Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38498 * 120.81743 * 2 1 4 4 C 1.38382 * 119.23166 * 180.27932 * 3 2 1 5 5 Cl 1.73598 * 119.55220 * 179.69954 * 4 3 2 6 6 N 1.31956 * 120.89538 * 359.72104 * 4 3 2 7 7 C 1.31828 * 121.78316 * 0.02562 * 6 4 3 8 8 C 1.38877 * 120.67271 * 0.02562 * 7 6 4 9 9 N 1.39783 * 120.47932 * 179.97438 * 8 7 6 10 10 S 1.65605 * 119.99734 * 326.19646 * 9 8 7 11 11 O 1.42102 * 106.39891 * 181.19203 * 10 9 8 12 12 O 1.42105 * 106.40095 * 314.11203 * 10 9 8 13 13 C 1.76197 * 107.21520 * 67.65053 * 10 9 8 14 14 H 1.07997 * 120.00248 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99848 * 179.97438 * 13 10 9 16 16 N 1.31520 * 119.99910 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00270 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46845 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47000 * 120.00356 * 17 15 13 20 20 H 1.48499 * 109.47277 * 240.00188 * 17 15 13 21 21 H 1.08996 * 109.46984 * 270.24720 * 1 2 3 22 22 H 1.09003 * 109.47301 * 30.24323 * 1 2 3 23 23 H 1.08997 * 109.47204 * 150.24622 * 1 2 3 24 24 H 1.07997 * 120.38283 * 359.97438 * 3 2 1 25 25 H 1.08006 * 119.66604 * 179.97438 * 7 6 4 26 26 H 0.97002 * 120.00165 * 145.92427 * 9 8 7 27 27 H 0.97002 * 119.99765 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1894 0.0000 4 6 3.5998 1.1511 -0.0059 5 17 4.4974 2.6370 -0.0139 6 7 4.2458 0.0005 -0.0060 7 6 3.6085 -1.1535 -0.0010 8 6 2.2204 -1.1963 0.0040 9 7 1.5489 -2.4223 0.0088 10 16 2.1935 -3.7225 -0.7889 11 8 1.2734 -4.7924 -0.6214 12 8 2.6088 -3.2466 -2.0619 13 6 3.6594 -4.1875 0.0709 14 1 3.9684 -3.6380 0.9478 15 6 4.4114 -5.2536 -0.3751 16 7 4.0348 -5.9231 -1.4426 17 14 5.9652 -5.7471 0.5369 18 1 6.1672 -4.8417 1.6966 19 1 5.8335 -7.1457 1.0184 20 1 7.1298 -5.6466 -0.3789 21 1 -0.3633 0.0044 1.0276 22 1 -0.3634 0.8878 -0.5176 23 1 -0.3633 -0.8922 -0.5100 24 1 1.6962 2.1358 -0.0004 25 1 4.1717 -2.0751 -0.0016 26 1 0.7073 -2.5125 0.4826 27 1 4.5641 -6.6729 -1.7566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300973132.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = -94.840006 kcal Electronic energy + Delta-G solvation = -17225.199338 eV Core-core repulsion = 14134.007825 eV Total energy + Delta-G solvation = -3091.191513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53861 -37.86946 -37.56134 -36.57435 -36.33323 -35.26185 -34.47255 -30.52823 -28.85441 -28.33824 -24.58165 -23.20983 -21.15587 -19.82227 -18.96347 -18.46778 -17.82501 -17.34777 -16.86767 -16.11129 -15.86562 -15.66884 -15.17858 -14.43139 -14.11315 -14.02548 -13.86092 -13.40531 -13.09955 -13.02966 -12.91724 -12.67636 -12.60102 -12.54003 -12.30468 -12.29339 -12.05663 -11.29837 -10.98157 -10.73031 -10.47773 -9.39496 -8.82486 -7.57366 -0.18205 0.03858 0.11081 0.79824 1.33037 1.36071 1.52930 2.16583 2.49570 2.52724 2.62725 3.47700 3.48706 3.59995 3.78981 3.88327 4.14023 4.36544 4.46402 4.72929 4.77358 4.82558 5.09517 5.20142 5.22570 5.43711 5.79762 6.04535 6.66074 6.71069 8.14287 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.006923 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.746953 B = 4043.299962 C = 5060.231176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.059 4.059 3 C -0.118 4.118 4 C 0.132 3.868 5 Cl -0.025 7.025 6 N -0.478 5.478 7 C 0.050 3.950 8 C 0.122 3.878 9 N -1.044 6.044 10 S 2.707 3.293 11 O -1.025 7.025 12 O -1.025 7.025 13 C -1.038 5.038 14 H 0.129 0.871 15 C 0.079 3.921 16 N -0.886 5.886 17 Si 0.987 3.013 18 H -0.247 1.247 19 H -0.257 1.257 20 H -0.261 1.261 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.067 0.933 24 H 0.189 0.811 25 H 0.173 0.827 26 H 0.432 0.568 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 13.772 6.129 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.034 4.034 5 Cl 0.003 6.997 6 N -0.189 5.189 7 C -0.109 4.109 8 C 0.021 3.979 9 N -0.792 5.792 10 S 2.809 3.191 11 O -1.015 7.015 12 O -1.015 7.015 13 C -1.171 5.171 14 H 0.147 0.853 15 C -0.136 4.136 16 N -0.516 5.516 17 Si 0.805 3.195 18 H -0.170 1.170 19 H -0.182 1.182 20 H -0.185 1.185 21 H 0.124 0.876 22 H 0.124 0.876 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.190 0.810 26 H 0.270 0.730 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.704 13.314 5.094 14.728 hybrid contribution 0.159 -0.602 0.674 0.918 sum -3.545 12.712 5.769 14.403 Atomic orbital electron populations 1.20941 0.86314 1.04997 1.05034 1.20598 0.99236 0.89813 0.97515 1.21926 0.91222 1.00394 1.00366 1.21940 0.90094 0.88370 1.02989 1.98371 1.76731 1.27872 1.96706 1.66928 1.41526 0.97612 1.12836 1.23399 0.91433 0.96800 0.99304 1.18559 0.92245 0.86960 1.00102 1.53484 1.35007 1.22253 1.68440 1.00570 0.75027 0.70266 0.73227 1.93354 1.67272 1.53589 1.87305 1.93370 1.84004 1.81093 1.43012 1.30855 1.30737 1.26921 1.28630 0.85349 1.25912 1.01784 0.92284 0.93596 1.69964 1.40569 1.19131 1.21975 0.85130 0.75744 0.79402 0.79200 1.16997 1.18154 1.18501 0.87607 0.87550 0.91375 0.79357 0.81037 0.73050 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.56 71.23 0.68 -1.34 15 2 C -0.06 -1.58 5.93 -19.55 -0.12 -1.69 15 3 C -0.12 -2.83 9.58 22.37 0.21 -2.61 15 4 C 0.13 3.98 7.27 84.71 0.62 4.60 15 5 Cl -0.03 -0.63 29.10 -2.72 -0.08 -0.71 15 6 N -0.48 -18.08 10.33 -186.17 -1.92 -20.01 15 7 C 0.05 2.04 10.17 84.85 0.86 2.91 15 8 C 0.12 4.36 6.19 38.28 0.24 4.59 15 9 N -1.04 -39.03 5.28 -51.09 -0.27 -39.30 15 10 S 2.71 138.65 4.65 -56.49 -0.26 138.39 15 11 O -1.03 -57.78 18.02 -128.00 -2.31 -60.09 15 12 O -1.03 -59.32 17.48 -128.00 -2.24 -61.56 15 13 C -1.04 -54.05 7.62 67.73 0.52 -53.53 15 14 H 0.13 6.02 6.85 -2.91 -0.02 6.00 15 15 C 0.08 4.20 5.46 84.65 0.46 4.66 15 16 N -0.89 -50.73 13.19 21.45 0.28 -50.45 15 17 Si 0.99 40.09 29.54 68.60 2.03 42.11 15 18 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 20 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 21 H 0.11 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.11 1.26 8.10 -2.39 -0.02 1.24 15 23 H 0.07 1.33 7.28 -2.39 -0.02 1.31 15 24 H 0.19 2.75 8.06 -2.91 -0.02 2.73 15 25 H 0.17 7.68 4.48 -2.91 -0.01 7.66 15 26 H 0.43 12.73 8.07 -96.74 -0.78 11.95 15 27 H 0.30 15.48 8.31 -92.71 -0.77 14.71 15 Total: -1.00 -73.61 269.98 -0.84 -74.45 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.46 Total: 19.57 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 3.47 Total: -42.42 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -1.91 Total: -109.75 kcal Atomic # 8 Polarization: -117.10 SS G_CDS: -4.54 Total: -121.65 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 138.65 SS G_CDS: -0.26 Total: 138.39 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -73.61 -0.84 -74.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300973132.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.388 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds