Wall clock time and date at job start Mon Mar 30 2020 01:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00120 * 2 1 4 4 H 1.48504 * 109.47578 * 239.99929 * 3 2 1 5 5 H 1.48499 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00106 * 3 2 1 7 7 C 1.38653 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00358 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.35758 * 117.00288 * 185.05796 * 9 7 2 11 11 C 1.38903 * 120.05291 * 174.71799 * 10 9 7 12 12 C 1.38086 * 119.96326 * 180.25559 * 11 10 9 13 13 C 1.38376 * 120.07079 * 359.48911 * 12 11 10 14 14 Br 1.89102 * 119.94671 * 180.23618 * 13 12 11 15 15 C 1.38479 * 120.10955 * 0.25532 * 13 12 11 16 16 Cl 1.73602 * 119.98844 * 180.02562 * 15 13 12 17 17 C 1.38231 * 120.03186 * 0.02562 * 15 13 12 18 18 H 0.96997 * 120.00213 * 0.02562 * 1 2 3 19 19 H 1.08006 * 120.02185 * 0.02562 * 11 10 9 20 20 H 1.08000 * 119.96085 * 179.76530 * 12 11 10 21 21 H 1.07997 * 120.03571 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0700 -3.5047 0.1046 11 6 1.4361 -4.7352 0.2205 12 6 2.1857 -5.8893 0.3337 13 6 3.5678 -5.8224 0.3211 14 35 4.5909 -7.4057 0.4696 15 6 4.2029 -4.5978 0.2004 16 17 5.9370 -4.5175 0.1843 17 6 3.4568 -3.4391 0.0926 18 1 -0.4850 0.8400 -0.0004 19 1 0.3574 -4.7889 0.2258 20 1 1.6927 -6.8456 0.4276 21 1 3.9521 -2.4840 -0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306168755.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:59 Heat of formation + Delta-G solvation = -28.630033 kcal Electronic energy + Delta-G solvation = -11499.434695 eV Core-core repulsion = 9026.517024 eV Total energy + Delta-G solvation = -2472.917671 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 275.929 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.98279 -38.63680 -37.32594 -34.42693 -32.62615 -31.86929 -29.50347 -27.39365 -23.92137 -23.05077 -20.11942 -19.19049 -16.82272 -16.78444 -16.30629 -15.82686 -15.77260 -14.84638 -14.62958 -14.32917 -13.69495 -12.88132 -12.80471 -12.76244 -12.46468 -12.17670 -12.06621 -11.57299 -11.50555 -11.01747 -10.76651 -9.89814 -9.14355 -8.55041 -6.23985 0.11512 0.25898 0.60576 1.08829 1.36628 1.45375 1.51821 2.13530 2.51732 3.00068 3.29253 3.78892 4.16568 4.24856 4.57494 4.71597 4.89775 5.08998 5.15071 5.40124 5.70193 5.90019 6.88458 7.57938 8.65718 Molecular weight = 275.93amu Principal moments of inertia in cm(-1) A = 0.041231 B = 0.005572 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.933443 B = 5023.869345 C = 5688.654267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.012 4.012 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.420 4.420 8 H 0.105 0.895 9 O -0.206 6.206 10 C 0.145 3.855 11 C -0.184 4.184 12 C -0.023 4.023 13 C -0.173 4.173 14 Br -0.033 7.033 15 C 0.036 3.964 16 Cl -0.053 7.053 17 C -0.231 4.231 18 H 0.277 0.723 19 H 0.142 0.858 20 H 0.171 0.829 21 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 -11.550 0.919 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.212 4.212 3 Si 0.834 3.166 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.496 4.496 8 H 0.122 0.878 9 O -0.111 6.111 10 C 0.092 3.908 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.254 4.254 14 Br 0.052 6.948 15 C 0.007 3.993 16 Cl -0.024 7.024 17 C -0.251 4.251 18 H 0.086 0.914 19 H 0.160 0.840 20 H 0.188 0.812 21 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.955 -11.934 0.950 14.951 hybrid contribution 0.097 1.258 -0.077 1.264 sum 9.052 -10.676 0.873 14.024 Atomic orbital electron populations 1.70143 1.07915 1.29357 1.46941 1.26551 0.96814 1.02630 0.95197 0.84694 0.77551 0.74328 0.80054 1.18110 1.19434 1.18169 1.21810 0.92653 0.81072 1.54026 0.87793 1.83983 1.35468 1.12454 1.79165 1.19758 0.90257 0.88542 0.92254 1.20597 1.01192 0.89258 1.09394 1.20949 0.90301 0.98831 0.94186 1.21422 0.94980 0.90584 1.18422 1.96571 1.71281 1.29463 1.97532 1.20494 0.84926 0.93185 1.00709 1.98338 1.08753 1.98672 1.96599 1.20988 0.93324 0.98311 1.12523 0.91405 0.83994 0.81207 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 13.67 21.61 0.30 -52.08 14 2 C -0.01 -0.64 5.49 84.83 0.47 -0.18 14 3 Si 1.01 40.45 29.55 68.60 2.03 42.48 14 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 14 5 H -0.27 -10.34 7.11 99.48 0.71 -9.64 14 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 14 7 C -0.42 -22.87 9.49 67.92 0.64 -22.23 14 8 H 0.10 5.20 5.20 -2.91 -0.02 5.19 14 9 O -0.21 -11.42 9.76 -22.82 -0.22 -11.64 14 10 C 0.15 6.62 6.65 22.57 0.15 6.77 14 11 C -0.18 -6.94 9.99 22.39 0.22 -6.71 14 12 C -0.02 -0.72 9.78 22.27 0.22 -0.50 14 13 C -0.17 -5.63 6.23 22.36 0.14 -5.49 14 14 Br -0.03 -0.88 32.52 -20.37 -0.66 -1.54 14 15 C 0.04 1.29 6.32 22.33 0.14 1.43 14 16 Cl -0.05 -1.65 27.73 -2.72 -0.08 -1.72 14 17 C -0.23 -9.62 8.95 22.41 0.20 -9.42 14 18 H 0.28 14.66 8.31 -92.71 -0.77 13.88 14 19 H 0.14 4.99 8.06 -2.91 -0.02 4.96 14 20 H 0.17 3.97 8.06 -2.91 -0.02 3.95 14 21 H 0.14 5.83 5.64 -2.91 -0.02 5.82 14 Total: -1.00 -59.46 232.71 4.82 -54.65 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.27 Total: 6.19 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.18 Total: -36.32 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.30 Total: -52.08 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.22 Total: -11.64 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.72 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.66 Total: -1.54 kcal Total: -59.46 4.82 -54.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306168755.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.016 kcal (2) G-P(sol) polarization free energy of solvation -59.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds