Wall clock time and date at job start Mon Mar 30 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47109 * 2 1 4 4 C 1.52993 * 109.47139 * 239.99570 * 2 1 3 5 5 C 1.53008 * 109.47091 * 170.98456 * 4 2 1 6 6 C 1.52995 * 109.47209 * 67.15146 * 5 4 2 7 7 C 1.52997 * 109.46784 * 307.14875 * 5 4 2 8 8 C 1.50696 * 109.46829 * 187.14995 * 5 4 2 9 9 C 1.38232 * 119.99699 * 179.97438 * 8 5 4 10 10 C 1.38239 * 120.00194 * 180.25618 * 9 8 5 11 11 C 1.38239 * 119.99508 * 359.51320 * 10 9 8 12 12 C 1.38231 * 120.00370 * 0.46507 * 11 10 9 13 13 C 1.38231 * 120.00482 * 359.97438 * 8 5 4 14 14 N 1.46900 * 109.46959 * 119.99458 * 2 1 3 15 15 C 1.46900 * 111.00269 * 244.36610 * 14 2 1 16 16 C 1.52996 * 109.47443 * 180.02562 * 15 14 2 17 17 C 1.50702 * 109.47414 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99491 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00488 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99776 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47088 * 90.00772 * 21 19 17 23 23 H 1.48508 * 109.47100 * 210.00231 * 21 19 17 24 24 H 1.48499 * 109.47488 * 330.00562 * 21 19 17 25 25 H 1.09002 * 109.47346 * 300.00601 * 1 2 3 26 26 H 1.08993 * 109.47000 * 60.00639 * 1 2 3 27 27 H 1.09004 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47723 * 50.98073 * 4 2 1 29 29 H 1.09008 * 109.47304 * 290.97686 * 4 2 1 30 30 H 1.08999 * 109.47315 * 167.54690 * 6 5 4 31 31 H 1.09000 * 109.46986 * 287.53977 * 6 5 4 32 32 H 1.08999 * 109.47444 * 47.54231 * 6 5 4 33 33 H 1.08999 * 109.47342 * 300.00157 * 7 5 4 34 34 H 1.09000 * 109.46998 * 59.99901 * 7 5 4 35 35 H 1.09001 * 109.47158 * 179.97438 * 7 5 4 36 36 H 1.08003 * 120.00542 * 359.97438 * 9 8 5 37 37 H 1.07996 * 120.00316 * 179.72908 * 10 9 8 38 38 H 1.08005 * 119.99581 * 180.25963 * 11 10 9 39 39 H 1.07999 * 120.00131 * 179.78505 * 12 11 10 40 40 H 1.07996 * 119.99818 * 359.97438 * 13 8 5 41 41 H 1.00896 * 111.00127 * 120.41049 * 14 2 1 42 42 H 1.09007 * 109.46515 * 300.00148 * 15 14 2 43 43 H 1.08992 * 109.47197 * 59.99605 * 15 14 2 44 44 H 1.09007 * 109.46984 * 299.99368 * 16 15 14 45 45 H 1.09000 * 109.47408 * 59.99284 * 16 15 14 46 46 H 0.96994 * 120.00627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5533 -0.5285 -1.3673 6 6 4.2519 -1.2614 -0.2203 7 6 3.8843 0.9635 -1.2960 8 6 4.0294 -1.0864 -2.6838 9 6 5.3697 -1.0251 -3.0161 10 6 5.8058 -1.5320 -4.2260 11 6 4.9028 -2.1093 -5.0992 12 6 3.5625 -2.1710 -4.7667 13 6 3.1258 -1.6594 -3.5590 14 7 2.0196 -0.6924 1.1995 15 6 2.7545 0.2291 2.0763 16 6 3.2482 -0.5267 3.3115 17 6 4.0015 0.4189 4.2113 18 1 4.1170 1.4552 3.9299 19 6 4.5442 -0.0392 5.3930 20 7 5.2020 0.7858 6.1780 21 14 4.3450 -1.8318 5.8792 22 1 5.4823 -2.6201 5.3403 23 1 4.3229 -1.9435 7.3599 24 1 3.0717 -2.3568 5.3241 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.5512 -0.3091 -2.1318 29 1 1.8142 -1.7850 -1.1722 30 1 5.3219 -1.3140 -0.4210 31 1 4.0832 -0.7220 0.7117 32 1 3.8483 -2.2703 -0.1344 33 1 3.3866 1.4856 -2.1131 34 1 3.5398 1.3670 -0.3438 35 1 4.9624 1.1009 -1.3797 36 1 6.0757 -0.5770 -2.3325 37 1 6.8523 -1.4802 -4.4876 38 1 5.2442 -2.5091 -6.0426 39 1 2.8566 -2.6189 -5.4504 40 1 2.0787 -1.7076 -3.2992 41 1 2.5897 -1.4869 0.9510 42 1 3.6080 0.6405 1.5372 43 1 2.0950 1.0400 2.3855 44 1 2.3949 -0.9383 3.8507 45 1 3.9077 -1.3374 3.0020 46 1 5.5835 0.4637 7.0095 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273296066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:41 Heat of formation + Delta-G solvation = 2.199138 kcal Electronic energy + Delta-G solvation = -21866.190124 eV Core-core repulsion = 18947.644812 eV Total energy + Delta-G solvation = -2918.545312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23550 -39.14655 -36.20672 -34.95882 -33.35434 -31.86913 -30.62335 -30.27307 -28.31106 -27.59736 -25.77245 -23.94251 -23.17992 -22.29509 -21.46417 -20.00982 -18.94438 -17.96305 -16.74573 -16.39341 -16.29930 -15.92956 -15.89498 -15.10738 -15.03477 -14.67744 -14.63434 -14.47199 -14.23192 -13.65995 -13.65263 -13.53264 -13.18245 -12.98591 -12.97482 -12.64920 -12.61081 -12.51397 -12.19194 -12.03661 -11.86150 -11.81270 -11.64562 -11.49277 -11.39257 -11.15963 -11.03567 -10.76281 -9.77242 -9.55570 -9.10594 -8.29328 -6.33224 0.50542 0.54408 1.35587 1.38233 1.51183 2.36695 2.92230 3.06465 3.40875 3.55447 3.70300 4.01753 4.16904 4.19887 4.21718 4.28388 4.34347 4.44957 4.45610 4.53190 4.61114 4.68070 4.70744 4.73492 4.85312 4.90073 4.94622 4.99033 5.02004 5.06391 5.08917 5.16642 5.20457 5.23722 5.27371 5.32602 5.46126 5.48756 5.54824 5.65709 5.66650 5.66996 5.79882 6.17245 6.24632 6.32858 6.65420 6.77159 7.31679 8.87358 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.004230 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.642242 B = 6618.243678 C = 7262.835491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.074 3.926 3 H 0.058 0.942 4 C -0.115 4.115 5 C -0.019 4.019 6 C -0.170 4.170 7 C -0.142 4.142 8 C -0.073 4.073 9 C -0.133 4.133 10 C -0.128 4.128 11 C -0.134 4.134 12 C -0.124 4.124 13 C -0.131 4.131 14 N -0.699 5.699 15 C 0.086 3.914 16 C -0.004 4.004 17 C -0.530 4.530 18 H 0.032 0.968 19 C 0.007 3.993 20 N -0.951 5.951 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.249 1.249 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.346 0.654 42 H 0.027 0.973 43 H 0.049 0.951 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -6.814 -24.506 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.035 4.035 3 H 0.076 0.924 4 C -0.153 4.153 5 C -0.019 4.019 6 C -0.227 4.227 7 C -0.199 4.199 8 C -0.073 4.073 9 C -0.151 4.151 10 C -0.146 4.146 11 C -0.152 4.152 12 C -0.142 4.142 13 C -0.149 4.149 14 N -0.336 5.336 15 C -0.043 4.043 16 C -0.042 4.042 17 C -0.568 4.568 18 H 0.051 0.949 19 C -0.190 4.190 20 N -0.591 5.591 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.172 1.172 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.308 -6.739 -24.016 25.502 hybrid contribution 1.272 -0.095 0.465 1.358 sum -4.036 -6.834 -23.552 24.853 Atomic orbital electron populations 1.21756 0.94164 1.01984 1.01126 1.21763 0.96177 0.97259 0.88328 0.92408 1.22144 0.93546 1.01402 0.98221 1.19438 0.95588 0.95139 0.91782 1.22516 1.00717 1.00628 0.98795 1.22002 1.01536 0.94559 1.01841 1.19874 0.93747 0.98281 0.95360 1.21158 0.95606 1.00809 0.97494 1.21383 1.00627 0.98502 0.94079 1.21445 0.93607 0.99824 1.00335 1.21463 0.96422 0.99442 0.96891 1.21423 1.00409 0.98774 0.94291 1.60728 1.44241 1.10754 1.17833 1.21718 0.94810 0.94773 0.92972 1.19448 0.95334 0.95492 0.93945 1.21396 1.33891 0.96535 1.04988 0.94944 1.25955 0.94208 1.02666 0.96166 1.70058 1.38023 1.37683 1.13375 0.85668 0.80105 0.79664 0.77275 1.19101 1.20996 1.17235 0.94066 0.91133 0.92373 0.89297 0.90664 0.92650 0.91407 0.91861 0.91630 0.92855 0.92816 0.86596 0.84829 0.84226 0.84075 0.84431 0.83026 0.95506 0.93200 0.96245 0.96565 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.51 71.98 0.68 -2.34 16 2 C 0.07 1.90 2.49 44.91 0.11 2.01 16 3 H 0.06 1.59 5.23 -2.39 -0.01 1.58 16 4 C -0.12 -2.39 2.58 30.59 0.08 -2.31 16 5 C -0.02 -0.44 0.63 -52.93 -0.03 -0.48 16 6 C -0.17 -4.55 6.88 71.98 0.49 -4.05 16 7 C -0.14 -3.42 7.72 71.98 0.56 -2.86 16 8 C -0.07 -1.56 4.76 -19.87 -0.09 -1.65 16 9 C -0.13 -2.86 8.56 22.27 0.19 -2.67 16 10 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 11 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 12 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 13 C -0.13 -2.44 8.98 22.27 0.20 -2.24 16 14 N -0.70 -22.45 6.05 -491.59 -2.98 -25.43 16 15 C 0.09 3.43 4.11 86.30 0.35 3.79 16 16 C 0.00 -0.21 4.26 29.85 0.13 -0.08 16 17 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 18 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 19 C 0.01 0.41 5.47 84.65 0.46 0.87 16 20 N -0.95 -60.32 13.96 21.44 0.30 -60.02 16 21 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.54 7.02 -2.39 -0.02 1.52 16 29 H 0.07 1.52 7.79 -2.38 -0.02 1.50 16 30 H 0.05 1.47 7.03 -2.39 -0.02 1.45 16 31 H 0.07 2.16 3.21 -2.39 -0.01 2.15 16 32 H 0.06 1.60 7.33 -2.39 -0.02 1.59 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.45 4.68 -2.39 -0.01 1.44 16 35 H 0.05 1.29 7.39 -2.39 -0.02 1.28 16 36 H 0.12 2.51 7.08 -2.91 -0.02 2.49 16 37 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.14 2.15 5.89 -2.91 -0.02 2.13 16 41 H 0.35 10.61 4.74 -89.70 -0.43 10.19 16 42 H 0.03 1.08 5.25 -2.38 -0.01 1.07 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.02 0.94 7.20 -2.38 -0.02 0.93 16 45 H 0.02 0.74 7.52 -2.39 -0.02 0.73 16 46 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -66.12 342.52 3.73 -62.39 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.47 Total: 24.67 kcal Atomic # 6 Polarization: -52.73 SS G_CDS: 4.05 Total: -48.68 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.68 Total: -85.45 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -66.12 3.73 -62.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273296066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.588 kcal (2) G-P(sol) polarization free energy of solvation -66.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds