65845 -13.56060 -13.46227 -13.40924 -13.31513 -13.23815 -13.01737 -12.86841 -12.65676 -12.42667 -12.33726 -11.52571 -11.29952 -10.94567 -10.88096 -10.64552 -10.40756 -10.12955 -8.20141 -6.30693 -0.98713 -0.68926 0.05626 0.42619 1.41686 1.43750 1.45250 1.57435 1.97170 2.43887 2.56881 2.99668 3.15335 3.34825 3.87988 4.10127 4.16064 4.49729 4.53117 4.59866 4.77021 4.79942 4.92980 5.08265 5.49867 5.62553 5.80874 5.98752 6.21768 6.34785 6.85075 7.38791 8.92170 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.005217 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.596084 B = 5365.949167 C = 6268.176962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.084 3.916 3 N -0.516 5.516 4 C 0.187 3.813 5 C -0.862 4.862 6 S 2.746 3.254 7 O -0.973 6.973 8 O -0.979 6.979 9 N -1.106 6.106 10 C 0.131 3.869 11 C 0.019 3.981 12 C -0.542 4.542 13 H 0.069 0.931 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.964 3.036 17 H -0.258 1.258 18 H -0.282 1.282 19 H -0.280 1.280 20 S 0.246 5.754 21 H 0.116 0.884 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.204 0.796 25 H 0.424 0.576 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.003 0.997 29 H 0.009 0.991 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 6.065 -12.169 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.190 4.190 3 N -0.233 5.233 4 C 0.027 3.973 5 C -1.068 5.068 6 S 2.832 3.168 7 O -0.964 6.964 8 O -0.969 6.969 9 N -0.869 5.869 10 C 0.006 3.994 11 C -0.019 4.019 12 C -0.581 4.581 13 H 0.087 0.913 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.182 1.182 18 H -0.207 1.207 19 H -0.205 1.205 20 S 0.503 5.497 21 H 0.134 0.866 22 H 0.127 0.873 23 H 0.122 0.878 24 H 0.221 0.779 25 H 0.261 0.739 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.021 0.979 29 H 0.028 0.972 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.791 5.155 -12.863 19.550 hybrid contribution 0.562 0.728 1.247 1.549 sum -13.229 5.883 -11.616 18.562 Atomic orbital electron populations 1.20907 0.81342 1.06441 1.06262 1.28547 1.04286 0.91472 0.94722 1.66540 1.04659 1.32410 1.19674 1.21955 0.91952 0.94683 0.88733 1.37065 1.28608 1.07674 1.33407 1.00207 0.71948 0.72683 0.71995 1.93548 1.67273 1.58353 1.77205 1.93561 1.86901 1.39124 1.77337 1.55352 1.50129 1.50754 1.30635 1.21357 0.95979 0.90109 0.91992 1.19169 0.95004 0.96373 0.91402 1.21587 1.08412 1.24281 1.03777 0.91271 1.25919 0.95556 0.98506 0.99551 1.70091 1.19560 1.44748 1.22692 0.85405 0.78895 0.78429 0.78361 1.18191 1.20750 1.20531 1.83993 0.92218 1.09556 1.63892 0.86567 0.87297 0.87821 0.77899 0.73925 0.91481 0.91260 0.97860 0.97239 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.46 71.24 0.75 -0.18 16 2 C 0.08 1.69 7.39 88.52 0.65 2.34 16 3 N -0.52 -12.58 10.54 -191.44 -2.02 -14.60 16 4 C 0.19 4.70 11.07 83.66 0.93 5.62 16 5 C -0.86 -23.42 6.62 66.78 0.44 -22.98 16 6 S 2.75 85.59 5.89 -56.49 -0.33 85.26 16 7 O -0.97 -32.49 17.84 -128.00 -2.28 -34.78 16 8 O -0.98 -35.70 17.44 -128.00 -2.23 -37.93 16 9 N -1.11 -36.22 6.00 -187.48 -1.12 -37.35 16 10 C 0.13 5.03 6.16 86.38 0.53 5.56 16 11 C 0.02 0.95 5.12 29.85 0.15 1.10 16 12 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 13 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 14 C 0.00 0.16 5.46 84.65 0.46 0.63 16 15 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 16 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 S 0.25 5.69 23.11 -56.49 -1.31 4.38 16 21 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.20 4.24 8.06 -2.91 -0.02 4.22 16 25 H 0.42 12.84 8.65 -96.74 -0.84 12.01 16 26 H 0.07 2.35 8.14 -2.38 -0.02 2.34 16 27 H 0.07 2.67 7.76 -2.39 -0.02 2.65 16 28 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -70.35 295.72 -2.50 -72.85 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.33 Total: 8.59 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 4.15 Total: -36.65 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -2.86 Total: -106.15 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -4.51 Total: -72.70 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 91.28 SS G_CDS: -1.64 Total: 89.64 kcal Total: -70.35 -2.50 -72.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230138404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.749 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds