Wall clock time and date at job start Mon Mar 30 2020 01:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 C 1.53004 * 109.47271 * 120.00187 * 2 1 3 5 5 C 1.53002 * 109.47159 * 191.15662 * 4 2 1 6 6 C 1.52997 * 109.46692 * 301.96412 * 5 4 2 7 7 C 1.52997 * 109.47303 * 61.96335 * 5 4 2 8 8 C 1.50697 * 109.47076 * 181.96708 * 5 4 2 9 9 C 1.38240 * 119.99960 * 359.72278 * 8 5 4 10 10 C 1.38231 * 119.99751 * 179.76730 * 9 8 5 11 11 C 1.38236 * 120.00389 * 0.50911 * 10 9 8 12 12 C 1.38239 * 119.99820 * 359.74633 * 11 10 9 13 13 C 1.38234 * 119.99918 * 179.97438 * 8 5 4 14 14 N 1.46901 * 109.47167 * 240.00248 * 2 1 3 15 15 C 1.46905 * 110.99754 * 107.97758 * 14 2 1 16 16 C 1.52999 * 109.46546 * 180.02562 * 15 14 2 17 17 C 1.50704 * 109.46836 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00039 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46993 * 120.00327 * 21 19 17 24 24 H 1.48500 * 109.46918 * 239.99983 * 21 19 17 25 25 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47150 * 59.99655 * 1 2 3 27 27 H 1.09002 * 109.46985 * 299.99782 * 1 2 3 28 28 H 1.09003 * 109.46950 * 311.15508 * 4 2 1 29 29 H 1.08991 * 109.47199 * 71.15242 * 4 2 1 30 30 H 1.08998 * 109.47654 * 65.05797 * 6 5 4 31 31 H 1.09005 * 109.46907 * 185.05243 * 6 5 4 32 32 H 1.08999 * 109.47612 * 305.04728 * 6 5 4 33 33 H 1.09004 * 109.47143 * 60.00283 * 7 5 4 34 34 H 1.08999 * 109.47084 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47336 * 299.99916 * 7 5 4 36 36 H 1.08001 * 119.99954 * 0.02562 * 9 8 5 37 37 H 1.07999 * 119.99931 * 180.23265 * 10 9 8 38 38 H 1.07993 * 120.00498 * 179.72311 * 11 10 9 39 39 H 1.08002 * 120.00368 * 179.97438 * 12 11 10 40 40 H 1.07993 * 119.99931 * 0.02562 * 13 8 5 41 41 H 1.00896 * 110.99780 * 231.93056 * 14 2 1 42 42 H 1.08993 * 109.46918 * 299.99787 * 15 14 2 43 43 H 1.08995 * 109.47203 * 60.00053 * 15 14 2 44 44 H 1.09002 * 109.47380 * 299.99341 * 16 15 14 45 45 H 1.08995 * 109.47532 * 60.00003 * 16 15 14 46 46 H 0.97005 * 120.00196 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5443 -0.4841 1.3966 6 6 4.2643 -0.9817 0.1417 7 6 3.8095 1.0118 1.5774 8 6 4.0555 -1.2339 2.5997 9 6 3.1841 -1.9807 3.3704 10 6 3.6539 -2.6724 4.4711 11 6 4.9933 -2.6089 4.8074 12 6 5.8638 -1.8579 4.0398 13 6 5.3950 -1.1708 2.9356 14 7 2.0196 -0.6924 -1.1995 15 6 2.5942 0.2598 -2.1593 16 6 3.0915 -0.4969 -3.3926 17 6 3.6804 0.4799 -4.3776 18 1 3.6977 1.5350 -4.1471 19 6 4.1970 0.0268 -5.5728 20 7 4.1763 -1.2579 -5.8533 21 14 4.9263 1.2378 -6.7941 22 1 4.8299 2.6138 -6.2443 23 1 6.3522 0.9000 -7.0346 24 1 4.1770 1.1619 -8.0739 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.5235 -0.3352 2.1280 29 1 1.8481 -1.7901 1.1554 30 1 3.9609 -0.3792 -0.7144 31 1 5.3418 -0.8956 0.2828 32 1 4.0036 -2.0248 -0.0373 33 1 3.2965 1.3663 2.4715 34 1 4.8811 1.1807 1.6829 35 1 3.4398 1.5542 0.7072 36 1 2.1370 -2.0270 3.1100 37 1 2.9738 -3.2588 5.0711 38 1 5.3595 -3.1457 5.6700 39 1 6.9101 -1.8079 4.3027 40 1 6.0749 -0.5839 2.3361 41 1 2.6877 -1.4083 -0.9562 42 1 1.8319 0.9793 -2.4579 43 1 3.4281 0.7857 -1.6945 44 1 3.8538 -1.2167 -3.0944 45 1 2.2574 -1.0225 -3.8573 46 1 4.5401 -1.5768 -6.6941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273296062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:39 Heat of formation + Delta-G solvation = 4.271685 kcal Electronic energy + Delta-G solvation = -21746.670518 eV Core-core repulsion = 18828.215078 eV Total energy + Delta-G solvation = -2918.455440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22713 -39.14222 -36.24196 -34.98769 -33.15231 -31.84010 -30.60877 -29.99304 -28.17353 -27.58816 -25.94412 -23.94420 -23.19956 -22.43917 -21.48294 -20.02310 -18.48619 -17.95379 -16.75809 -16.56453 -16.15861 -15.99912 -15.93192 -15.06647 -14.90588 -14.68633 -14.63254 -14.27873 -14.21278 -13.64301 -13.59548 -13.34880 -13.10215 -12.96527 -12.88552 -12.65725 -12.63999 -12.56983 -12.27481 -12.19556 -12.02081 -11.85742 -11.58008 -11.39206 -11.29220 -11.10026 -11.02727 -10.55902 -9.76882 -9.55175 -9.07120 -8.19435 -6.30601 0.50907 0.54819 1.39947 1.40352 1.53586 2.40720 2.92658 3.14053 3.45784 3.55545 3.70500 4.04150 4.16561 4.20090 4.20854 4.29255 4.34028 4.45435 4.53053 4.55145 4.60463 4.67754 4.72016 4.76750 4.82605 4.91671 4.98746 5.02028 5.05545 5.08255 5.11070 5.17311 5.20796 5.23602 5.31691 5.36898 5.48176 5.51307 5.66455 5.67145 5.71109 5.79727 5.83001 6.17596 6.19666 6.39918 6.68453 6.87468 7.38657 8.92802 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003902 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.956568 B = 7174.961597 C = 7855.890448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.077 3.923 3 H 0.055 0.945 4 C -0.112 4.112 5 C -0.019 4.019 6 C -0.170 4.170 7 C -0.138 4.138 8 C -0.074 4.074 9 C -0.133 4.133 10 C -0.125 4.125 11 C -0.134 4.134 12 C -0.128 4.128 13 C -0.131 4.131 14 N -0.706 5.706 15 C 0.085 3.915 16 C 0.033 3.967 17 C -0.541 4.541 18 H 0.060 0.940 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.965 3.035 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.279 1.279 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.346 0.654 42 H 0.052 0.948 43 H 0.026 0.974 44 H -0.009 1.009 45 H -0.009 1.009 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 0.487 22.941 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.033 4.033 3 H 0.073 0.927 4 C -0.150 4.150 5 C -0.019 4.019 6 C -0.227 4.227 7 C -0.195 4.195 8 C -0.074 4.074 9 C -0.151 4.151 10 C -0.143 4.143 11 C -0.152 4.152 12 C -0.145 4.145 13 C -0.149 4.149 14 N -0.344 5.344 15 C -0.044 4.044 16 C -0.004 4.004 17 C -0.580 4.580 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.137 0.863 41 H 0.171 0.829 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.009 0.991 45 H 0.009 0.991 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.582 0.347 22.523 22.581 hybrid contribution 1.339 0.417 -0.772 1.601 sum -0.243 0.764 21.750 21.765 Atomic orbital electron populations 1.21763 0.94341 1.01833 1.01144 1.21720 0.96124 0.96922 0.88500 0.92687 1.22051 0.93883 1.01053 0.98002 1.19448 0.95214 0.95288 0.91954 1.22575 1.00686 1.01107 0.98302 1.21923 1.01893 0.93716 1.01937 1.19895 0.93937 0.97653 0.95950 1.21418 1.00514 0.97499 0.95628 1.21454 0.96321 0.99289 0.97213 1.21448 0.93773 0.99518 1.00479 1.21396 1.00672 0.97284 0.95191 1.21163 0.95355 1.00481 0.97941 1.60744 1.44539 1.15169 1.13975 1.21825 0.95873 0.94217 0.92447 1.18914 0.94175 0.94868 0.92490 1.21637 1.39131 0.94306 1.02909 0.92221 1.25955 0.96443 0.96995 1.00285 1.70119 1.47124 1.15145 1.24753 0.85406 0.77969 0.79253 0.78453 1.18541 1.20341 1.20426 0.92711 0.94181 0.90837 0.89151 0.91167 0.91033 0.92649 0.92903 0.91421 0.92445 0.92769 0.84686 0.84165 0.84177 0.84658 0.86329 0.82913 0.92939 0.95652 0.99103 0.99102 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.49 71.98 0.68 -2.65 16 2 C 0.08 2.12 2.48 44.91 0.11 2.23 16 3 H 0.06 1.56 5.42 -2.39 -0.01 1.55 16 4 C -0.11 -2.54 2.55 30.60 0.08 -2.46 16 5 C -0.02 -0.45 0.63 -52.93 -0.03 -0.49 16 6 C -0.17 -4.99 6.68 71.98 0.48 -4.51 16 7 C -0.14 -3.11 8.00 71.98 0.58 -2.54 16 8 C -0.07 -1.68 4.76 -19.87 -0.09 -1.77 16 9 C -0.13 -2.68 8.98 22.27 0.20 -2.48 16 10 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 11 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 12 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 13 C -0.13 -2.89 8.66 22.27 0.19 -2.70 16 14 N -0.71 -25.33 6.03 -491.57 -2.96 -28.30 16 15 C 0.08 3.62 4.29 86.30 0.37 3.99 16 16 C 0.03 1.79 5.23 29.85 0.16 1.94 16 17 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 19 C 0.00 0.06 5.46 84.65 0.46 0.53 16 20 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 21 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.68 7.58 -2.39 -0.02 1.66 16 29 H 0.07 1.63 7.39 -2.39 -0.02 1.62 16 30 H 0.07 2.45 3.00 -2.39 -0.01 2.44 16 31 H 0.05 1.58 7.22 -2.38 -0.02 1.56 16 32 H 0.05 1.61 7.22 -2.39 -0.02 1.59 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 1.26 7.39 -2.39 -0.02 1.25 16 35 H 0.05 1.34 6.25 -2.39 -0.01 1.32 16 36 H 0.14 2.38 5.90 -2.91 -0.02 2.37 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.12 2.54 7.07 -2.91 -0.02 2.52 16 41 H 0.35 12.35 4.49 -89.70 -0.40 11.95 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.03 1.06 6.54 -2.39 -0.02 1.04 16 44 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 46 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -65.21 349.33 3.98 -61.24 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.54 Total: 25.71 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 4.09 Total: -48.19 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.68 Total: -85.52 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.21 3.98 -61.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273296062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.507 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds