Wall clock time and date at job start Mon Mar 30 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47109 * 2 1 4 4 C 1.52993 * 109.47139 * 239.99570 * 2 1 3 5 5 C 1.53008 * 109.47091 * 170.98456 * 4 2 1 6 6 C 1.52995 * 109.47209 * 67.15146 * 5 4 2 7 7 C 1.52997 * 109.46784 * 307.14875 * 5 4 2 8 8 C 1.50696 * 109.46829 * 187.14995 * 5 4 2 9 9 C 1.38232 * 119.99699 * 179.97438 * 8 5 4 10 10 C 1.38239 * 120.00194 * 180.25618 * 9 8 5 11 11 C 1.38239 * 119.99508 * 359.51320 * 10 9 8 12 12 C 1.38231 * 120.00370 * 0.46507 * 11 10 9 13 13 C 1.38231 * 120.00482 * 359.97438 * 8 5 4 14 14 N 1.46900 * 109.46959 * 119.99458 * 2 1 3 15 15 C 1.46900 * 111.00269 * 244.36610 * 14 2 1 16 16 C 1.52996 * 109.47443 * 180.02562 * 15 14 2 17 17 C 1.50702 * 109.47414 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99491 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00488 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99776 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47088 * 90.00772 * 21 19 17 23 23 H 1.48508 * 109.47100 * 210.00231 * 21 19 17 24 24 H 1.48499 * 109.47488 * 330.00562 * 21 19 17 25 25 H 1.09002 * 109.47346 * 300.00601 * 1 2 3 26 26 H 1.08993 * 109.47000 * 60.00639 * 1 2 3 27 27 H 1.09004 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47723 * 50.98073 * 4 2 1 29 29 H 1.09008 * 109.47304 * 290.97686 * 4 2 1 30 30 H 1.08999 * 109.47315 * 167.54690 * 6 5 4 31 31 H 1.09000 * 109.46986 * 287.53977 * 6 5 4 32 32 H 1.08999 * 109.47444 * 47.54231 * 6 5 4 33 33 H 1.08999 * 109.47342 * 300.00157 * 7 5 4 34 34 H 1.09000 * 109.46998 * 59.99901 * 7 5 4 35 35 H 1.09001 * 109.47158 * 179.97438 * 7 5 4 36 36 H 1.08003 * 120.00542 * 359.97438 * 9 8 5 37 37 H 1.07996 * 120.00316 * 179.72908 * 10 9 8 38 38 H 1.08005 * 119.99581 * 180.25963 * 11 10 9 39 39 H 1.07999 * 120.00131 * 179.78505 * 12 11 10 40 40 H 1.07996 * 119.99818 * 359.97438 * 13 8 5 41 41 H 1.00896 * 111.00127 * 120.41049 * 14 2 1 42 42 H 1.09007 * 109.46515 * 300.00148 * 15 14 2 43 43 H 1.08992 * 109.47197 * 59.99605 * 15 14 2 44 44 H 1.09007 * 109.46984 * 299.99368 * 16 15 14 45 45 H 1.09000 * 109.47408 * 59.99284 * 16 15 14 46 46 H 0.96994 * 120.00627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5533 -0.5285 -1.3673 6 6 4.2519 -1.2614 -0.2203 7 6 3.8843 0.9635 -1.2960 8 6 4.0294 -1.0864 -2.6838 9 6 5.3697 -1.0251 -3.0161 10 6 5.8058 -1.5320 -4.2260 11 6 4.9028 -2.1093 -5.0992 12 6 3.5625 -2.1710 -4.7667 13 6 3.1258 -1.6594 -3.5590 14 7 2.0196 -0.6924 1.1995 15 6 2.7545 0.2291 2.0763 16 6 3.2482 -0.5267 3.3115 17 6 4.0015 0.4189 4.2113 18 1 4.1170 1.4552 3.9299 19 6 4.5442 -0.0392 5.3930 20 7 5.2020 0.7858 6.1780 21 14 4.3450 -1.8318 5.8792 22 1 5.4823 -2.6201 5.3403 23 1 4.3229 -1.9435 7.3599 24 1 3.0717 -2.3568 5.3241 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.5512 -0.3091 -2.1318 29 1 1.8142 -1.7850 -1.1722 30 1 5.3219 -1.3140 -0.4210 31 1 4.0832 -0.7220 0.7117 32 1 3.8483 -2.2703 -0.1344 33 1 3.3866 1.4856 -2.1131 34 1 3.5398 1.3670 -0.3438 35 1 4.9624 1.1009 -1.3797 36 1 6.0757 -0.5770 -2.3325 37 1 6.8523 -1.4802 -4.4876 38 1 5.2442 -2.5091 -6.0426 39 1 2.8566 -2.6189 -5.4504 40 1 2.0787 -1.7076 -3.2992 41 1 2.5897 -1.4869 0.9510 42 1 3.6080 0.6405 1.5372 43 1 2.0950 1.0400 2.3855 44 1 2.3949 -0.9383 3.8507 45 1 3.9077 -1.3374 3.0020 46 1 5.5835 0.4637 7.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273296066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:41 Heat of formation + Delta-G solvation = 18.754544 kcal Electronic energy + Delta-G solvation = -21865.472228 eV Core-core repulsion = 18947.644812 eV Total energy + Delta-G solvation = -2917.827416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31493 -38.15352 -34.87181 -33.21381 -31.72977 -31.03564 -29.76896 -28.63828 -27.24291 -26.62632 -23.95879 -23.05346 -22.36371 -20.66298 -20.23581 -19.02718 -17.14717 -16.77189 -15.57091 -15.24943 -15.13875 -14.91780 -14.21132 -14.09204 -13.66737 -13.57452 -13.55424 -13.39078 -12.72483 -12.61576 -12.34691 -12.25112 -12.00501 -11.83403 -11.61445 -11.52576 -11.36375 -11.26610 -11.10182 -10.89448 -10.71533 -10.39798 -10.14165 -10.00226 -9.77380 -9.61916 -9.19776 -9.01231 -8.76140 -8.52297 -7.76435 -6.03103 -4.01259 1.28007 1.30423 3.32938 3.40709 3.46893 3.69500 4.47642 4.48384 4.60188 4.66915 4.87560 4.95198 4.99830 5.03082 5.21005 5.29357 5.31746 5.40008 5.45346 5.54951 5.59944 5.72547 5.81816 5.82950 5.88617 5.96412 5.98160 6.00532 6.05683 6.07640 6.16186 6.20725 6.28968 6.35841 6.39992 6.41050 6.45600 6.57573 6.62160 6.81302 6.91917 7.20731 7.40869 7.68968 7.81816 8.00334 8.54601 9.01157 9.59681 11.10243 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.004230 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.642242 B = 6618.243678 C = 7262.835491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.065 0.935 4 C -0.125 4.125 5 C -0.026 4.026 6 C -0.171 4.171 7 C -0.145 4.145 8 C -0.060 4.060 9 C -0.116 4.116 10 C -0.120 4.120 11 C -0.131 4.131 12 C -0.121 4.121 13 C -0.123 4.123 14 N -0.699 5.699 15 C 0.069 3.931 16 C -0.011 4.011 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.263 1.263 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.342 0.658 42 H 0.028 0.972 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.008 0.992 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -4.684 -22.196 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.083 0.917 4 C -0.163 4.163 5 C -0.026 4.026 6 C -0.228 4.228 7 C -0.202 4.202 8 C -0.060 4.060 9 C -0.133 4.133 10 C -0.138 4.138 11 C -0.149 4.149 12 C -0.139 4.139 13 C -0.141 4.141 14 N -0.335 5.335 15 C -0.059 4.059 16 C -0.049 4.049 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.187 1.187 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.165 0.835 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.026 0.974 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.261 -4.610 -21.681 22.572 hybrid contribution 0.916 -0.844 -0.185 1.259 sum -3.344 -5.454 -21.866 22.783 Atomic orbital electron populations 1.21788 0.95336 1.01607 1.00692 1.21666 0.95398 0.97604 0.88661 0.91699 1.22222 0.94029 1.01308 0.98749 1.19545 0.95371 0.95788 0.91910 1.22565 1.00455 1.00565 0.99200 1.22038 1.01662 0.94007 1.02451 1.19921 0.93380 0.97251 0.95461 1.21055 0.95507 1.00008 0.96779 1.21128 0.99498 0.98744 0.94399 1.21104 0.93631 1.00550 0.99647 1.21134 0.95815 1.00019 0.96911 1.21229 0.99959 0.98885 0.94043 1.60778 1.45108 1.11103 1.16558 1.22086 0.94875 0.95170 0.93758 1.19568 0.96119 0.96027 0.93180 1.21068 1.33518 0.97269 1.03955 0.91131 1.24994 0.94613 0.97544 0.96205 1.69910 1.36608 1.35179 1.12628 0.86783 0.79278 0.85816 0.77483 1.20407 1.21465 1.18739 0.92459 0.93548 0.92773 0.91272 0.91221 0.92412 0.88989 0.92298 0.92722 0.91136 0.92460 0.86049 0.86316 0.86497 0.86379 0.85615 0.83497 0.95369 0.91821 0.95701 0.97399 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.51 37.16 0.35 -1.34 16 2 C 0.08 1.03 2.49 -67.72 -0.17 0.86 16 3 H 0.07 0.91 5.23 -51.93 -0.27 0.64 16 4 C -0.12 -1.43 2.58 -26.73 -0.07 -1.50 16 5 C -0.03 -0.31 0.63 -155.66 -0.10 -0.41 16 6 C -0.17 -2.33 6.88 37.16 0.26 -2.08 16 7 C -0.14 -1.76 7.72 37.16 0.29 -1.47 16 8 C -0.06 -0.69 4.76 -104.63 -0.50 -1.19 16 9 C -0.12 -1.30 8.56 -39.58 -0.34 -1.64 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 12 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 13 C -0.12 -1.31 8.98 -39.58 -0.36 -1.67 16 14 N -0.70 -11.50 6.05 -106.73 -0.65 -12.14 16 15 C 0.07 1.35 4.11 -3.83 -0.02 1.34 16 16 C -0.01 -0.27 4.26 -27.88 -0.12 -0.39 16 17 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 21 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.71 7.02 -51.93 -0.36 0.35 16 29 H 0.07 0.80 7.79 -51.92 -0.40 0.40 16 30 H 0.06 0.76 7.03 -51.93 -0.37 0.40 16 31 H 0.09 1.46 3.21 -51.93 -0.17 1.29 16 32 H 0.06 0.78 7.33 -51.93 -0.38 0.40 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.94 4.68 -51.93 -0.24 0.70 16 35 H 0.06 0.68 7.39 -51.93 -0.38 0.30 16 36 H 0.12 1.31 7.08 -52.48 -0.37 0.94 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.19 5.89 -52.49 -0.31 0.88 16 41 H 0.34 5.43 4.74 -39.29 -0.19 5.25 16 42 H 0.03 0.55 5.25 -51.92 -0.27 0.28 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.62 7.20 -51.92 -0.37 0.24 16 45 H 0.01 0.18 7.52 -51.93 -0.39 -0.21 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -30.34 342.52 -9.22 -39.56 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.45 Total: 4.89 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -2.39 Total: -27.54 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.13 Total: -39.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.34 -9.22 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273296066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.315 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds