Wall clock time and date at job start Mon Mar 30 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46979 * 2 1 4 4 H 1.09007 * 109.47014 * 303.86575 * 3 2 1 5 5 C 1.52997 * 109.47469 * 183.86514 * 3 2 1 6 6 C 1.52996 * 109.47674 * 175.99008 * 5 3 2 7 7 H 1.08999 * 109.46710 * 54.42145 * 6 5 3 8 8 C 1.52994 * 109.47427 * 174.42237 * 6 5 3 9 9 C 1.53008 * 109.46874 * 294.42628 * 6 5 3 10 10 C 1.52998 * 109.46937 * 174.99363 * 9 6 5 11 11 N 1.46504 * 109.46943 * 63.86387 * 3 2 1 12 12 C 1.39688 * 119.99731 * 261.95874 * 11 3 2 13 13 C 1.39333 * 119.95430 * 353.72343 * 12 11 3 14 14 C 1.38474 * 120.42486 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32780 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.88815 * 0.02696 * 15 14 13 17 17 C 1.41409 * 120.20669 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00252 * 28.26071 * 17 16 15 19 19 C 1.39926 * 119.99967 * 208.27192 * 17 16 15 20 20 N 1.30832 * 120.00316 * 12.22551 * 19 17 16 21 21 Si 1.86798 * 120.00044 * 192.22726 * 19 17 16 22 22 H 1.48501 * 109.47175 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47194 * 119.99656 * 21 19 17 24 24 H 1.48500 * 109.47562 * 239.99587 * 21 19 17 25 25 C 1.38276 * 119.94620 * 173.45331 * 12 11 3 26 26 H 1.08998 * 109.47304 * 297.11185 * 1 2 3 27 27 H 1.09006 * 109.46789 * 177.11524 * 1 2 3 28 28 H 1.08992 * 109.47226 * 57.11370 * 1 2 3 29 29 H 1.08997 * 109.47654 * 119.99814 * 2 1 3 30 30 H 1.08993 * 109.47312 * 240.00666 * 2 1 3 31 31 H 1.09005 * 109.46892 * 295.99053 * 5 3 2 32 32 H 1.08996 * 109.47185 * 55.98463 * 5 3 2 33 33 H 1.09004 * 109.47072 * 65.71482 * 8 6 5 34 34 H 1.09006 * 109.47106 * 185.71396 * 8 6 5 35 35 H 1.08996 * 109.47249 * 305.71109 * 8 6 5 36 36 H 1.08994 * 109.46660 * 294.99511 * 9 6 5 37 37 H 1.08993 * 109.46838 * 54.99762 * 9 6 5 38 38 H 1.08997 * 109.46965 * 179.97438 * 10 9 6 39 39 H 1.08996 * 109.47637 * 300.00372 * 10 9 6 40 40 H 1.09004 * 109.46920 * 60.00071 * 10 9 6 41 41 H 0.96993 * 119.99915 * 81.96246 * 11 3 2 42 42 H 1.08007 * 119.78768 * 359.96393 * 13 12 11 43 43 H 1.07997 * 119.83809 * 180.02562 * 14 13 12 44 44 H 1.07993 * 120.05633 * 180.02562 * 15 14 13 45 45 H 0.96998 * 120.00303 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.16372 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6211 1.9760 -0.8534 5 6 3.5668 1.4438 -0.0972 6 6 4.0704 2.8850 -0.1980 7 1 3.6797 3.4655 0.6377 8 6 5.5997 2.8951 -0.1551 9 6 3.5929 3.5012 -1.5145 10 6 3.9893 4.9782 -1.5596 11 7 1.6291 2.1057 1.2400 12 6 0.4959 2.9225 1.2528 13 6 -0.1670 3.2113 0.0618 14 6 -1.2915 4.0193 0.0633 15 6 -1.7675 4.5462 1.2430 16 6 -1.1083 4.2632 2.4540 17 6 -1.5916 4.8004 3.6696 18 1 -2.6426 5.0223 3.7818 19 6 -0.7082 5.0445 4.7268 20 7 0.5835 5.0065 4.5222 21 14 -1.3730 5.4248 6.4306 22 1 -2.8575 5.4086 6.3977 23 1 -0.8875 4.4015 7.3912 24 1 -0.9024 6.7670 6.8575 25 6 0.0305 3.4386 2.4483 26 1 -0.3634 0.4683 0.9147 27 1 -0.3633 -1.0264 -0.0517 28 1 -0.3633 0.5580 -0.8629 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.9878 0.9731 0.7912 32 1 3.8749 0.8885 -0.9831 33 1 5.9914 2.4016 -1.0447 34 1 5.9556 3.9249 -0.1245 35 1 5.9418 2.3660 0.7343 36 1 4.0546 2.9754 -2.3502 37 1 2.5088 3.4137 -1.5845 38 1 3.6495 5.4171 -2.4977 39 1 3.5277 5.5041 -0.7239 40 1 5.0736 5.0657 -1.4896 41 1 2.1439 1.9777 2.0520 42 1 0.1987 2.8024 -0.8686 43 1 -1.7983 4.2367 -0.8653 44 1 -2.6451 5.1756 1.2392 45 1 1.1959 5.1753 5.2552 46 1 0.5412 3.2121 3.3726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313435444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:49 Heat of formation + Delta-G solvation = -14.798646 kcal Electronic energy + Delta-G solvation = -22092.456213 eV Core-core repulsion = 19173.173821 eV Total energy + Delta-G solvation = -2919.282391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.70795 -37.00073 -35.12827 -33.39587 -31.80411 -30.46245 -29.35747 -28.61940 -26.68034 -25.16255 -24.26530 -22.66908 -21.44632 -20.41612 -19.76919 -19.18452 -17.19591 -15.84907 -15.32103 -15.05273 -14.75173 -14.42402 -14.13827 -13.96225 -13.60565 -13.27076 -12.77862 -12.61295 -12.34909 -12.19921 -11.95292 -11.93745 -11.85070 -11.51444 -11.34600 -11.21541 -11.00318 -10.94926 -10.81909 -10.65701 -10.54080 -10.31067 -10.27041 -10.11833 -9.89346 -9.55730 -9.35156 -9.15515 -8.66808 -7.19780 -6.63289 -6.04719 -4.26570 2.90797 3.13626 3.19189 3.28897 3.38452 4.03404 4.40515 4.80778 4.85901 4.99198 5.08863 5.36344 5.44979 5.52907 5.61020 5.66642 5.70349 5.75760 5.89168 5.91130 5.93710 6.00685 6.05945 6.08222 6.23455 6.26457 6.32587 6.34140 6.36097 6.44127 6.47924 6.60840 6.69509 6.72212 6.80801 6.95764 7.19072 7.21488 7.46150 7.52406 7.89677 8.02387 8.18161 8.25660 8.57833 8.81059 8.92751 9.08320 9.19088 10.35714 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.005272 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.127856 B = 5309.404191 C = 5770.074331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.152 3.848 4 H 0.086 0.914 5 C -0.121 4.121 6 C -0.091 4.091 7 H 0.081 0.919 8 C -0.146 4.146 9 C -0.118 4.118 10 C -0.151 4.151 11 N -0.750 5.750 12 C 0.222 3.778 13 C -0.291 4.291 14 C -0.070 4.070 15 C -0.256 4.256 16 C 0.139 3.861 17 C -0.466 4.466 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.800 5.800 21 Si 0.904 3.096 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.276 1.276 25 C -0.226 4.226 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.387 0.613 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.274 0.726 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 -5.993 -7.499 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.103 0.897 5 C -0.160 4.160 6 C -0.110 4.110 7 H 0.099 0.901 8 C -0.203 4.203 9 C -0.155 4.155 10 C -0.209 4.209 11 N -0.382 5.382 12 C 0.124 3.876 13 C -0.314 4.314 14 C -0.089 4.089 15 C -0.277 4.277 16 C 0.136 3.864 17 C -0.497 4.497 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.427 5.427 21 Si 0.729 3.271 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.202 1.202 25 C -0.250 4.250 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.220 0.780 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.800 -5.995 -7.566 12.411 hybrid contribution 0.013 0.192 1.117 1.133 sum 7.812 -5.803 -6.450 11.675 Atomic orbital electron populations 1.21711 0.95296 1.00043 1.03199 1.22018 0.96959 0.97668 1.00789 1.20875 0.92732 0.91992 0.89871 0.89653 1.21946 0.95836 0.96691 1.01485 1.21123 0.94752 0.96211 0.98876 0.90060 1.21869 0.96056 1.01373 1.00983 1.21588 1.01515 0.95663 0.96726 1.21784 1.00784 0.96660 1.01648 1.44441 1.29968 1.53781 1.09981 1.17591 0.86135 0.89885 0.94038 1.19908 1.03203 1.13385 0.94888 1.20279 0.95622 0.96867 0.96083 1.20878 1.04863 1.09157 0.92792 1.17328 0.90063 0.87314 0.91714 1.19560 0.95454 1.37849 0.96834 0.90808 1.25823 0.94514 0.93241 1.00400 1.69849 1.02675 1.37276 1.32896 0.86339 0.80334 0.78395 0.82025 1.18602 1.19993 1.20203 1.20757 1.03238 1.06014 0.94959 0.91494 0.94208 0.92896 0.92593 0.92639 0.92184 0.91798 0.93297 0.92800 0.93139 0.92917 0.91398 0.93303 0.92346 0.93155 0.77976 0.89561 0.89906 0.89613 0.91480 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.80 37.16 0.33 -1.90 16 2 C -0.14 -1.85 5.62 -26.73 -0.15 -2.00 16 3 C 0.15 2.24 2.06 -67.93 -0.14 2.10 16 4 H 0.09 1.36 3.78 -51.93 -0.20 1.16 16 5 C -0.12 -1.52 4.30 -26.73 -0.11 -1.63 16 6 C -0.09 -1.20 2.33 -90.62 -0.21 -1.41 16 7 H 0.08 1.31 7.57 -51.93 -0.39 0.92 16 8 C -0.15 -1.65 8.80 37.15 0.33 -1.32 16 9 C -0.12 -1.53 5.28 -26.73 -0.14 -1.68 16 10 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 11 N -0.75 -13.44 4.16 -52.21 -0.22 -13.66 16 12 C 0.22 4.92 5.44 -83.86 -0.46 4.46 16 13 C -0.29 -6.33 8.29 -39.09 -0.32 -6.65 16 14 C -0.07 -1.59 10.01 -39.70 -0.40 -1.98 16 15 C -0.26 -6.46 9.79 -38.83 -0.38 -6.84 16 16 C 0.14 3.76 5.55 -106.85 -0.59 3.16 16 17 C -0.47 -12.68 9.06 -37.74 -0.34 -13.02 16 18 H 0.07 1.95 7.87 -52.49 -0.41 1.54 16 19 C 0.08 1.96 5.23 -17.35 -0.09 1.86 16 20 N -0.80 -20.99 10.90 55.55 0.61 -20.39 16 21 Si 0.90 19.21 29.58 -169.99 -5.03 14.19 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 C -0.23 -5.79 8.50 -38.68 -0.33 -6.11 16 26 H 0.07 1.22 6.94 -51.93 -0.36 0.86 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.82 7.63 -51.93 -0.40 0.43 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.60 6.85 -51.93 -0.36 0.25 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.00 6.29 -51.93 -0.33 0.68 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 41 H 0.39 6.87 8.75 -40.82 -0.36 6.51 16 42 H 0.09 1.70 5.57 -52.48 -0.29 1.41 16 43 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 46 H 0.12 3.09 6.26 -52.49 -0.33 2.76 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -26.82 354.71 -9.92 -36.74 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -7.97 Total: 12.32 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: -2.66 Total: -34.56 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.39 Total: -34.04 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.82 -9.92 -36.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.944 kcal (2) G-P(sol) polarization free energy of solvation -26.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds