Wall clock time and date at job start Mon Mar 30 2020 01:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47392 * 2 1 4 4 H 1.09008 * 109.47149 * 54.99725 * 3 2 1 5 5 C 1.52998 * 109.47359 * 294.99863 * 3 2 1 6 6 C 1.53002 * 109.47469 * 174.99649 * 3 2 1 7 7 H 1.09002 * 109.47070 * 305.00072 * 6 3 2 8 8 C 1.52997 * 109.46817 * 64.99892 * 6 3 2 9 9 N 1.46899 * 109.47394 * 185.00033 * 6 3 2 10 10 C 1.46894 * 111.00220 * 155.00114 * 9 6 3 11 11 H 1.09002 * 109.47104 * 325.00041 * 10 9 6 12 12 C 1.52997 * 109.47442 * 205.00065 * 10 9 6 13 13 C 1.50698 * 109.47012 * 64.99658 * 12 10 9 14 14 H 1.07999 * 120.00343 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99997 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00133 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47236 * 89.99422 * 17 15 13 19 19 H 1.48505 * 109.46960 * 210.00137 * 17 15 13 20 20 H 1.48504 * 109.47034 * 329.99596 * 17 15 13 21 21 C 1.50704 * 109.47183 * 85.00078 * 10 9 6 22 22 C 1.38237 * 119.99932 * 39.72539 * 21 10 9 23 23 C 1.38239 * 119.99858 * 179.79191 * 22 21 10 24 24 C 1.38234 * 119.99499 * 0.43805 * 23 22 21 25 25 C 1.38228 * 120.00526 * 359.81812 * 24 23 22 26 26 C 1.38235 * 120.00246 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46971 * 59.99914 * 1 2 3 28 28 H 1.08993 * 109.47489 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47082 * 300.00404 * 1 2 3 30 30 H 1.09000 * 109.47673 * 239.99997 * 2 1 3 31 31 H 1.09009 * 109.46905 * 119.99556 * 2 1 3 32 32 H 1.09001 * 109.47027 * 59.99536 * 5 3 2 33 33 H 1.08997 * 109.47805 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46952 * 300.00522 * 5 3 2 35 35 H 1.08998 * 109.47533 * 179.97438 * 8 6 3 36 36 H 1.08996 * 109.47853 * 300.00202 * 8 6 3 37 37 H 1.09002 * 109.47153 * 60.00231 * 8 6 3 38 38 H 1.00904 * 110.99838 * 31.04642 * 9 6 3 39 39 H 1.09001 * 109.47581 * 185.00238 * 12 10 9 40 40 H 1.09008 * 109.46859 * 304.99940 * 12 10 9 41 41 H 0.97002 * 120.00272 * 180.02562 * 16 15 13 42 42 H 1.07999 * 120.00035 * 0.02562 * 22 21 10 43 43 H 1.07992 * 119.99942 * 180.28041 * 23 22 21 44 44 H 1.08008 * 119.99673 * 179.83367 * 24 23 22 45 45 H 1.08003 * 120.00132 * 180.02562 * 25 24 23 46 46 H 1.07994 * 120.00481 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 3.8570 0.8800 1.0114 8 6 4.1798 0.7975 -1.1169 9 7 4.0446 2.8275 0.2462 10 6 5.3393 2.8773 0.9383 11 1 5.3715 2.1030 1.7049 12 6 5.5160 4.2494 1.5917 13 6 4.4797 4.4290 2.6710 14 1 3.7667 3.6430 2.8713 15 6 4.4419 5.5969 3.4029 16 7 3.5379 5.7535 4.3451 17 14 5.6747 6.9569 3.0561 18 1 5.1225 7.8753 2.0281 19 1 5.9404 7.7145 4.3054 20 1 6.9413 6.3619 2.5591 21 6 6.4491 2.6473 -0.0549 22 6 6.3773 3.2120 -1.3146 23 6 7.3973 3.0045 -2.2243 24 6 8.4848 2.2249 -1.8772 25 6 8.5541 1.6559 -0.6194 26 6 7.5362 1.8668 0.2917 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 0.5490 2.1252 -1.3970 33 1 1.9990 3.1540 -1.3076 34 1 2.0699 1.5874 -2.1491 35 1 5.2661 0.7992 -1.0276 36 1 3.8239 -0.2288 -1.2063 37 1 3.8876 1.3618 -2.0025 38 1 3.3629 3.4074 0.7122 39 1 6.5120 4.3181 2.0292 40 1 5.3953 5.0285 0.8389 41 1 3.5110 6.5753 4.8598 42 1 5.5261 3.8184 -1.5868 43 1 7.3434 3.4494 -3.2068 44 1 9.2805 2.0606 -2.5888 45 1 9.4040 1.0471 -0.3482 46 1 7.5904 1.4226 1.2746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246455336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:52 Heat of formation + Delta-G solvation = -1.205017 kcal Electronic energy + Delta-G solvation = -22127.279659 eV Core-core repulsion = 19208.586732 eV Total energy + Delta-G solvation = -2918.692928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.27487 -37.79936 -35.23546 -32.72364 -31.58118 -30.46125 -29.69629 -28.64841 -27.80943 -25.03939 -24.41984 -22.22412 -21.63864 -21.50704 -19.47008 -18.71409 -17.03102 -16.22913 -15.38786 -15.09384 -14.96335 -14.76070 -14.29045 -14.16486 -13.62351 -13.26752 -12.96211 -12.81398 -12.68829 -12.38616 -12.21205 -12.12281 -11.89083 -11.78815 -11.46601 -11.43624 -11.15512 -10.92112 -10.75019 -10.64424 -10.49394 -10.27753 -10.14422 -10.04454 -9.85688 -9.74340 -9.23525 -8.59562 -8.49464 -8.11273 -7.75139 -6.10430 -4.09435 1.79729 1.84943 3.29447 3.37101 3.42247 4.23395 4.41611 4.70284 5.05505 5.06801 5.21359 5.27211 5.27950 5.34582 5.39543 5.50831 5.60823 5.65275 5.72258 5.82061 5.85950 5.91447 5.97752 6.01814 6.10216 6.17113 6.18268 6.22067 6.24350 6.32011 6.34742 6.46563 6.48231 6.54414 6.57834 6.66064 6.81631 6.85266 6.90917 7.14215 7.17739 7.24646 7.44602 7.71005 7.90985 8.23300 8.43246 8.90839 9.52105 11.02199 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.007706 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.061920 B = 3632.750048 C = 5812.598261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.093 4.093 4 H 0.071 0.929 5 C -0.141 4.141 6 C 0.091 3.909 7 H 0.036 0.964 8 C -0.141 4.141 9 N -0.675 5.675 10 C 0.136 3.864 11 H 0.045 0.955 12 C -0.009 4.009 13 C -0.524 4.524 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.900 5.900 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.051 4.051 22 C -0.088 4.088 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.126 4.126 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.361 0.639 39 H 0.021 0.979 40 H 0.023 0.977 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -9.811 -12.082 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.198 4.198 6 C -0.019 4.019 7 H 0.054 0.946 8 C -0.198 4.198 9 N -0.309 5.309 10 C 0.027 3.973 11 H 0.063 0.937 12 C -0.047 4.047 13 C -0.562 4.562 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.052 4.052 22 C -0.106 4.106 23 C -0.149 4.149 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.184 0.816 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.856 -9.656 -12.552 15.945 hybrid contribution 0.414 0.591 0.939 1.184 sum 2.270 -9.066 -11.613 14.906 Atomic orbital electron populations 1.21813 0.96205 1.00984 1.01961 1.21572 0.95554 0.96729 1.01647 1.21320 0.95072 0.95798 0.99042 0.91102 1.21832 0.99809 1.01445 0.96693 1.21511 0.93001 0.90446 0.96946 0.94591 1.21955 1.00887 0.98608 0.98371 1.60494 1.05409 1.08641 1.56383 1.20452 0.86813 0.99500 0.90582 0.93710 1.19737 0.97675 0.91468 0.95779 1.21025 1.15432 1.02874 1.16825 0.91111 1.24965 0.95232 0.98215 0.94572 1.69905 1.34621 1.26918 1.22352 0.86802 0.82639 0.82322 0.77703 1.20181 1.21482 1.18979 1.20210 0.95242 0.94609 0.95107 1.21047 0.97954 0.98753 0.92838 1.21122 0.94730 0.99596 0.99430 1.20969 0.98473 0.99487 0.96663 1.20973 0.98613 1.00769 0.94149 1.21057 0.94505 0.99546 0.99314 0.92570 0.93326 0.92766 0.92026 0.92397 0.93610 0.91643 0.92842 0.92694 0.93738 0.92128 0.81645 0.96043 0.95908 0.92682 0.85382 0.86942 0.87143 0.86969 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.67 37.15 0.36 -1.29 16 2 C -0.12 -1.40 5.03 -26.74 -0.13 -1.54 16 3 C -0.09 -1.30 2.09 -90.62 -0.19 -1.49 16 4 H 0.07 1.11 8.02 -51.92 -0.42 0.69 16 5 C -0.14 -1.82 8.35 37.16 0.31 -1.51 16 6 C 0.09 1.41 2.39 -67.71 -0.16 1.25 16 7 H 0.04 0.61 7.43 -51.93 -0.39 0.22 16 8 C -0.14 -1.98 8.11 37.16 0.30 -1.68 16 9 N -0.67 -11.99 4.86 -100.96 -0.49 -12.48 16 10 C 0.14 2.65 2.19 -68.87 -0.15 2.50 16 11 H 0.04 0.92 7.29 -51.93 -0.38 0.54 16 12 C -0.01 -0.21 3.62 -27.89 -0.10 -0.31 16 13 C -0.52 -14.11 8.67 -34.44 -0.30 -14.40 16 14 H 0.07 2.04 7.73 -52.49 -0.41 1.63 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 17 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 C -0.05 -0.89 2.95 -104.62 -0.31 -1.20 16 22 C -0.09 -1.44 8.59 -39.58 -0.34 -1.78 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 24 C -0.14 -1.87 10.05 -39.59 -0.40 -2.27 16 25 C -0.13 -1.80 10.05 -39.59 -0.40 -2.20 16 26 C -0.13 -2.03 9.66 -39.58 -0.38 -2.41 16 27 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.70 6.81 -51.93 -0.35 0.34 16 31 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 34 H 0.05 0.65 6.35 -51.93 -0.33 0.32 16 35 H 0.05 0.84 5.93 -51.93 -0.31 0.53 16 36 H 0.04 0.56 6.68 -51.93 -0.35 0.21 16 37 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 38 H 0.36 7.18 6.76 -39.29 -0.27 6.91 16 39 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 40 H 0.02 0.54 7.57 -51.92 -0.39 0.14 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.13 2.14 7.71 -52.49 -0.40 1.74 16 43 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 46 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -28.16 351.61 -9.37 -37.53 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.90 Total: 7.60 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -2.39 Total: -28.66 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.28 Total: -38.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.16 -9.37 -37.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246455336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.326 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds