Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38505 * 120.38818 * 2 1 4 4 C 1.39281 * 118.37375 * 180.23968 * 3 2 1 5 5 N 1.39785 * 120.47500 * 179.78617 * 4 3 2 6 6 S 1.65597 * 119.99742 * 224.71834 * 5 4 3 7 7 O 1.42100 * 106.40445 * 178.53865 * 6 5 4 8 8 O 1.42098 * 106.40287 * 311.46313 * 6 5 4 9 9 C 1.76205 * 107.21733 * 65.00022 * 6 5 4 10 10 H 1.07998 * 119.99755 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00006 * 179.97438 * 9 6 5 12 12 N 1.31521 * 120.00066 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00115 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.46809 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46819 * 120.00051 * 13 11 9 16 16 H 1.48495 * 109.46971 * 240.00034 * 13 11 9 17 17 C 1.38874 * 119.04688 * 359.50666 * 4 3 2 18 18 N 1.31826 * 120.67212 * 0.23522 * 17 4 3 19 19 C 1.31962 * 121.78158 * 0.02562 * 18 17 4 20 20 Cl 1.73605 * 119.55163 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47037 * 270.27782 * 1 2 3 22 22 H 1.09001 * 109.46827 * 30.27630 * 1 2 3 23 23 H 1.08995 * 109.47257 * 150.27965 * 1 2 3 24 24 H 1.08002 * 120.80676 * 0.02562 * 3 2 1 25 25 H 0.96995 * 120.00102 * 44.44453 * 5 4 3 26 26 H 0.96995 * 120.00092 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.66493 * 180.25401 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1948 0.0000 4 6 3.5996 1.1458 -0.0051 5 7 4.3504 2.3249 -0.0098 6 16 5.6509 2.4742 -1.0241 7 8 6.1727 3.7798 -0.8180 8 8 6.4244 1.2934 -0.8612 9 6 5.0325 2.4403 -2.6737 10 1 3.9722 2.3364 -2.8508 11 6 5.9020 2.5474 -3.7382 12 7 7.1932 2.6744 -3.5225 13 14 5.2465 2.5107 -5.4871 14 1 3.7694 2.3601 -5.4589 15 1 5.6014 3.7778 -6.1754 16 1 5.8475 1.3657 -6.2170 17 6 4.2308 -0.0912 0.0004 18 7 3.5265 -1.2055 0.0058 19 6 2.2069 -1.1937 0.0055 20 17 1.3372 -2.6962 0.0134 21 1 -0.3633 0.0050 1.0276 22 1 -0.3633 0.8875 -0.5181 23 1 -0.3633 -0.8924 -0.5095 24 1 1.6872 2.1412 0.0004 25 1 4.1073 3.0570 0.5781 26 1 7.8049 2.7501 -4.2714 27 1 5.3096 -0.1408 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235788252.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -94.575275 kcal Electronic energy + Delta-G solvation = -17097.628012 eV Core-core repulsion = 14006.447978 eV Total energy + Delta-G solvation = -3091.180033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49452 -37.89059 -37.53120 -36.43293 -36.29574 -35.22195 -34.74729 -30.57162 -28.32639 -28.28389 -24.63234 -23.29635 -21.19518 -19.68412 -18.84041 -18.25345 -18.20575 -17.52047 -17.02125 -15.98996 -15.73612 -15.72400 -14.93708 -14.30930 -14.08027 -14.01424 -13.73256 -13.45362 -13.27983 -13.19091 -13.06344 -12.65509 -12.55583 -12.38454 -12.32385 -12.04855 -11.92453 -11.30250 -11.03269 -10.74015 -10.42529 -9.46724 -8.81247 -7.55379 -0.28754 0.04786 0.21494 0.79190 1.31046 1.32922 1.49681 2.15819 2.47941 2.53008 2.66514 3.40079 3.58279 3.65518 3.80262 3.88594 4.18465 4.38936 4.49134 4.72081 4.84612 5.05264 5.15263 5.18823 5.24831 5.46333 5.82037 6.10023 6.64603 6.72795 8.15211 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.006282 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.752755 B = 4456.036327 C = 4929.569473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.081 4.081 4 C 0.121 3.879 5 N -1.050 6.050 6 S 2.711 3.289 7 O -1.026 7.026 8 O -1.022 7.022 9 C -1.035 5.035 10 H 0.119 0.881 11 C 0.075 3.925 12 N -0.888 5.888 13 Si 0.987 3.013 14 H -0.248 1.248 15 H -0.256 1.256 16 H -0.262 1.262 17 C 0.060 3.940 18 N -0.476 5.476 19 C 0.131 3.869 20 Cl -0.022 7.022 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.187 0.813 25 H 0.433 0.567 26 H 0.301 0.699 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -3.504 4.946 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.021 3.979 5 N -0.800 5.800 6 S 2.814 3.186 7 O -1.016 7.016 8 O -1.012 7.012 9 C -1.169 5.169 10 H 0.137 0.863 11 C -0.139 4.139 12 N -0.519 5.519 13 Si 0.805 3.195 14 H -0.171 1.171 15 H -0.180 1.180 16 H -0.186 1.186 17 C -0.100 4.100 18 N -0.187 5.187 19 C -0.035 4.035 20 Cl 0.006 6.994 21 H 0.118 0.882 22 H 0.115 0.885 23 H 0.098 0.902 24 H 0.204 0.796 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.240 -4.398 5.129 15.762 hybrid contribution -0.413 0.837 -0.852 1.264 sum -14.653 -3.560 4.277 15.674 Atomic orbital electron populations 1.20962 0.85988 1.05110 1.04772 1.20841 0.99950 0.89964 0.98755 1.21877 0.90954 1.00303 0.97906 1.18628 0.92660 0.86387 1.00249 1.53327 1.49208 1.21623 1.55819 1.00428 0.71400 0.71905 0.74895 1.93352 1.78064 1.42301 1.87898 1.93287 1.69119 1.50878 1.87902 1.30768 1.05097 1.66494 1.14541 0.86307 1.25934 0.93772 0.87530 1.06685 1.69963 1.04186 1.40454 1.37299 0.85134 0.80116 0.79510 0.74693 1.17114 1.17958 1.18599 1.23450 1.01570 0.86335 0.98627 1.66963 1.07740 1.31499 1.12476 1.21900 0.89586 0.88480 1.03501 1.98358 1.72694 1.31718 1.96592 0.88236 0.88538 0.90150 0.79623 0.72923 0.88895 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.63 71.24 0.69 -0.97 15 2 C -0.09 -2.23 5.90 -19.77 -0.12 -2.35 15 3 C -0.08 -2.10 9.79 22.58 0.22 -1.88 15 4 C 0.12 4.20 6.24 38.28 0.24 4.44 15 5 N -1.05 -38.56 5.79 -51.10 -0.30 -38.85 15 6 S 2.71 137.91 4.95 -56.49 -0.28 137.63 15 7 O -1.03 -57.81 18.02 -128.00 -2.31 -60.12 15 8 O -1.02 -57.43 14.98 -128.00 -1.92 -59.34 15 9 C -1.04 -54.78 9.68 67.73 0.66 -54.12 15 10 H 0.12 5.70 7.81 -2.91 -0.02 5.68 15 11 C 0.07 4.03 5.46 84.65 0.46 4.49 15 12 N -0.89 -51.27 13.19 21.45 0.28 -50.99 15 13 Si 0.99 40.30 29.54 68.60 2.03 42.32 15 14 H -0.25 -9.46 7.11 99.48 0.71 -8.76 15 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 17 C 0.06 2.41 10.36 84.85 0.88 3.29 15 18 N -0.48 -17.86 10.33 -186.17 -1.92 -19.79 15 19 C 0.13 3.97 7.27 84.71 0.62 4.59 15 20 Cl -0.02 -0.55 27.45 -2.72 -0.07 -0.62 15 21 H 0.10 1.12 8.14 -2.39 -0.02 1.10 15 22 H 0.10 1.07 8.10 -2.39 -0.02 1.05 15 23 H 0.08 1.18 6.91 -2.39 -0.02 1.16 15 24 H 0.19 3.28 8.06 -2.91 -0.02 3.26 15 25 H 0.43 12.46 8.95 -96.75 -0.87 11.60 15 26 H 0.30 15.56 8.31 -92.71 -0.77 14.79 15 27 H 0.17 7.65 5.61 -2.91 -0.02 7.63 15 Total: -1.00 -72.88 271.77 -0.48 -73.36 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.37 Total: 18.91 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 3.64 Total: -42.51 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -1.94 Total: -109.62 kcal Atomic # 8 Polarization: -115.23 SS G_CDS: -4.22 Total: -119.46 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 137.91 SS G_CDS: -0.28 Total: 137.63 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.07 Total: -0.62 kcal Total: -72.88 -0.48 -73.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235788252.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.220 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds