Wall clock time and date at job start Mon Mar 30 2020 01:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00173 * 2 1 4 4 H 1.08000 * 120.00356 * 202.36751 * 3 2 1 5 5 C 1.38817 * 120.00038 * 22.36436 * 3 2 1 6 6 N 1.31623 * 119.99734 * 11.35296 * 5 3 2 7 7 Si 1.86800 * 120.00105 * 191.34695 * 5 3 2 8 8 H 1.48503 * 109.47123 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47032 * 120.00373 * 7 5 3 10 10 H 1.48503 * 109.46750 * 240.00696 * 7 5 3 11 11 C 1.46501 * 119.99820 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47131 * 269.99642 * 11 2 1 13 13 C 1.33592 * 126.02163 * 90.00080 * 12 11 2 14 14 N 1.31839 * 114.51165 * 179.73733 * 13 12 11 15 15 C 1.29111 * 117.08554 * 0.02562 * 14 13 12 16 16 Br 1.89095 * 124.91908 * 179.97438 * 15 14 13 17 17 S 1.70980 * 110.16111 * 359.97438 * 15 14 13 18 18 H 1.09001 * 109.47210 * 274.20069 * 1 2 3 19 19 H 1.09007 * 109.47130 * 34.19978 * 1 2 3 20 20 H 1.09001 * 109.47192 * 154.19744 * 1 2 3 21 21 H 0.96991 * 119.99810 * 179.97438 * 6 5 3 22 22 H 1.09004 * 109.46884 * 150.00330 * 11 2 1 23 23 H 1.09000 * 109.47066 * 30.00048 * 11 2 1 24 24 H 1.08005 * 122.74256 * 359.71450 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3559 5 6 1.5339 2.3429 0.4574 6 7 0.3845 2.2689 1.0944 7 14 2.3367 4.0048 0.1691 8 1 3.6137 3.8169 -0.5653 9 1 1.4266 4.8617 -0.6325 10 1 2.6079 4.6567 1.4755 11 6 2.1974 -1.2688 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.6439 -2.4698 2.1627 14 7 2.0897 -2.7151 3.3789 15 6 3.2265 -2.1966 3.7041 16 35 4.0699 -2.4038 5.3838 17 16 3.8589 -1.2954 2.3959 18 1 -0.3634 0.0753 1.0249 19 1 -0.3634 0.8500 -0.5777 20 1 -0.3634 -0.9252 -0.4473 21 1 -0.0455 3.0772 1.4143 22 1 3.1499 -1.1386 -0.5133 23 1 1.6083 -2.0286 -0.5129 24 1 0.7047 -2.8567 1.7956 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290172778.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:23 Heat of formation + Delta-G solvation = 69.590194 kcal Electronic energy + Delta-G solvation = -11968.849727 eV Core-core repulsion = 9670.360757 eV Total energy + Delta-G solvation = -2298.488970 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 275.963 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.04155 -35.87715 -32.30485 -31.29240 -29.42262 -26.34552 -25.71829 -23.75016 -21.32446 -19.32764 -17.61636 -16.92551 -15.23869 -14.83127 -14.28139 -13.62395 -13.42508 -13.33624 -13.17141 -11.80318 -11.69714 -11.08529 -11.02250 -10.79613 -10.67492 -10.46199 -10.30103 -10.17517 -10.09963 -9.23822 -8.80376 -8.69882 -8.24085 -7.07024 -5.99561 -3.39306 1.06270 1.23421 2.09317 2.29507 3.24192 3.29283 3.33629 3.35294 4.30854 5.16793 5.21473 5.40044 5.70801 5.81518 6.23802 6.41809 6.57581 6.62240 7.18775 7.53218 7.60128 8.05010 8.11357 8.94852 9.55173 10.03135 11.03201 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.006202 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.363964 B = 4513.631747 C = 5023.994129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.577 5.577 3 C -0.256 4.256 4 H 0.076 0.924 5 C 0.007 3.993 6 N -0.891 5.891 7 Si 0.910 3.090 8 H -0.274 1.274 9 H -0.286 1.286 10 H -0.286 1.286 11 C 0.206 3.794 12 C -0.176 4.176 13 C 0.002 3.998 14 N -0.437 5.437 15 C -0.027 4.027 16 Br 0.020 6.980 17 S 0.182 5.818 18 H 0.032 0.968 19 H 0.052 0.948 20 H 0.004 0.996 21 H 0.258 0.742 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.565 -8.633 3.838 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.296 5.296 3 C -0.387 4.387 4 H 0.094 0.906 5 C -0.194 4.194 6 N -0.532 5.532 7 Si 0.739 3.261 8 H -0.199 1.199 9 H -0.212 1.212 10 H -0.213 1.213 11 C 0.076 3.924 12 C -0.304 4.304 13 C -0.151 4.151 14 N -0.153 5.153 15 C -0.381 4.381 16 Br 0.100 6.900 17 S 0.431 5.569 18 H 0.050 0.950 19 H 0.071 0.929 20 H 0.023 0.977 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.341 -8.291 4.767 12.056 hybrid contribution -0.874 0.758 -0.251 1.184 sum 6.466 -7.533 4.516 10.907 Atomic orbital electron populations 1.20942 0.81599 0.96349 0.99822 1.44510 1.02514 1.00376 1.82162 1.19408 0.98769 0.84669 1.35823 0.90608 1.25203 0.97499 0.99202 0.97466 1.70086 1.17265 1.27831 1.38065 0.86098 0.78902 0.83372 0.77755 1.19861 1.21226 1.21304 1.19766 0.97221 0.88989 0.86397 1.28151 0.96237 0.99388 1.06625 1.21326 1.02269 1.03293 0.88261 1.66015 1.10352 1.21190 1.17731 1.27632 1.01039 1.09054 1.00334 1.96656 1.75718 1.97299 1.20294 1.83934 1.21948 1.47494 1.03531 0.94963 0.92891 0.97733 0.93187 0.91935 0.91239 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.63 9.01 59.84 0.54 4.17 14 2 N -0.58 -13.51 2.91 -182.50 -0.53 -14.04 14 3 C -0.26 -6.54 9.67 -15.06 -0.15 -6.69 14 4 H 0.08 1.88 7.84 -52.49 -0.41 1.47 14 5 C 0.01 0.19 5.13 -17.43 -0.09 0.10 14 6 N -0.89 -24.76 10.59 55.49 0.59 -24.18 14 7 Si 0.91 20.78 29.57 -169.99 -5.03 15.76 14 8 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 14 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 14 11 C 0.21 3.93 6.24 -5.19 -0.03 3.90 14 12 C -0.18 -3.39 6.18 -35.93 -0.22 -3.61 14 13 C 0.00 0.03 11.25 -19.18 -0.22 -0.18 14 14 N -0.44 -8.68 10.55 -14.12 -0.15 -8.83 14 15 C -0.03 -0.50 7.89 51.62 0.41 -0.10 14 16 Br 0.02 0.30 34.13 -68.01 -2.32 -2.02 14 17 S 0.18 3.33 23.22 -107.50 -2.50 0.83 14 18 H 0.03 0.82 7.42 -51.93 -0.39 0.44 14 19 H 0.05 1.31 7.19 -51.93 -0.37 0.94 14 20 H 0.00 0.08 7.84 -51.93 -0.41 -0.33 14 21 H 0.26 6.96 8.31 -40.82 -0.34 6.62 14 22 H 0.06 1.13 8.03 -51.93 -0.42 0.71 14 23 H 0.07 1.15 7.86 -51.93 -0.41 0.74 14 24 H 0.17 2.90 8.06 -52.48 -0.42 2.48 14 LS Contribution 250.21 15.07 3.77 3.77 Total: -1.00 -28.22 250.21 -7.88 -36.10 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -1.96 Total: -4.99 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 0.24 Total: -2.40 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.09 Total: -47.05 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.50 Total: 0.83 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -2.32 Total: -2.02 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.22 -7.88 -36.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290172778.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.689 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds