Wall clock time and date at job start Mon Mar 30 2020 01:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46998 * 2 1 4 4 N 1.46894 * 109.47220 * 120.00193 * 2 1 3 5 5 C 1.46899 * 110.99820 * 163.79866 * 4 2 1 6 6 C 1.52997 * 109.47299 * 293.95484 * 5 4 2 7 7 C 1.52998 * 109.47119 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47298 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99902 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00512 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00268 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99751 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47481 * 89.99621 * 12 10 8 14 14 H 1.48496 * 109.46930 * 210.00176 * 12 10 8 15 15 H 1.48502 * 109.46797 * 329.99650 * 12 10 8 16 16 C 1.46894 * 111.00161 * 287.75354 * 4 2 1 17 17 H 1.09005 * 109.47382 * 312.25553 * 16 4 2 18 18 C 1.53008 * 109.47302 * 192.25850 * 16 4 2 19 19 C 1.50699 * 109.47305 * 72.26020 * 16 4 2 20 20 C 1.38237 * 119.99932 * 227.77297 * 19 16 4 21 21 C 1.38234 * 119.99952 * 179.97438 * 20 19 16 22 22 C 1.38237 * 119.99892 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00088 * 0.06666 * 22 21 20 24 24 C 1.38228 * 119.99637 * 359.88625 * 23 22 21 25 25 H 1.09000 * 109.46765 * 310.66630 * 1 2 3 26 26 H 1.09002 * 109.47039 * 70.66132 * 1 2 3 27 27 H 1.09002 * 109.47107 * 190.66900 * 1 2 3 28 28 H 1.08997 * 109.46818 * 240.00544 * 2 1 3 29 29 H 1.08992 * 109.46681 * 173.04379 * 3 2 1 30 30 H 1.08995 * 109.47452 * 293.04702 * 3 2 1 31 31 H 1.09008 * 109.46748 * 53.04429 * 3 2 1 32 32 H 1.09005 * 109.47276 * 53.95996 * 5 4 2 33 33 H 1.09000 * 109.47190 * 173.95373 * 5 4 2 34 34 H 1.09000 * 109.47473 * 299.99971 * 6 5 4 35 35 H 1.09000 * 109.47090 * 59.99828 * 6 5 4 36 36 H 1.09000 * 109.47631 * 299.99748 * 7 6 5 37 37 H 1.09000 * 109.47337 * 59.99909 * 7 6 5 38 38 H 0.96999 * 119.99958 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47115 * 179.97438 * 18 16 4 40 40 H 1.08996 * 109.46661 * 299.99922 * 18 16 4 41 41 H 1.08994 * 109.46741 * 59.99974 * 18 16 4 42 42 H 1.07999 * 120.00202 * 359.97438 * 20 19 16 43 43 H 1.08003 * 119.99857 * 179.72036 * 21 20 19 44 44 H 1.08004 * 119.99969 * 179.97438 * 22 21 20 45 45 H 1.07993 * 119.99656 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.99819 * 180.10971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4368 -1.0525 1.0576 6 6 3.5898 -2.0944 -0.0523 7 6 5.0657 -2.4698 -0.1994 8 6 5.2165 -3.4956 -1.2930 9 1 4.3466 -3.8452 -1.8292 10 6 6.4650 -3.9879 -1.6092 11 7 6.5965 -4.8835 -2.5633 12 14 7.9696 -3.3839 -0.6814 13 1 8.2014 -4.2493 0.5028 14 1 9.1556 -3.4372 -1.5734 15 1 7.7477 -1.9847 -0.2360 16 6 1.8010 0.1207 2.4030 17 1 2.1436 1.1393 2.2206 18 6 2.5840 -0.4789 3.5728 19 6 0.3318 0.1372 2.7379 20 6 -0.2990 1.3341 3.0216 21 6 -1.6468 1.3493 3.3283 22 6 -2.3640 0.1677 3.3508 23 6 -1.7330 -1.0292 3.0679 24 6 -0.3854 -1.0443 2.7603 25 1 -0.3633 0.6697 0.7795 26 1 -0.3633 0.3403 -0.9697 27 1 -0.3633 -1.0099 0.1903 28 1 1.8933 -0.5137 -0.8900 29 1 3.1228 1.4450 0.1245 30 1 1.7819 1.9193 -0.9456 31 1 1.5786 1.9911 0.8213 32 1 4.0140 -0.1634 0.8035 33 1 3.8023 -1.4664 1.9974 34 1 3.0128 -2.9835 0.2019 35 1 3.2243 -1.6805 -0.9920 36 1 5.6432 -1.5810 -0.4535 37 1 5.4308 -2.8839 0.7405 38 1 7.4749 -5.2295 -2.7859 39 1 2.4220 0.1248 4.4658 40 1 2.2413 -1.4974 3.7553 41 1 3.6466 -0.4908 3.3306 42 1 0.2611 2.2573 3.0037 43 1 -2.1387 2.2839 3.5544 44 1 -3.4169 0.1796 3.5908 45 1 -2.2934 -1.9522 3.0851 46 1 0.1072 -1.9792 2.5375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292235482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:12 Heat of formation + Delta-G solvation = 23.064160 kcal Electronic energy + Delta-G solvation = -21974.534763 eV Core-core repulsion = 19056.894226 eV Total energy + Delta-G solvation = -2917.640537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23465 -38.03274 -34.12257 -33.28282 -32.15561 -30.93289 -30.43796 -28.46995 -27.04718 -26.47971 -23.81912 -22.60532 -22.16944 -21.39121 -20.02064 -18.68028 -16.83025 -16.63374 -16.04235 -15.63857 -15.28421 -14.77950 -14.19520 -14.09983 -13.81533 -13.58774 -13.33662 -13.04802 -13.01639 -12.59848 -12.36705 -12.30339 -11.98671 -11.88221 -11.57529 -11.41358 -11.37007 -11.11645 -11.00054 -10.86780 -10.77305 -10.48472 -10.45187 -9.82209 -9.57979 -9.55030 -9.13657 -8.89477 -8.55682 -8.50512 -8.02433 -6.01081 -3.98480 1.33484 1.41358 3.32181 3.39386 3.42937 3.74014 4.09000 4.47692 4.69480 4.84827 4.96034 5.04566 5.11517 5.16183 5.28405 5.32921 5.35609 5.38350 5.47846 5.57965 5.58786 5.71285 5.73632 5.75940 5.85802 5.96325 5.97857 6.02806 6.04342 6.07601 6.19463 6.29157 6.33971 6.42968 6.46876 6.52756 6.60433 6.65192 6.70489 6.97096 6.99822 7.32862 7.37694 7.44754 7.52116 7.84144 8.58700 9.04910 9.61774 11.12592 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.003809 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.605291 B = 7349.066440 C = 7417.698502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.183 4.183 4 N -0.522 5.522 5 C 0.044 3.956 6 C -0.096 4.096 7 C -0.013 4.013 8 C -0.517 4.517 9 H 0.071 0.929 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.880 3.120 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.266 1.266 16 C 0.109 3.891 17 H 0.055 0.945 18 C -0.150 4.150 19 C -0.055 4.055 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.088 4.088 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.262 0.738 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 13.817 12.735 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.242 4.242 4 N -0.246 5.246 5 C -0.083 4.083 6 C -0.134 4.134 7 C -0.051 4.051 8 C -0.555 4.555 9 H 0.089 0.911 10 C -0.136 4.136 11 N -0.545 5.545 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.191 1.191 16 C 0.001 3.999 17 H 0.073 0.927 18 C -0.207 4.207 19 C -0.056 4.056 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.106 4.106 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.365 13.267 12.694 23.942 hybrid contribution 1.316 1.011 0.222 1.675 sum -14.049 14.279 12.916 23.834 Atomic orbital electron populations 1.22136 0.94689 1.02559 1.01058 1.21754 0.95580 0.92219 0.94065 1.22443 1.01391 0.98529 1.01843 1.62328 1.19230 1.41846 1.01189 1.22492 0.86455 0.98330 1.01052 1.21476 0.99010 0.97047 0.95847 1.19546 0.92160 0.96529 0.96826 1.21154 0.94706 1.22094 1.17530 0.91064 1.25042 0.98973 0.94676 0.94912 1.69920 1.23727 1.30035 1.30774 0.86774 0.82641 0.79911 0.79912 1.20321 1.21484 1.19106 1.20645 0.91397 0.96571 0.91311 0.92681 1.22032 1.00217 1.01775 0.96702 1.19739 0.95142 0.93072 0.97627 1.20978 0.94807 0.97332 1.01227 1.21013 0.94292 0.97960 1.01004 1.21077 0.99578 0.92845 1.01185 1.21177 0.95099 0.97835 1.00119 1.21061 0.93556 0.98641 0.97353 0.91977 0.93392 0.91822 0.89141 0.92513 0.92334 0.92603 0.95272 0.90356 0.92089 0.92917 0.96972 0.97158 0.92817 0.92513 0.91465 0.91524 0.86748 0.86619 0.86677 0.86400 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 7.80 37.16 0.29 -1.53 16 2 C 0.07 0.97 2.78 -67.71 -0.19 0.79 16 3 C -0.18 -2.23 8.14 37.16 0.30 -1.92 16 4 N -0.52 -7.24 3.92 -220.10 -0.86 -8.11 16 5 C 0.04 0.70 4.32 -3.83 -0.02 0.68 16 6 C -0.10 -1.90 5.12 -26.73 -0.14 -2.04 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 8 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 9 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 10 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 11 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 12 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 16 C 0.11 1.30 1.97 -68.86 -0.14 1.17 16 17 H 0.06 0.65 5.38 -51.93 -0.28 0.37 16 18 C -0.15 -1.71 8.29 37.16 0.31 -1.40 16 19 C -0.06 -0.63 2.51 -104.63 -0.26 -0.89 16 20 C -0.12 -1.29 8.51 -39.58 -0.34 -1.62 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 22 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 24 C -0.09 -1.01 7.37 -39.59 -0.29 -1.31 16 25 H 0.06 0.75 4.73 -51.93 -0.25 0.50 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.84 7.27 -51.93 -0.38 0.46 16 28 H 0.09 1.39 5.93 -51.93 -0.31 1.08 16 29 H 0.06 0.73 6.68 -51.93 -0.35 0.39 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 6.45 -51.92 -0.33 0.29 16 32 H 0.03 0.47 6.65 -51.93 -0.35 0.12 16 33 H 0.08 1.22 5.55 -51.93 -0.29 0.93 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.06 6.28 -51.93 -0.33 0.73 16 36 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 37 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 41 H 0.07 0.78 6.14 -51.93 -0.32 0.46 16 42 H 0.11 1.04 7.98 -52.49 -0.42 0.62 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 46 H 0.13 1.60 7.95 -52.49 -0.42 1.19 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -30.32 345.05 -9.50 -39.82 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.74 Total: 0.13 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -2.20 Total: -26.81 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.09 Total: -35.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.32 -9.50 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292235482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.880 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds