Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29029 * 124.91747 * 2 1 4 4 C 1.31778 * 117.12461 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.74764 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.50020 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03568 * 179.97438 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00197 * 7 6 4 9 9 S 1.65593 * 120.00245 * 164.99838 * 8 7 6 10 10 O 1.42095 * 106.40441 * 178.54314 * 9 8 7 11 11 O 1.42107 * 106.40414 * 311.46258 * 9 8 7 12 12 C 1.76199 * 107.21807 * 65.00204 * 9 8 7 13 13 H 1.08003 * 120.00182 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00189 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00151 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 119.99887 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.47158 * 90.00322 * 16 14 12 18 18 H 1.48497 * 109.47146 * 210.00097 * 16 14 12 19 19 H 1.48502 * 109.47059 * 330.00261 * 16 14 12 20 20 S 1.70972 * 124.91719 * 180.31033 * 2 1 3 21 21 H 1.08996 * 109.47105 * 89.97366 * 1 2 3 22 22 H 1.08996 * 109.47148 * 209.97740 * 1 2 3 23 23 H 1.08998 * 109.47275 * 329.97840 * 1 2 3 24 24 H 1.08998 * 109.46862 * 270.00077 * 5 4 3 25 25 H 1.08993 * 109.47111 * 29.99602 * 5 4 3 26 26 H 1.08992 * 109.46828 * 150.00165 * 5 4 3 27 27 H 1.09001 * 109.47438 * 329.99978 * 7 6 4 28 28 H 1.09004 * 109.47113 * 210.00234 * 7 6 4 29 29 H 0.97000 * 119.99344 * 345.00166 * 8 7 6 30 30 H 0.96996 * 120.00063 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0246 0.0012 6 6 3.9353 -0.4006 0.0015 7 6 5.3574 -0.8994 0.0018 8 7 5.8184 -1.0599 1.3831 9 16 7.1884 -1.9336 1.7026 10 8 7.3837 -1.8738 3.1088 11 8 7.0618 -3.1546 0.9867 12 6 8.5401 -1.0684 0.9753 13 1 8.3666 -0.1445 0.4436 14 6 9.8193 -1.5713 1.0842 15 7 10.8283 -0.9252 0.5418 16 14 10.1194 -3.1696 2.0033 17 1 10.0180 -4.3106 1.0583 18 1 11.4758 -3.1462 2.6073 19 1 9.1028 -3.3227 3.0750 20 16 2.4856 -1.4019 -0.0076 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3633 -0.8901 0.5135 23 1 -0.3634 0.8898 0.5142 24 1 4.7673 2.3009 -1.0264 25 1 4.0903 2.8791 0.5149 26 1 5.4429 1.7221 0.5153 27 1 5.9948 -0.1803 -0.5127 28 1 5.4056 -1.8599 -0.5113 29 1 5.3210 -0.6545 2.1105 30 1 11.7281 -1.2792 0.6181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309004689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = -45.099812 kcal Electronic energy + Delta-G solvation = -17116.965797 eV Core-core repulsion = 14165.807982 eV Total energy + Delta-G solvation = -2951.157815 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96748 -35.77664 -35.28038 -34.47610 -33.06708 -32.57414 -29.35234 -28.34672 -26.44661 -24.16099 -22.72973 -19.34804 -18.83533 -17.94954 -17.47933 -16.69682 -15.85864 -15.29859 -14.85880 -14.81155 -13.84973 -13.59242 -13.44344 -13.39157 -13.13213 -13.07473 -12.78199 -12.41378 -12.13607 -11.98748 -11.53238 -11.38270 -11.17198 -10.84635 -10.67179 -10.53687 -9.93204 -9.64174 -9.31225 -9.28173 -9.22848 -8.66660 -8.59548 -6.83277 -5.38041 0.62637 1.31386 1.75755 2.03703 2.76015 3.05988 3.16215 3.25429 3.93313 4.00794 4.32720 4.56551 4.84063 4.91897 5.12017 5.19099 5.23069 5.28975 5.59369 5.66476 5.70589 5.84155 5.90275 5.98867 6.08928 6.34897 6.45380 7.44082 7.62196 7.72831 8.16526 8.67422 10.28817 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.037161 B = 0.005194 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.287344 B = 5389.799000 C = 5794.816466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.038 3.962 3 N -0.473 5.473 4 C 0.079 3.921 5 C -0.085 4.085 6 C -0.229 4.229 7 C 0.204 3.796 8 N -1.121 6.121 9 S 2.674 3.326 10 O -1.005 7.005 11 O -1.010 7.010 12 C -1.016 5.016 13 H 0.123 0.877 14 C 0.154 3.846 15 N -0.822 5.822 16 Si 0.801 3.199 17 H -0.246 1.246 18 H -0.255 1.255 19 H -0.220 1.220 20 S 0.130 5.870 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.407 0.593 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 2.247 -2.555 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.240 4.240 3 N -0.189 5.189 4 C -0.054 4.054 5 C -0.144 4.144 6 C -0.351 4.351 7 C 0.076 3.924 8 N -0.877 5.877 9 S 2.776 3.224 10 O -0.996 6.996 11 O -1.000 7.000 12 C -1.150 5.150 13 H 0.141 0.859 14 C -0.066 4.066 15 N -0.451 5.451 16 Si 0.621 3.379 17 H -0.170 1.170 18 H -0.179 1.179 19 H -0.142 1.142 20 S 0.386 5.614 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.239 0.761 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.500 0.787 -2.288 16.677 hybrid contribution 0.979 0.806 0.230 1.288 sum -15.521 1.593 -2.058 15.738 Atomic orbital electron populations 1.20412 0.85309 1.04080 1.03728 1.26967 1.01656 0.91574 1.03758 1.66171 1.04495 1.31737 1.16475 1.20261 0.90094 0.94173 1.00873 1.20465 0.96337 0.94340 1.03273 1.25825 0.99920 0.95629 1.13704 1.19414 0.86821 1.01970 0.84236 1.55634 1.45891 1.73987 1.12202 1.01413 0.73558 0.73644 0.73795 1.93483 1.85510 1.87492 1.33082 1.93408 1.86609 1.45335 1.74663 1.30423 1.08222 1.24327 1.52055 0.85940 1.24415 0.94859 0.96142 0.91184 1.69982 1.00426 1.37450 1.37213 0.87863 0.82895 0.84072 0.83032 1.16958 1.17862 1.14249 1.84061 0.97424 1.11828 1.68092 0.89717 0.90165 0.89425 0.90415 0.90658 0.89646 0.89356 0.89277 0.76109 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 36.00 0.38 -0.21 16 2 C 0.04 0.46 7.39 -13.46 -0.10 0.36 16 3 N -0.47 -6.70 10.53 -8.06 -0.08 -6.78 16 4 C 0.08 1.14 6.74 -84.23 -0.57 0.57 16 5 C -0.08 -1.06 9.82 36.01 0.35 -0.71 16 6 C -0.23 -3.38 5.99 -35.92 -0.21 -3.59 16 7 C 0.20 3.39 6.15 -5.19 -0.03 3.36 16 8 N -1.12 -21.08 5.99 -11.65 -0.07 -21.15 16 9 S 2.67 65.30 4.24 -107.50 -0.46 64.85 16 10 O -1.01 -26.67 16.02 -57.17 -0.92 -27.59 16 11 O -1.01 -26.38 16.30 -57.17 -0.93 -27.31 16 12 C -1.02 -27.55 10.26 30.60 0.31 -27.24 16 13 H 0.12 3.29 8.06 -52.48 -0.42 2.87 16 14 C 0.15 4.34 5.47 -17.82 -0.10 4.25 16 15 N -0.82 -23.34 13.96 55.43 0.77 -22.56 16 16 Si 0.80 20.36 26.54 -169.99 -4.51 15.85 16 17 H -0.25 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.25 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.22 -5.72 5.61 56.52 0.32 -5.40 16 20 S 0.13 1.65 23.18 -107.50 -2.49 -0.85 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.10 7.35 -51.93 -0.38 0.72 16 27 H 0.09 1.38 7.43 -51.93 -0.39 1.00 16 28 H 0.09 1.50 7.75 -51.93 -0.40 1.09 16 29 H 0.41 6.81 8.64 -34.47 -0.30 6.51 16 30 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -33.08 287.10 -7.55 -40.64 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.22 Total: 3.78 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 0.03 Total: -23.21 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.62 Total: -50.49 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -1.85 Total: -54.89 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.51 Total: 15.85 kcal Atomic # 16 Polarization: 66.95 SS G_CDS: -2.95 Total: 64.00 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.08 -7.55 -40.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309004689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.463 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds