Wall clock time and date at job start Mon Mar 30 2020 01:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 C 1.53004 * 109.47271 * 120.00187 * 2 1 3 5 5 C 1.53002 * 109.47159 * 191.15662 * 4 2 1 6 6 C 1.52997 * 109.46692 * 301.96412 * 5 4 2 7 7 C 1.52997 * 109.47303 * 61.96335 * 5 4 2 8 8 C 1.50697 * 109.47076 * 181.96708 * 5 4 2 9 9 C 1.38240 * 119.99960 * 359.72278 * 8 5 4 10 10 C 1.38231 * 119.99751 * 179.76730 * 9 8 5 11 11 C 1.38236 * 120.00389 * 0.50911 * 10 9 8 12 12 C 1.38239 * 119.99820 * 359.74633 * 11 10 9 13 13 C 1.38234 * 119.99918 * 179.97438 * 8 5 4 14 14 N 1.46901 * 109.47167 * 240.00248 * 2 1 3 15 15 C 1.46905 * 110.99754 * 107.97758 * 14 2 1 16 16 C 1.52999 * 109.46546 * 180.02562 * 15 14 2 17 17 C 1.50704 * 109.46836 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00039 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46993 * 120.00327 * 21 19 17 24 24 H 1.48500 * 109.46918 * 239.99983 * 21 19 17 25 25 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47150 * 59.99655 * 1 2 3 27 27 H 1.09002 * 109.46985 * 299.99782 * 1 2 3 28 28 H 1.09003 * 109.46950 * 311.15508 * 4 2 1 29 29 H 1.08991 * 109.47199 * 71.15242 * 4 2 1 30 30 H 1.08998 * 109.47654 * 65.05797 * 6 5 4 31 31 H 1.09005 * 109.46907 * 185.05243 * 6 5 4 32 32 H 1.08999 * 109.47612 * 305.04728 * 6 5 4 33 33 H 1.09004 * 109.47143 * 60.00283 * 7 5 4 34 34 H 1.08999 * 109.47084 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47336 * 299.99916 * 7 5 4 36 36 H 1.08001 * 119.99954 * 0.02562 * 9 8 5 37 37 H 1.07999 * 119.99931 * 180.23265 * 10 9 8 38 38 H 1.07993 * 120.00498 * 179.72311 * 11 10 9 39 39 H 1.08002 * 120.00368 * 179.97438 * 12 11 10 40 40 H 1.07993 * 119.99931 * 0.02562 * 13 8 5 41 41 H 1.00896 * 110.99780 * 231.93056 * 14 2 1 42 42 H 1.08993 * 109.46918 * 299.99787 * 15 14 2 43 43 H 1.08995 * 109.47203 * 60.00053 * 15 14 2 44 44 H 1.09002 * 109.47380 * 299.99341 * 16 15 14 45 45 H 1.08995 * 109.47532 * 60.00003 * 16 15 14 46 46 H 0.97005 * 120.00196 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5443 -0.4841 1.3966 6 6 4.2643 -0.9817 0.1417 7 6 3.8095 1.0118 1.5774 8 6 4.0555 -1.2339 2.5997 9 6 3.1841 -1.9807 3.3704 10 6 3.6539 -2.6724 4.4711 11 6 4.9933 -2.6089 4.8074 12 6 5.8638 -1.8579 4.0398 13 6 5.3950 -1.1708 2.9356 14 7 2.0196 -0.6924 -1.1995 15 6 2.5942 0.2598 -2.1593 16 6 3.0915 -0.4969 -3.3926 17 6 3.6804 0.4799 -4.3776 18 1 3.6977 1.5350 -4.1471 19 6 4.1970 0.0268 -5.5728 20 7 4.1763 -1.2579 -5.8533 21 14 4.9263 1.2378 -6.7941 22 1 4.8299 2.6138 -6.2443 23 1 6.3522 0.9000 -7.0346 24 1 4.1770 1.1619 -8.0739 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.5235 -0.3352 2.1280 29 1 1.8481 -1.7901 1.1554 30 1 3.9609 -0.3792 -0.7144 31 1 5.3418 -0.8956 0.2828 32 1 4.0036 -2.0248 -0.0373 33 1 3.2965 1.3663 2.4715 34 1 4.8811 1.1807 1.6829 35 1 3.4398 1.5542 0.7072 36 1 2.1370 -2.0270 3.1100 37 1 2.9738 -3.2588 5.0711 38 1 5.3595 -3.1457 5.6700 39 1 6.9101 -1.8079 4.3027 40 1 6.0749 -0.5839 2.3361 41 1 2.6877 -1.4083 -0.9562 42 1 1.8319 0.9793 -2.4579 43 1 3.4281 0.7857 -1.6945 44 1 3.8538 -1.2167 -3.0944 45 1 2.2574 -1.0225 -3.8573 46 1 4.5401 -1.5768 -6.6941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273296062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:39 Heat of formation + Delta-G solvation = 19.740054 kcal Electronic energy + Delta-G solvation = -21745.999759 eV Core-core repulsion = 18828.215078 eV Total energy + Delta-G solvation = -2917.784681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26500 -38.09311 -34.84898 -33.19011 -31.60441 -30.96233 -29.73562 -28.27079 -27.05711 -26.53512 -24.02125 -23.00893 -22.35078 -20.61403 -20.34758 -19.00850 -17.10366 -16.30833 -15.54634 -15.14980 -15.10557 -14.79182 -14.45481 -13.99862 -13.72363 -13.61797 -13.45872 -13.24914 -12.66543 -12.43779 -12.26826 -12.08586 -11.93242 -11.67562 -11.57614 -11.39036 -11.28397 -11.04924 -10.99727 -10.80611 -10.76162 -10.49630 -10.30421 -10.06355 -9.83504 -9.29200 -9.09520 -8.97662 -8.72396 -8.33752 -7.63637 -5.98162 -4.00557 1.31547 1.34043 3.31844 3.39357 3.43178 3.73104 4.45125 4.52265 4.64133 4.79619 4.90988 4.99842 5.03724 5.08741 5.24477 5.33385 5.37915 5.43184 5.49839 5.60279 5.63927 5.76495 5.85804 5.88116 5.92942 5.99806 6.02018 6.06686 6.11344 6.13054 6.21933 6.27870 6.40489 6.42164 6.44906 6.45224 6.53243 6.65694 6.67190 6.95303 7.02733 7.57990 7.77681 7.87785 8.05897 8.14380 8.46187 9.07107 9.63278 11.13191 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003902 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.956568 B = 7174.961597 C = 7855.890448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.056 0.944 4 C -0.122 4.122 5 C -0.027 4.027 6 C -0.173 4.173 7 C -0.140 4.140 8 C -0.060 4.060 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.131 4.131 12 C -0.120 4.120 13 C -0.115 4.115 14 N -0.700 5.700 15 C 0.063 3.937 16 C 0.024 3.976 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.346 0.654 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.013 0.987 45 H 0.025 0.975 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 -0.259 21.150 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 H 0.074 0.926 4 C -0.160 4.160 5 C -0.027 4.027 6 C -0.230 4.230 7 C -0.197 4.197 8 C -0.060 4.060 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.149 4.149 12 C -0.138 4.138 13 C -0.133 4.133 14 N -0.338 5.338 15 C -0.064 4.064 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.170 0.830 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.032 0.968 45 H 0.043 0.957 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.590 -0.405 20.712 20.777 hybrid contribution 1.339 0.718 -0.272 1.543 sum -0.251 0.312 20.440 20.444 Atomic orbital electron populations 1.21784 0.95405 1.01691 1.00532 1.21611 0.95419 0.97047 0.89071 0.92594 1.22127 0.93959 1.01382 0.98485 1.19561 0.95403 0.94941 0.92751 1.22660 1.00371 1.02097 0.97899 1.21952 1.01637 0.94212 1.01922 1.19926 0.93476 0.96803 0.95841 1.21234 1.00091 0.97447 0.95264 1.21133 0.95690 0.99580 0.97435 1.21100 0.93840 0.99972 1.00028 1.21121 0.99517 0.97596 0.95573 1.21037 0.95323 0.99786 0.97196 1.60788 1.44970 1.15454 1.12570 1.22239 0.95935 0.94630 0.93644 1.19082 0.96178 0.95398 0.90659 1.21217 1.38925 0.93693 1.02046 0.92756 1.24996 0.96127 0.95071 0.98141 1.69985 1.46227 1.13011 1.23969 0.86562 0.78810 0.81461 0.81318 1.19782 1.21067 1.21007 0.92623 0.92587 0.93654 0.91411 0.91027 0.88675 0.92611 0.92026 0.92747 0.92553 0.91636 0.85581 0.86366 0.86509 0.86354 0.86135 0.82960 0.92450 0.96221 0.96844 0.95705 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.49 37.15 0.35 -1.45 16 2 C 0.08 1.12 2.48 -67.71 -0.17 0.95 16 3 H 0.06 0.82 5.42 -51.93 -0.28 0.54 16 4 C -0.12 -1.47 2.55 -26.73 -0.07 -1.53 16 5 C -0.03 -0.33 0.63 -155.66 -0.10 -0.42 16 6 C -0.17 -2.50 6.68 37.16 0.25 -2.25 16 7 C -0.14 -1.65 8.00 37.16 0.30 -1.36 16 8 C -0.06 -0.72 4.76 -104.62 -0.50 -1.22 16 9 C -0.12 -1.36 8.98 -39.58 -0.36 -1.71 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 12 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 13 C -0.12 -1.32 8.66 -39.58 -0.34 -1.67 16 14 N -0.70 -12.33 6.03 -106.73 -0.64 -12.97 16 15 C 0.06 1.31 4.29 -3.82 -0.02 1.30 16 16 C 0.02 0.63 5.23 -27.88 -0.15 0.48 16 17 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 18 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.73 7.58 -51.93 -0.39 0.33 16 29 H 0.07 0.88 7.39 -51.93 -0.38 0.50 16 30 H 0.10 1.58 3.00 -51.93 -0.16 1.42 16 31 H 0.05 0.77 7.22 -51.93 -0.38 0.40 16 32 H 0.06 0.90 7.22 -51.93 -0.38 0.53 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 7.39 -51.93 -0.38 0.25 16 35 H 0.06 0.83 6.25 -51.93 -0.32 0.50 16 36 H 0.13 1.26 5.90 -52.49 -0.31 0.95 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.31 7.07 -52.49 -0.37 0.93 16 41 H 0.35 5.98 4.49 -39.29 -0.18 5.80 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -29.97 349.33 -9.70 -39.68 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.64 Total: 4.83 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -2.40 Total: -27.28 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.09 Total: -39.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.97 -9.70 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273296062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.416 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds