Wall clock time and date at job start Mon Mar 30 2020 01:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00120 * 2 1 4 4 H 1.48504 * 109.47578 * 239.99929 * 3 2 1 5 5 H 1.48499 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00106 * 3 2 1 7 7 C 1.38653 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00358 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.35758 * 117.00288 * 185.05796 * 9 7 2 11 11 C 1.38903 * 120.05291 * 174.71799 * 10 9 7 12 12 C 1.38086 * 119.96326 * 180.25559 * 11 10 9 13 13 C 1.38376 * 120.07079 * 359.48911 * 12 11 10 14 14 Br 1.89102 * 119.94671 * 180.23618 * 13 12 11 15 15 C 1.38479 * 120.10955 * 0.25532 * 13 12 11 16 16 Cl 1.73602 * 119.98844 * 180.02562 * 15 13 12 17 17 C 1.38231 * 120.03186 * 0.02562 * 15 13 12 18 18 H 0.96997 * 120.00213 * 0.02562 * 1 2 3 19 19 H 1.08006 * 120.02185 * 0.02562 * 11 10 9 20 20 H 1.08000 * 119.96085 * 179.76530 * 12 11 10 21 21 H 1.07997 * 120.03571 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0700 -3.5047 0.1046 11 6 1.4361 -4.7352 0.2205 12 6 2.1857 -5.8893 0.3337 13 6 3.5678 -5.8224 0.3211 14 35 4.5909 -7.4057 0.4696 15 6 4.2029 -4.5978 0.2004 16 17 5.9370 -4.5175 0.1843 17 6 3.4568 -3.4391 0.0926 18 1 -0.4850 0.8400 -0.0004 19 1 0.3574 -4.7889 0.2258 20 1 1.6927 -6.8456 0.4276 21 1 3.9521 -2.4840 -0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306168755.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:59 Heat of formation + Delta-G solvation = -13.765490 kcal Electronic energy + Delta-G solvation = -11498.790120 eV Core-core repulsion = 9026.517024 eV Total energy + Delta-G solvation = -2472.273096 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 275.929 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.31621 -37.00692 -35.83368 -32.59077 -31.11731 -30.30950 -27.94541 -25.54595 -22.33181 -21.43912 -18.37172 -17.45828 -15.22041 -15.10727 -14.72917 -14.18145 -14.08318 -13.29747 -12.96032 -12.75417 -11.96863 -11.35559 -11.22795 -11.19061 -11.03728 -10.65267 -10.58067 -10.05178 -9.85725 -9.59562 -8.98683 -8.37762 -7.51206 -6.68475 -4.27459 1.68919 1.81190 2.06435 2.58880 3.03211 3.04065 3.07233 3.79444 4.12296 4.84179 4.96113 5.30299 5.72538 5.81722 6.13007 6.24361 6.52798 6.69067 6.82442 7.09185 7.29397 7.74173 8.75432 9.36680 10.47545 Molecular weight = 275.93amu Principal moments of inertia in cm(-1) A = 0.041231 B = 0.005572 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.933443 B = 5023.869345 C = 5688.654267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.397 4.397 8 H 0.097 0.903 9 O -0.157 6.157 10 C 0.171 3.829 11 C -0.184 4.184 12 C -0.036 4.036 13 C -0.182 4.182 14 Br -0.069 7.069 15 C 0.046 3.954 16 Cl -0.075 7.075 17 C -0.225 4.225 18 H 0.275 0.725 19 H 0.132 0.868 20 H 0.131 0.869 21 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -9.901 0.719 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.114 0.886 9 O -0.058 6.058 10 C 0.114 3.886 11 C -0.204 4.204 12 C -0.056 4.056 13 C -0.263 4.263 14 Br 0.015 6.985 15 C 0.017 3.983 16 Cl -0.046 7.046 17 C -0.246 4.246 18 H 0.085 0.915 19 H 0.150 0.850 20 H 0.149 0.851 21 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.251 -10.223 0.748 12.556 hybrid contribution 0.422 1.180 -0.043 1.254 sum 7.673 -9.043 0.705 11.881 Atomic orbital electron populations 1.70018 1.06102 1.28480 1.43733 1.25376 0.95922 0.99130 0.95790 0.85715 0.78797 0.79118 0.79558 1.19163 1.20014 1.19159 1.21395 0.92044 0.80456 1.53384 0.88604 1.84000 1.34266 1.11558 1.75947 1.19243 0.89352 0.88378 0.91654 1.20286 1.00225 0.89615 1.10272 1.20524 0.90568 0.98108 0.96405 1.20990 0.94116 0.89496 1.21676 1.96512 1.72102 1.32154 1.97753 1.20391 0.83663 0.93327 1.00924 1.98332 1.10791 1.98691 1.96751 1.20977 0.93612 0.97661 1.12365 0.91464 0.85034 0.85115 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.46 13.67 55.48 0.76 -22.70 14 2 C 0.04 1.15 5.49 -17.52 -0.10 1.05 14 3 Si 0.94 19.37 29.55 -169.99 -5.02 14.34 14 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 14 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 14 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 14 7 C -0.40 -10.40 9.49 30.89 0.29 -10.11 14 8 H 0.10 2.32 5.20 -52.49 -0.27 2.04 14 9 O -0.16 -4.15 9.76 0.03 0.00 -4.15 14 10 C 0.17 3.83 6.65 -39.11 -0.26 3.57 14 11 C -0.18 -3.55 9.99 -39.39 -0.39 -3.95 14 12 C -0.04 -0.61 9.78 -39.59 -0.39 -1.00 14 13 C -0.18 -3.23 6.23 -39.44 -0.25 -3.48 14 14 Br -0.07 -1.05 32.52 -68.01 -2.21 -3.26 14 15 C 0.05 0.86 6.32 -39.50 -0.25 0.61 14 16 Cl -0.07 -1.25 27.73 -51.86 -1.44 -2.69 14 17 C -0.23 -4.71 8.95 -39.36 -0.35 -5.06 14 18 H 0.28 6.96 8.31 -40.82 -0.34 6.62 14 19 H 0.13 2.36 8.06 -52.48 -0.42 1.94 14 20 H 0.13 1.84 8.06 -52.49 -0.42 1.42 14 21 H 0.15 3.02 5.64 -52.49 -0.30 2.73 14 LS Contribution 232.71 15.07 3.51 3.51 Total: -1.00 -26.87 232.71 -6.65 -33.51 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -0.55 Total: -0.20 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -1.69 Total: -18.35 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.76 Total: -22.70 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: 0.00 Total: -4.15 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.44 Total: -2.69 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -2.21 Total: -3.26 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.87 -6.65 -33.51 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306168755.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.748 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds