Wall clock time and date at job start Mon Mar 30 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46998 * 2 1 4 4 N 1.46894 * 109.47220 * 120.00193 * 2 1 3 5 5 C 1.46899 * 110.99820 * 163.79866 * 4 2 1 6 6 C 1.52997 * 109.47299 * 293.95484 * 5 4 2 7 7 C 1.52998 * 109.47119 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47298 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99902 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00512 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00268 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99751 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47481 * 89.99621 * 12 10 8 14 14 H 1.48496 * 109.46930 * 210.00176 * 12 10 8 15 15 H 1.48502 * 109.46797 * 329.99650 * 12 10 8 16 16 C 1.46894 * 111.00161 * 287.75354 * 4 2 1 17 17 H 1.09005 * 109.47382 * 312.25553 * 16 4 2 18 18 C 1.53008 * 109.47302 * 192.25850 * 16 4 2 19 19 C 1.50699 * 109.47305 * 72.26020 * 16 4 2 20 20 C 1.38237 * 119.99932 * 227.77297 * 19 16 4 21 21 C 1.38234 * 119.99952 * 179.97438 * 20 19 16 22 22 C 1.38237 * 119.99892 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00088 * 0.06666 * 22 21 20 24 24 C 1.38228 * 119.99637 * 359.88625 * 23 22 21 25 25 H 1.09000 * 109.46765 * 310.66630 * 1 2 3 26 26 H 1.09002 * 109.47039 * 70.66132 * 1 2 3 27 27 H 1.09002 * 109.47107 * 190.66900 * 1 2 3 28 28 H 1.08997 * 109.46818 * 240.00544 * 2 1 3 29 29 H 1.08992 * 109.46681 * 173.04379 * 3 2 1 30 30 H 1.08995 * 109.47452 * 293.04702 * 3 2 1 31 31 H 1.09008 * 109.46748 * 53.04429 * 3 2 1 32 32 H 1.09005 * 109.47276 * 53.95996 * 5 4 2 33 33 H 1.09000 * 109.47190 * 173.95373 * 5 4 2 34 34 H 1.09000 * 109.47473 * 299.99971 * 6 5 4 35 35 H 1.09000 * 109.47090 * 59.99828 * 6 5 4 36 36 H 1.09000 * 109.47631 * 299.99748 * 7 6 5 37 37 H 1.09000 * 109.47337 * 59.99909 * 7 6 5 38 38 H 0.96999 * 119.99958 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47115 * 179.97438 * 18 16 4 40 40 H 1.08996 * 109.46661 * 299.99922 * 18 16 4 41 41 H 1.08994 * 109.46741 * 59.99974 * 18 16 4 42 42 H 1.07999 * 120.00202 * 359.97438 * 20 19 16 43 43 H 1.08003 * 119.99857 * 179.72036 * 21 20 19 44 44 H 1.08004 * 119.99969 * 179.97438 * 22 21 20 45 45 H 1.07993 * 119.99656 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.99819 * 180.10971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4368 -1.0525 1.0576 6 6 3.5898 -2.0944 -0.0523 7 6 5.0657 -2.4698 -0.1994 8 6 5.2165 -3.4956 -1.2930 9 1 4.3466 -3.8452 -1.8292 10 6 6.4650 -3.9879 -1.6092 11 7 6.5965 -4.8835 -2.5633 12 14 7.9696 -3.3839 -0.6814 13 1 8.2014 -4.2493 0.5028 14 1 9.1556 -3.4372 -1.5734 15 1 7.7477 -1.9847 -0.2360 16 6 1.8010 0.1207 2.4030 17 1 2.1436 1.1393 2.2206 18 6 2.5840 -0.4789 3.5728 19 6 0.3318 0.1372 2.7379 20 6 -0.2990 1.3341 3.0216 21 6 -1.6468 1.3493 3.3283 22 6 -2.3640 0.1677 3.3508 23 6 -1.7330 -1.0292 3.0679 24 6 -0.3854 -1.0443 2.7603 25 1 -0.3633 0.6697 0.7795 26 1 -0.3633 0.3403 -0.9697 27 1 -0.3633 -1.0099 0.1903 28 1 1.8933 -0.5137 -0.8900 29 1 3.1228 1.4450 0.1245 30 1 1.7819 1.9193 -0.9456 31 1 1.5786 1.9911 0.8213 32 1 4.0140 -0.1634 0.8035 33 1 3.8023 -1.4664 1.9974 34 1 3.0128 -2.9835 0.2019 35 1 3.2243 -1.6805 -0.9920 36 1 5.6432 -1.5810 -0.4535 37 1 5.4308 -2.8839 0.7405 38 1 7.4749 -5.2295 -2.7859 39 1 2.4220 0.1248 4.4658 40 1 2.2413 -1.4974 3.7553 41 1 3.6466 -0.4908 3.3306 42 1 0.2611 2.2573 3.0037 43 1 -2.1387 2.2839 3.5544 44 1 -3.4169 0.1796 3.5908 45 1 -2.2934 -1.9522 3.0851 46 1 0.1072 -1.9792 2.5375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292235482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:11 Heat of formation + Delta-G solvation = 6.994424 kcal Electronic energy + Delta-G solvation = -21975.231599 eV Core-core repulsion = 19056.894226 eV Total energy + Delta-G solvation = -2918.337373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16590 -38.99053 -35.92914 -34.23799 -34.03052 -31.82836 -31.61698 -29.58354 -28.10383 -27.96822 -25.09674 -23.65363 -23.19334 -22.64848 -21.47340 -19.81960 -18.80773 -17.59969 -17.06013 -16.87413 -16.21350 -16.09576 -15.90285 -15.21788 -14.82407 -14.79466 -14.59693 -14.25506 -14.06995 -13.89553 -13.59804 -13.43714 -13.21080 -13.16092 -12.84051 -12.69844 -12.49543 -12.32565 -12.22670 -12.01146 -11.86541 -11.72307 -11.67128 -11.63395 -11.32510 -11.23396 -11.05907 -10.74772 -9.66976 -9.37310 -9.11373 -8.28815 -6.32958 0.55694 0.63812 1.35910 1.37984 1.50125 2.36818 2.85425 3.06467 3.11345 3.81740 3.92732 4.06740 4.19996 4.24130 4.27028 4.30318 4.37107 4.42741 4.43819 4.51071 4.68914 4.70415 4.73948 4.76243 4.81070 4.84310 4.94252 4.95887 4.99986 5.06506 5.08483 5.20193 5.22287 5.28398 5.31523 5.35017 5.45153 5.55137 5.63236 5.68091 5.69312 5.75639 5.84266 6.20366 6.25512 6.33005 6.35621 6.75442 7.31505 8.88396 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.003809 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.605291 B = 7349.066440 C = 7417.698502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.069 3.931 3 C -0.177 4.177 4 N -0.528 5.528 5 C 0.057 3.943 6 C -0.086 4.086 7 C -0.008 4.008 8 C -0.532 4.532 9 H 0.027 0.973 10 C 0.001 3.999 11 N -0.954 5.954 12 Si 0.954 3.046 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.245 1.245 16 C 0.111 3.889 17 H 0.063 0.937 18 C -0.148 4.148 19 C -0.064 4.064 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.102 4.102 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 16.366 14.916 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 C -0.235 4.235 4 N -0.252 5.252 5 C -0.071 4.071 6 C -0.124 4.124 7 C -0.046 4.046 8 C -0.570 4.570 9 H 0.045 0.955 10 C -0.195 4.195 11 N -0.595 5.595 12 Si 0.777 3.223 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.168 1.168 16 C 0.003 3.997 17 H 0.080 0.920 18 C -0.205 4.205 19 C -0.064 4.064 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.121 4.121 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.146 0.854 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.632 15.828 14.884 26.766 hybrid contribution 1.252 0.163 -0.511 1.362 sum -14.380 15.991 14.373 25.866 Atomic orbital electron populations 1.22043 0.93743 1.01991 1.01697 1.21740 0.96291 0.92921 0.92944 1.22372 1.00838 0.97469 1.02860 1.62250 1.17613 1.43116 1.02235 1.22231 0.88125 0.97160 0.99562 1.21283 0.96202 0.97715 0.97171 1.19477 0.94835 0.95106 0.95181 1.21510 0.93536 1.23323 1.18613 0.95486 1.26077 1.02848 0.94716 0.95897 1.70083 1.24880 1.31732 1.32801 0.85598 0.77645 0.80461 0.78572 1.19015 1.21019 1.16848 1.20685 0.92252 0.96416 0.90300 0.91954 1.22015 0.99831 1.01535 0.97166 1.19678 0.94648 0.93512 0.98602 1.21170 0.95377 0.97308 1.00916 1.21333 0.94054 0.98941 0.99973 1.21376 1.00711 0.92455 1.00292 1.21359 0.94732 0.98926 1.00036 1.20999 0.94317 0.98189 0.98586 0.91131 0.92705 0.93154 0.91665 0.93296 0.91591 0.91188 0.94840 0.89539 0.93644 0.93914 0.96379 0.96196 0.92529 0.90928 0.92417 0.91771 0.85325 0.84282 0.84545 0.85447 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.80 71.98 0.56 -2.74 16 2 C 0.07 1.84 2.78 44.92 0.12 1.97 16 3 C -0.18 -3.99 8.14 71.98 0.59 -3.40 16 4 N -0.53 -14.37 3.92 -850.26 -3.34 -17.71 16 5 C 0.06 1.77 4.32 86.30 0.37 2.14 16 6 C -0.09 -3.47 5.12 30.59 0.16 -3.31 16 7 C -0.01 -0.39 4.04 29.85 0.12 -0.26 16 8 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 9 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 10 C 0.00 0.05 5.47 84.66 0.46 0.51 16 11 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 12 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.25 -10.62 6.54 99.48 0.65 -9.96 16 16 C 0.11 2.48 1.97 44.17 0.09 2.57 16 17 H 0.06 1.32 5.38 -2.38 -0.01 1.30 16 18 C -0.15 -3.14 8.29 71.98 0.60 -2.54 16 19 C -0.06 -1.34 2.51 -19.87 -0.05 -1.39 16 20 C -0.13 -2.30 8.51 22.27 0.19 -2.11 16 21 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 24 C -0.10 -2.30 7.37 22.27 0.16 -2.14 16 25 H 0.07 1.57 4.73 -2.39 -0.01 1.56 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.33 7.27 -2.39 -0.02 1.32 16 28 H 0.07 2.05 5.93 -2.39 -0.01 2.04 16 29 H 0.05 1.18 6.68 -2.39 -0.02 1.16 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.37 6.45 -2.38 -0.02 1.36 16 32 H 0.03 1.03 6.65 -2.38 -0.02 1.01 16 33 H 0.09 2.58 5.55 -2.39 -0.01 2.56 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.79 6.28 -2.39 -0.01 1.77 16 36 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 37 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 38 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 41 H 0.06 1.38 6.14 -2.39 -0.01 1.36 16 42 H 0.13 1.89 7.98 -2.91 -0.02 1.86 16 43 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 46 H 0.11 2.84 7.95 -2.91 -0.02 2.82 16 Total: -1.00 -66.69 345.05 4.01 -62.68 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.88 Total: 17.34 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 4.29 Total: -48.12 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.04 Total: -78.68 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -66.69 4.01 -62.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292235482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.670 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds