Wall clock time and date at job start Mon Mar 30 2020 01:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 H 1.08997 * 109.46826 * 306.34405 * 3 2 1 5 5 C 1.50700 * 109.46794 * 186.34488 * 3 2 1 6 6 H 1.08002 * 119.99927 * 239.99658 * 5 3 2 7 7 C 1.37875 * 120.00060 * 59.72621 * 5 3 2 8 8 N 1.31515 * 120.00068 * 0.26552 * 7 5 3 9 9 Si 1.86802 * 120.00269 * 180.27425 * 7 5 3 10 10 H 1.48497 * 109.47180 * 89.99159 * 9 7 5 11 11 H 1.48496 * 109.47328 * 209.99640 * 9 7 5 12 12 H 1.48507 * 109.46763 * 329.99794 * 9 7 5 13 13 N 1.46894 * 109.47214 * 66.34263 * 3 2 1 14 14 C 1.46897 * 111.00242 * 259.91977 * 13 3 2 15 15 C 1.52998 * 109.47505 * 272.07383 * 14 13 3 16 16 H 1.08994 * 109.46867 * 305.97722 * 15 14 13 17 17 C 1.50699 * 109.46960 * 65.98104 * 15 14 13 18 18 C 1.38230 * 120.00436 * 59.72062 * 17 15 14 19 19 C 1.38234 * 120.00066 * 179.80937 * 18 17 15 20 20 C 1.38238 * 120.00123 * 0.39936 * 19 18 17 21 21 C 1.38235 * 119.99799 * 359.86283 * 20 19 18 22 22 C 1.38237 * 119.99497 * 239.99955 * 17 15 14 23 23 C 1.53003 * 109.46907 * 185.97543 * 15 14 13 24 24 C 1.53002 * 109.46825 * 65.41916 * 23 15 14 25 25 C 1.52999 * 109.46901 * 185.41581 * 23 15 14 26 26 H 1.09004 * 109.46906 * 61.93846 * 1 2 3 27 27 H 1.09003 * 109.47155 * 181.93011 * 1 2 3 28 28 H 1.08994 * 109.47730 * 301.93934 * 1 2 3 29 29 H 1.09003 * 109.47406 * 239.99522 * 2 1 3 30 30 H 1.09007 * 109.46696 * 119.99706 * 2 1 3 31 31 H 0.97001 * 120.00098 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00239 * 23.88568 * 13 3 2 33 33 H 1.09004 * 109.46743 * 32.08046 * 14 13 3 34 34 H 1.09000 * 109.46838 * 152.07016 * 14 13 3 35 35 H 1.07997 * 119.99752 * 0.02562 * 18 17 15 36 36 H 1.07998 * 120.00272 * 180.23744 * 19 18 17 37 37 H 1.07996 * 119.99986 * 179.83506 * 20 19 18 38 38 H 1.07999 * 120.00042 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.00101 * 359.97438 * 22 17 15 40 40 H 1.08993 * 109.47391 * 305.42083 * 23 15 14 41 41 H 1.09006 * 109.47350 * 63.96722 * 24 23 15 42 42 H 1.09000 * 109.47195 * 183.95996 * 24 23 15 43 43 H 1.08999 * 109.47709 * 303.96446 * 24 23 15 44 44 H 1.08999 * 109.46823 * 180.02562 * 25 23 15 45 45 H 1.09004 * 109.47126 * 300.00185 * 25 23 15 46 46 H 1.09008 * 109.46913 * 60.00229 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5869 1.9880 -0.8277 5 6 3.5388 1.4454 -0.1570 6 1 4.1611 1.8839 0.6090 7 6 4.1158 0.8831 -1.2759 8 7 3.3579 0.3490 -2.2086 9 14 5.9740 0.8798 -1.4670 10 1 6.5315 -0.3569 -0.8628 11 1 6.3234 0.9270 -2.9095 12 1 6.5443 2.0666 -0.7803 13 7 1.6792 2.0894 1.2685 14 6 0.4896 2.9362 1.1081 15 6 0.9169 4.3384 0.6698 16 1 1.6539 4.7294 1.3712 17 6 1.5216 4.2712 -0.7089 18 6 0.7724 3.7984 -1.7700 19 6 1.3258 3.7405 -3.0354 20 6 2.6311 4.1478 -3.2382 21 6 3.3821 4.6156 -2.1761 22 6 2.8274 4.6772 -0.9114 23 6 -0.3043 5.2598 0.6468 24 6 -0.8377 5.4353 2.0700 25 6 0.0963 6.6234 0.0805 26 1 -0.3633 0.4835 -0.9069 27 1 -0.3634 -1.0271 0.0346 28 1 -0.3634 0.5436 0.8720 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.7638 -0.0463 -2.9960 32 1 1.5405 1.4051 1.9968 33 1 -0.1654 2.5029 0.3522 34 1 -0.0426 2.9986 2.0573 35 1 -0.2465 3.4774 -1.6110 36 1 0.7392 3.3746 -3.8651 37 1 3.0643 4.1001 -4.2263 38 1 4.4021 4.9334 -2.3344 39 1 3.4141 5.0428 -0.0816 40 1 -1.0798 4.8196 0.0199 41 1 -0.0877 5.9396 2.6795 42 1 -1.7482 6.0339 2.0456 43 1 -1.0570 4.4576 2.4991 44 1 -0.7736 7.2800 0.0645 45 1 0.8718 7.0636 0.7074 46 1 0.4763 6.4983 -0.9335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234039697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:48 Heat of formation + Delta-G solvation = -5.485118 kcal Electronic energy + Delta-G solvation = -23262.813090 eV Core-core repulsion = 20343.934563 eV Total energy + Delta-G solvation = -2918.878527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72506 -38.09555 -36.98923 -34.19631 -32.62147 -31.58764 -31.50655 -29.41720 -27.88029 -27.24820 -24.83685 -23.57995 -23.00029 -22.13648 -21.42494 -20.13410 -18.26513 -17.59088 -16.64838 -16.55215 -16.14564 -15.55473 -15.30200 -15.25020 -14.81020 -14.56448 -14.36957 -14.12318 -13.90185 -13.51957 -13.34094 -13.07707 -12.95107 -12.80981 -12.80810 -12.67432 -12.52832 -12.32800 -12.04073 -11.77953 -11.75836 -11.59341 -11.50108 -11.46172 -11.22434 -11.02361 -10.75352 -10.25894 -9.44266 -9.08384 -8.70666 -7.88765 -5.91839 0.81419 0.86674 1.39072 1.42743 1.49841 2.52916 3.20807 3.40132 3.71742 3.92241 4.15471 4.25813 4.31654 4.35719 4.44665 4.51715 4.52307 4.59030 4.65733 4.75581 4.76777 4.83473 4.88687 4.93536 4.97129 5.06954 5.10608 5.17957 5.18903 5.25745 5.35030 5.36264 5.44348 5.47242 5.53728 5.58910 5.62815 5.76559 5.86279 5.90052 5.93579 6.03714 6.08936 6.46043 6.55406 6.93121 7.09579 7.18077 7.73386 9.14217 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.008143 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.221113 B = 3437.752399 C = 4175.933964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 C 0.215 3.785 4 H 0.050 0.950 5 C -0.479 4.479 6 H 0.036 0.964 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 0.921 3.079 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.066 3.934 15 C -0.032 4.032 16 H 0.068 0.932 17 C -0.035 4.035 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.083 4.083 24 C -0.143 4.143 25 C -0.140 4.140 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.251 0.749 32 H 0.325 0.675 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 9.433 3.763 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.189 4.189 3 C 0.107 3.893 4 H 0.068 0.932 5 C -0.518 4.518 6 H 0.054 0.946 7 C -0.171 4.171 8 N -0.549 5.549 9 Si 0.749 3.251 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.320 5.320 14 C -0.064 4.064 15 C -0.052 4.052 16 H 0.086 0.914 17 C -0.035 4.035 18 C -0.140 4.140 19 C -0.140 4.140 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.200 4.200 25 C -0.197 4.197 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.141 0.859 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.395 9.877 3.513 13.430 hybrid contribution 0.966 -1.304 -0.604 1.731 sum -7.429 8.573 2.909 11.711 Atomic orbital electron populations 1.21743 0.96823 1.00356 1.00246 1.22156 0.94028 1.02062 1.00619 1.19306 0.93698 0.88760 0.87554 0.93212 1.21267 0.93116 1.34309 1.03093 0.94609 1.25234 0.99353 0.96239 0.96236 1.69958 1.34653 1.40734 1.09549 0.86136 0.84465 0.77872 0.76583 1.21254 1.21634 1.20117 1.60522 1.35671 1.26610 1.09205 1.22094 0.91321 0.92993 0.99968 1.20271 0.96953 0.95528 0.92415 0.91387 1.19571 0.93418 0.95623 0.94928 1.20804 0.99718 1.00683 0.92821 1.21052 0.95780 0.99765 0.97452 1.21004 0.94908 1.00561 0.98843 1.21073 0.99123 1.00482 0.93675 1.20856 0.95087 1.00471 0.96056 1.21087 0.95892 0.95284 0.97897 1.21855 1.01056 1.01990 0.95069 1.21781 1.01324 0.96270 1.00342 0.94523 0.93474 0.92789 0.91695 0.95735 0.93999 0.85865 0.95363 0.90339 0.86808 0.86383 0.86666 0.86863 0.87487 0.91501 0.92637 0.91549 0.92306 0.91605 0.92910 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.87 71.98 0.64 -4.38 16 2 C -0.15 -6.88 5.11 30.59 0.16 -6.72 16 3 C 0.21 10.04 1.41 44.17 0.06 10.10 16 4 H 0.05 2.46 4.04 -2.39 -0.01 2.45 16 5 C -0.48 -25.71 8.81 25.60 0.23 -25.48 16 6 H 0.04 2.02 7.81 -2.91 -0.02 2.00 16 7 C 0.03 1.49 5.28 84.65 0.45 1.94 16 8 N -0.91 -51.04 11.28 21.45 0.24 -50.80 16 9 Si 0.92 44.78 29.54 68.60 2.03 46.81 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 13 N -0.69 -27.31 5.99 -495.47 -2.97 -30.28 16 14 C 0.07 2.12 4.40 86.30 0.38 2.50 16 15 C -0.03 -1.00 1.83 -11.54 -0.02 -1.02 16 16 H 0.07 2.23 7.88 -2.39 -0.02 2.21 16 17 C -0.04 -1.27 1.60 -19.87 -0.03 -1.30 16 18 C -0.12 -4.47 6.66 22.27 0.15 -4.32 16 19 C -0.12 -4.61 10.05 22.27 0.22 -4.39 16 20 C -0.14 -5.21 10.05 22.27 0.22 -4.98 16 21 C -0.13 -4.91 10.05 22.27 0.22 -4.68 16 22 C -0.11 -4.14 9.64 22.27 0.21 -3.92 16 23 C -0.08 -1.99 2.25 -10.79 -0.02 -2.01 16 24 C -0.14 -2.79 9.05 71.98 0.65 -2.14 16 25 C -0.14 -3.23 8.87 71.98 0.64 -2.60 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.78 6.38 -2.39 -0.02 1.76 16 29 H 0.06 3.47 5.91 -2.39 -0.01 3.46 16 30 H 0.02 1.11 8.00 -2.38 -0.02 1.09 16 31 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.32 12.19 8.19 -89.70 -0.73 11.46 16 33 H 0.03 0.96 5.17 -2.38 -0.01 0.94 16 34 H 0.08 2.11 6.25 -2.39 -0.01 2.10 16 35 H 0.11 3.83 7.14 -2.91 -0.02 3.81 16 36 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.11 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.11 4.04 7.95 -2.91 -0.02 4.02 16 40 H 0.07 1.62 7.60 -2.39 -0.02 1.60 16 41 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.13 6.29 -2.39 -0.02 1.11 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.04 1.11 7.03 -2.38 -0.02 1.10 16 Total: -1.00 -58.65 349.03 3.66 -54.98 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.21 Total: 32.69 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 4.16 Total: -53.40 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.73 Total: -81.08 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -58.65 3.66 -54.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.496 kcal (2) G-P(sol) polarization free energy of solvation -58.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds