Wall clock time and date at job start Mon Mar 30 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 N 1.46898 * 109.47240 * 240.00557 * 2 1 3 5 5 C 1.46894 * 111.00617 * 87.04702 * 4 2 1 6 6 C 1.53001 * 109.46911 * 283.77139 * 5 4 2 7 7 C 1.52998 * 109.47050 * 186.80555 * 6 5 4 8 8 C 1.50704 * 109.47086 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00092 * 0.02562 * 8 7 6 10 10 C 1.37886 * 119.99965 * 180.02562 * 8 7 6 11 11 N 1.31505 * 119.99789 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99835 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47164 * 90.00115 * 12 10 8 14 14 H 1.48502 * 109.46672 * 209.99912 * 12 10 8 15 15 H 1.48499 * 109.47164 * 329.99786 * 12 10 8 16 16 C 1.46898 * 110.99732 * 211.00181 * 4 2 1 17 17 H 1.08995 * 109.47475 * 305.95698 * 16 4 2 18 18 C 1.53002 * 109.47509 * 65.96017 * 16 4 2 19 19 C 1.50699 * 109.47211 * 185.95991 * 16 4 2 20 20 C 1.38236 * 119.99822 * 313.85834 * 19 16 4 21 21 C 1.38240 * 120.00281 * 179.80835 * 20 19 16 22 22 C 1.38237 * 119.99583 * 0.39938 * 21 20 19 23 23 C 1.38242 * 119.99962 * 359.85322 * 22 21 20 24 24 C 1.38225 * 120.00015 * 359.95837 * 23 22 21 25 25 H 1.08996 * 109.47245 * 47.73925 * 1 2 3 26 26 H 1.09000 * 109.47655 * 287.73697 * 1 2 3 27 27 H 1.09000 * 109.47017 * 167.73753 * 1 2 3 28 28 H 1.08996 * 109.47025 * 119.99877 * 2 1 3 29 29 H 1.09003 * 109.47114 * 68.16198 * 3 2 1 30 30 H 1.09005 * 109.47442 * 188.15832 * 3 2 1 31 31 H 1.08995 * 109.47339 * 308.15476 * 3 2 1 32 32 H 1.09000 * 109.47031 * 43.76694 * 5 4 2 33 33 H 1.08995 * 109.47558 * 163.76657 * 5 4 2 34 34 H 1.09006 * 109.46783 * 306.80394 * 6 5 4 35 35 H 1.08998 * 109.47558 * 66.80595 * 6 5 4 36 36 H 1.08994 * 109.47450 * 299.99909 * 7 6 5 37 37 H 1.09005 * 109.47441 * 60.00036 * 7 6 5 38 38 H 0.97007 * 120.00165 * 180.02562 * 11 10 8 39 39 H 1.09000 * 109.47111 * 59.62089 * 18 16 4 40 40 H 1.09000 * 109.47043 * 179.61998 * 18 16 4 41 41 H 1.09001 * 109.46717 * 299.61982 * 18 16 4 42 42 H 1.07997 * 119.99987 * 359.97438 * 20 19 16 43 43 H 1.07995 * 120.00467 * 180.22717 * 21 20 19 44 44 H 1.08000 * 120.00232 * 179.83441 * 22 21 20 45 45 H 1.08004 * 119.99787 * 179.97438 * 23 22 21 46 46 H 1.08007 * 120.00169 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.1286 0.2338 -2.3345 6 6 0.7344 0.5161 -2.8979 7 6 0.8600 1.3420 -4.1797 8 6 -0.5133 1.6195 -4.7350 9 1 -1.3881 1.2448 -4.2245 10 6 -0.6528 2.3520 -5.8949 11 7 -1.8511 2.5946 -6.3791 12 14 0.8604 2.9996 -6.7782 13 1 1.3267 1.9923 -7.7646 14 1 0.5199 4.2617 -7.4828 15 1 1.9374 3.2597 -5.7894 16 6 3.3034 -1.3563 -0.9368 17 1 4.0118 -0.6317 -0.5354 18 6 3.0968 -2.4832 0.0773 19 6 3.8446 -1.9295 -2.2211 20 6 3.0143 -2.6469 -3.0618 21 6 3.5098 -3.1694 -4.2419 22 6 4.8376 -2.9813 -4.5773 23 6 5.6692 -2.2682 -3.7341 24 6 5.1728 -1.7426 -2.5560 25 1 -0.3633 0.6911 -0.7605 26 1 -0.3634 0.3131 0.9788 27 1 -0.3633 -1.0042 -0.2183 28 1 1.8933 -0.5138 0.8900 29 1 1.8006 1.9125 0.9539 30 1 3.1201 1.4461 -0.1458 31 1 1.5625 1.9967 -0.8081 32 1 2.5810 1.1672 -1.9996 33 1 2.7502 -0.2135 -3.1101 34 1 0.2348 -0.4268 -3.1206 35 1 0.1513 1.0716 -2.1634 36 1 1.3596 2.2847 -3.9570 37 1 1.4431 0.7864 -4.9143 38 1 -1.9493 3.1096 -7.1953 39 1 2.3833 -3.2044 -0.3213 40 1 4.0481 -2.9802 0.2671 41 1 2.7117 -2.0677 1.0086 42 1 1.9779 -2.7971 -2.7979 43 1 2.8602 -3.7268 -4.9005 44 1 5.2254 -3.3917 -5.4980 45 1 6.7067 -2.1217 -3.9959 46 1 5.8226 -1.1858 -1.8969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292233744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:09 Heat of formation + Delta-G solvation = 7.115278 kcal Electronic energy + Delta-G solvation = -22194.914368 eV Core-core repulsion = 19276.582235 eV Total energy + Delta-G solvation = -2918.332132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00786 -39.15351 -35.88481 -34.63360 -33.68624 -31.73833 -30.98408 -30.39139 -28.16028 -27.97333 -24.55546 -24.27018 -23.39307 -21.80882 -21.52238 -20.15680 -18.81822 -17.75480 -17.59570 -16.52579 -16.27517 -16.04696 -15.39987 -15.32647 -14.91087 -14.78892 -14.43512 -14.24355 -14.13116 -13.93894 -13.72026 -13.35405 -13.15093 -12.98521 -12.88621 -12.79102 -12.58693 -12.37458 -12.21702 -12.11519 -11.86452 -11.77275 -11.67986 -11.50752 -11.28256 -11.20705 -10.94808 -10.73925 -9.74463 -9.50271 -9.10576 -8.29602 -6.32661 0.49675 0.58194 1.32978 1.34251 1.46702 2.34908 2.84835 3.05532 3.05680 3.72233 3.97456 4.05873 4.19915 4.22163 4.26062 4.33852 4.35942 4.42308 4.48576 4.52454 4.67827 4.70290 4.76317 4.79290 4.86350 4.87218 4.92424 4.98019 5.02162 5.07752 5.12258 5.19360 5.22524 5.24917 5.31523 5.38882 5.44637 5.61104 5.64742 5.67719 5.70462 5.76090 5.77412 6.17604 6.24203 6.34590 6.38003 6.75192 7.31600 8.87434 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.006115 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.084953 B = 4577.447677 C = 5942.698874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.178 4.178 4 N -0.530 5.530 5 C 0.056 3.944 6 C -0.085 4.085 7 C -0.007 4.007 8 C -0.527 4.527 9 H 0.031 0.969 10 C 0.005 3.995 11 N -0.951 5.951 12 Si 0.948 3.052 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.249 1.249 16 C 0.120 3.880 17 H 0.052 0.948 18 C -0.132 4.132 19 C -0.084 4.084 20 C -0.105 4.105 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.127 4.127 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.142 0.858 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.955 -10.098 13.206 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.236 4.236 4 N -0.254 5.254 5 C -0.072 4.072 6 C -0.122 4.122 7 C -0.045 4.045 8 C -0.565 4.565 9 H 0.049 0.951 10 C -0.192 4.192 11 N -0.592 5.592 12 Si 0.771 3.229 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.173 1.173 16 C 0.012 3.988 17 H 0.070 0.930 18 C -0.190 4.190 19 C -0.084 4.084 20 C -0.123 4.123 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.146 4.146 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.160 0.840 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.524 -10.389 12.974 23.437 hybrid contribution 0.298 1.049 -0.788 1.345 sum 16.822 -9.340 12.186 22.775 Atomic orbital electron populations 1.22020 0.94866 1.01934 1.01502 1.21783 0.95778 0.92763 0.92831 1.22402 1.00759 0.97986 1.02470 1.62272 1.27044 1.30917 1.05160 1.22226 0.97036 0.94895 0.93001 1.21420 0.96196 0.98569 0.96050 1.19472 0.94687 0.95486 0.94887 1.21476 0.93162 1.33078 1.08772 0.95107 1.25989 0.99078 0.96081 0.98014 1.70068 1.24472 1.41825 1.22871 0.85695 0.80038 0.78104 0.79055 1.19316 1.20664 1.17293 1.20617 0.89756 0.95704 0.92721 0.93000 1.21819 1.02209 0.97231 0.97692 1.19868 0.93967 0.98221 0.96392 1.21078 0.99723 0.97045 0.94470 1.21411 0.96418 1.00626 0.97127 1.21417 0.93755 0.99405 1.00336 1.21379 1.00753 0.97944 0.94408 1.21263 0.94893 1.00601 0.97797 0.93730 0.91239 0.92660 0.88463 0.90833 0.92621 0.93487 0.93704 0.91941 0.94011 0.92415 0.96776 0.97306 0.92535 0.92618 0.91205 0.91179 0.86649 0.85683 0.84551 0.84020 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.88 71.98 0.64 -3.16 16 2 C 0.08 1.80 2.67 44.91 0.12 1.92 16 3 C -0.18 -4.20 7.78 71.98 0.56 -3.64 16 4 N -0.53 -14.25 3.77 -850.31 -3.20 -17.45 16 5 C 0.06 1.85 4.07 86.30 0.35 2.20 16 6 C -0.08 -3.49 4.46 30.59 0.14 -3.36 16 7 C -0.01 -0.37 4.04 29.85 0.12 -0.24 16 8 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 9 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 10 C 0.00 0.29 5.47 84.66 0.46 0.76 16 11 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 12 Si 0.95 45.95 27.47 68.60 1.88 47.83 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 16 C 0.12 2.70 2.24 44.17 0.10 2.79 16 17 H 0.05 1.09 7.53 -2.39 -0.02 1.07 16 18 C -0.13 -2.44 9.09 71.98 0.65 -1.78 16 19 C -0.08 -2.08 3.22 -19.87 -0.06 -2.14 16 20 C -0.10 -2.88 8.19 22.27 0.18 -2.69 16 21 C -0.14 -3.53 10.05 22.27 0.22 -3.31 16 22 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 24 C -0.13 -2.78 9.67 22.27 0.22 -2.57 16 25 H 0.04 1.41 5.03 -2.39 -0.01 1.40 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.87 5.81 -2.39 -0.01 1.86 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.24 7.31 -2.38 -0.02 1.22 16 31 H 0.05 1.36 5.90 -2.39 -0.01 1.34 16 32 H 0.04 1.45 5.17 -2.39 -0.01 1.44 16 33 H 0.06 2.18 5.56 -2.39 -0.01 2.17 16 34 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.06 2.40 4.51 -2.39 -0.01 2.39 16 36 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 37 H 0.01 0.43 7.57 -2.38 -0.02 0.41 16 38 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 39 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.12 6.27 -2.39 -0.01 1.10 16 42 H 0.12 3.42 7.91 -2.91 -0.02 3.40 16 43 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.13 2.36 8.00 -2.91 -0.02 2.33 16 Total: -1.00 -67.78 348.56 4.25 -63.53 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.88 Total: 18.85 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 4.40 Total: -51.77 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.90 Total: -78.44 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -67.78 4.25 -63.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292233744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.647 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds