Wall clock time and date at job start Mon Mar 30 2020 01:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 H 1.08997 * 109.46826 * 306.34405 * 3 2 1 5 5 C 1.50700 * 109.46794 * 186.34488 * 3 2 1 6 6 H 1.08002 * 119.99927 * 239.99658 * 5 3 2 7 7 C 1.37875 * 120.00060 * 59.72621 * 5 3 2 8 8 N 1.31515 * 120.00068 * 0.26552 * 7 5 3 9 9 Si 1.86802 * 120.00269 * 180.27425 * 7 5 3 10 10 H 1.48497 * 109.47180 * 89.99159 * 9 7 5 11 11 H 1.48496 * 109.47328 * 209.99640 * 9 7 5 12 12 H 1.48507 * 109.46763 * 329.99794 * 9 7 5 13 13 N 1.46894 * 109.47214 * 66.34263 * 3 2 1 14 14 C 1.46897 * 111.00242 * 259.91977 * 13 3 2 15 15 C 1.52998 * 109.47505 * 272.07383 * 14 13 3 16 16 H 1.08994 * 109.46867 * 305.97722 * 15 14 13 17 17 C 1.50699 * 109.46960 * 65.98104 * 15 14 13 18 18 C 1.38230 * 120.00436 * 59.72062 * 17 15 14 19 19 C 1.38234 * 120.00066 * 179.80937 * 18 17 15 20 20 C 1.38238 * 120.00123 * 0.39936 * 19 18 17 21 21 C 1.38235 * 119.99799 * 359.86283 * 20 19 18 22 22 C 1.38237 * 119.99497 * 239.99955 * 17 15 14 23 23 C 1.53003 * 109.46907 * 185.97543 * 15 14 13 24 24 C 1.53002 * 109.46825 * 65.41916 * 23 15 14 25 25 C 1.52999 * 109.46901 * 185.41581 * 23 15 14 26 26 H 1.09004 * 109.46906 * 61.93846 * 1 2 3 27 27 H 1.09003 * 109.47155 * 181.93011 * 1 2 3 28 28 H 1.08994 * 109.47730 * 301.93934 * 1 2 3 29 29 H 1.09003 * 109.47406 * 239.99522 * 2 1 3 30 30 H 1.09007 * 109.46696 * 119.99706 * 2 1 3 31 31 H 0.97001 * 120.00098 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00239 * 23.88568 * 13 3 2 33 33 H 1.09004 * 109.46743 * 32.08046 * 14 13 3 34 34 H 1.09000 * 109.46838 * 152.07016 * 14 13 3 35 35 H 1.07997 * 119.99752 * 0.02562 * 18 17 15 36 36 H 1.07998 * 120.00272 * 180.23744 * 19 18 17 37 37 H 1.07996 * 119.99986 * 179.83506 * 20 19 18 38 38 H 1.07999 * 120.00042 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.00101 * 359.97438 * 22 17 15 40 40 H 1.08993 * 109.47391 * 305.42083 * 23 15 14 41 41 H 1.09006 * 109.47350 * 63.96722 * 24 23 15 42 42 H 1.09000 * 109.47195 * 183.95996 * 24 23 15 43 43 H 1.08999 * 109.47709 * 303.96446 * 24 23 15 44 44 H 1.08999 * 109.46823 * 180.02562 * 25 23 15 45 45 H 1.09004 * 109.47126 * 300.00185 * 25 23 15 46 46 H 1.09008 * 109.46913 * 60.00229 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5869 1.9880 -0.8277 5 6 3.5388 1.4454 -0.1570 6 1 4.1611 1.8839 0.6090 7 6 4.1158 0.8831 -1.2759 8 7 3.3579 0.3490 -2.2086 9 14 5.9740 0.8798 -1.4670 10 1 6.5315 -0.3569 -0.8628 11 1 6.3234 0.9270 -2.9095 12 1 6.5443 2.0666 -0.7803 13 7 1.6792 2.0894 1.2685 14 6 0.4896 2.9362 1.1081 15 6 0.9169 4.3384 0.6698 16 1 1.6539 4.7294 1.3712 17 6 1.5216 4.2712 -0.7089 18 6 0.7724 3.7984 -1.7700 19 6 1.3258 3.7405 -3.0354 20 6 2.6311 4.1478 -3.2382 21 6 3.3821 4.6156 -2.1761 22 6 2.8274 4.6772 -0.9114 23 6 -0.3043 5.2598 0.6468 24 6 -0.8377 5.4353 2.0700 25 6 0.0963 6.6234 0.0805 26 1 -0.3633 0.4835 -0.9069 27 1 -0.3634 -1.0271 0.0346 28 1 -0.3634 0.5436 0.8720 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.7638 -0.0463 -2.9960 32 1 1.5405 1.4051 1.9968 33 1 -0.1654 2.5029 0.3522 34 1 -0.0426 2.9986 2.0573 35 1 -0.2465 3.4774 -1.6110 36 1 0.7392 3.3746 -3.8651 37 1 3.0643 4.1001 -4.2263 38 1 4.4021 4.9334 -2.3344 39 1 3.4141 5.0428 -0.0816 40 1 -1.0798 4.8196 0.0199 41 1 -0.0877 5.9396 2.6795 42 1 -1.7482 6.0339 2.0456 43 1 -1.0570 4.4576 2.4991 44 1 -0.7736 7.2800 0.0645 45 1 0.8718 7.0636 0.7074 46 1 0.4763 6.4983 -0.9335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234039697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:49 Heat of formation + Delta-G solvation = 7.863197 kcal Electronic energy + Delta-G solvation = -23262.234263 eV Core-core repulsion = 20343.934563 eV Total energy + Delta-G solvation = -2918.299700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.31389 -36.57391 -35.53628 -32.32879 -31.06771 -30.07687 -30.03436 -27.83482 -26.72183 -25.68300 -23.07034 -22.08882 -21.48784 -20.87985 -19.60132 -18.86937 -16.39869 -16.01934 -15.08492 -14.88648 -14.53910 -14.12782 -13.98298 -13.59354 -13.40906 -13.18163 -12.75699 -12.66781 -12.40442 -12.09189 -11.98311 -11.77036 -11.61809 -11.23344 -11.12556 -11.07350 -10.90292 -10.75573 -10.51866 -10.48410 -10.29275 -9.97299 -9.93650 -9.86218 -9.61038 -9.51061 -8.87603 -8.23193 -7.91908 -7.57409 -7.04915 -5.80457 -3.79369 2.28843 2.35613 3.38499 3.45409 3.49467 4.56684 4.67901 5.00348 5.12898 5.23650 5.50170 5.58425 5.67993 5.69033 5.80288 5.82392 5.89227 5.90893 5.99354 6.07002 6.11070 6.16475 6.18185 6.20489 6.30810 6.35523 6.36981 6.44593 6.46617 6.49194 6.59780 6.75456 6.86416 6.90835 6.94876 7.12137 7.31792 7.37302 7.39149 7.52883 7.60743 7.88489 7.91886 8.06932 8.49616 8.74448 8.80849 9.24764 9.82858 11.25488 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.008143 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.221113 B = 3437.752399 C = 4175.933964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C 0.206 3.794 4 H 0.060 0.940 5 C -0.474 4.474 6 H 0.054 0.946 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.880 3.120 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.064 3.936 15 C -0.036 4.036 16 H 0.077 0.923 17 C -0.039 4.039 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.087 4.087 23 C -0.089 4.089 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.042 0.958 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.254 0.746 32 H 0.320 0.680 33 H 0.033 0.967 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 8.827 2.724 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C 0.099 3.901 4 H 0.077 0.923 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.313 5.313 14 C -0.066 4.066 15 C -0.055 4.055 16 H 0.095 0.905 17 C -0.039 4.039 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.204 4.204 25 C -0.201 4.201 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.951 9.263 2.462 11.840 hybrid contribution 0.510 -1.131 -0.312 1.280 sum -6.440 8.132 2.150 10.594 Atomic orbital electron populations 1.21898 0.99840 0.99017 0.99654 1.22290 0.91308 1.02822 1.02610 1.19560 0.95625 0.88476 0.86421 0.92283 1.21077 0.91337 1.35036 1.03822 0.92733 1.24789 0.96824 0.96063 0.96139 1.69853 1.33879 1.40080 1.09418 0.86789 0.87380 0.78118 0.76842 1.21284 1.21652 1.20109 1.60653 1.33548 1.26559 1.10529 1.22019 0.92520 0.93462 0.98643 1.20254 0.95871 0.95330 0.94052 0.90475 1.19361 0.93876 0.96777 0.93897 1.20624 0.99136 1.00611 0.92830 1.20768 0.95576 0.99908 0.96649 1.20780 0.94509 1.00125 0.98235 1.20844 0.98483 1.00225 0.93362 1.20689 0.94308 0.99568 0.95990 1.21135 0.97441 0.95832 0.96364 1.21888 1.00309 1.01483 0.96684 1.21820 1.00515 0.96208 1.01514 0.93910 0.95028 0.94827 0.88276 0.95225 0.93595 0.86415 0.94874 0.93112 0.87884 0.87676 0.87784 0.87693 0.87439 0.91606 0.92810 0.93345 0.92483 0.93569 0.92981 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.87 37.16 0.33 -2.56 16 2 C -0.15 -3.53 5.11 -26.73 -0.14 -3.66 16 3 C 0.21 4.87 1.41 -68.87 -0.10 4.77 16 4 H 0.06 1.47 4.04 -51.93 -0.21 1.26 16 5 C -0.47 -12.66 8.81 -34.44 -0.30 -12.97 16 6 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 8 N -0.89 -24.87 11.28 55.43 0.63 -24.24 16 9 Si 0.88 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -13.98 5.99 -107.96 -0.65 -14.62 16 14 C 0.06 1.10 4.40 -3.83 -0.02 1.08 16 15 C -0.04 -0.58 1.83 -91.77 -0.17 -0.75 16 16 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 17 C -0.04 -0.71 1.60 -104.63 -0.17 -0.88 16 18 C -0.11 -2.12 6.66 -39.59 -0.26 -2.38 16 19 C -0.11 -2.10 10.05 -39.58 -0.40 -2.50 16 20 C -0.12 -2.27 10.05 -39.58 -0.40 -2.67 16 21 C -0.11 -2.15 10.05 -39.58 -0.40 -2.55 16 22 C -0.09 -1.69 9.64 -39.58 -0.38 -2.07 16 23 C -0.09 -1.18 2.25 -90.62 -0.20 -1.38 16 24 C -0.15 -1.68 9.05 37.16 0.34 -1.34 16 25 C -0.14 -1.80 8.87 37.16 0.33 -1.47 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.60 6.38 -51.93 -0.33 0.27 16 29 H 0.10 2.64 5.91 -51.93 -0.31 2.33 16 30 H 0.03 0.68 8.00 -51.93 -0.42 0.27 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.32 6.29 8.19 -39.29 -0.32 5.97 16 33 H 0.03 0.60 5.17 -51.93 -0.27 0.33 16 34 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 35 H 0.10 1.80 7.14 -52.49 -0.37 1.43 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.11 2.00 7.95 -52.48 -0.42 1.58 16 40 H 0.07 0.89 7.60 -51.93 -0.39 0.49 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.66 6.29 -51.93 -0.33 0.33 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.83 7.03 -51.92 -0.37 0.46 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -27.73 349.03 -9.63 -37.36 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.81 Total: 9.29 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.03 Total: -29.74 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.02 Total: -38.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.73 -9.63 -37.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.226 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds