Wall clock time and date at job start Mon Mar 30 2020 01:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46979 * 2 1 4 4 H 1.09007 * 109.47014 * 303.86575 * 3 2 1 5 5 C 1.52997 * 109.47469 * 183.86514 * 3 2 1 6 6 C 1.52996 * 109.47674 * 175.99008 * 5 3 2 7 7 H 1.08999 * 109.46710 * 54.42145 * 6 5 3 8 8 C 1.52994 * 109.47427 * 174.42237 * 6 5 3 9 9 C 1.53008 * 109.46874 * 294.42628 * 6 5 3 10 10 C 1.52998 * 109.46937 * 174.99363 * 9 6 5 11 11 N 1.46504 * 109.46943 * 63.86387 * 3 2 1 12 12 C 1.39688 * 119.99731 * 261.95874 * 11 3 2 13 13 C 1.39333 * 119.95430 * 353.72343 * 12 11 3 14 14 C 1.38474 * 120.42486 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32780 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.88815 * 0.02696 * 15 14 13 17 17 C 1.41409 * 120.20669 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00252 * 28.26071 * 17 16 15 19 19 C 1.39926 * 119.99967 * 208.27192 * 17 16 15 20 20 N 1.30832 * 120.00316 * 12.22551 * 19 17 16 21 21 Si 1.86798 * 120.00044 * 192.22726 * 19 17 16 22 22 H 1.48501 * 109.47175 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47194 * 119.99656 * 21 19 17 24 24 H 1.48500 * 109.47562 * 239.99587 * 21 19 17 25 25 C 1.38276 * 119.94620 * 173.45331 * 12 11 3 26 26 H 1.08998 * 109.47304 * 297.11185 * 1 2 3 27 27 H 1.09006 * 109.46789 * 177.11524 * 1 2 3 28 28 H 1.08992 * 109.47226 * 57.11370 * 1 2 3 29 29 H 1.08997 * 109.47654 * 119.99814 * 2 1 3 30 30 H 1.08993 * 109.47312 * 240.00666 * 2 1 3 31 31 H 1.09005 * 109.46892 * 295.99053 * 5 3 2 32 32 H 1.08996 * 109.47185 * 55.98463 * 5 3 2 33 33 H 1.09004 * 109.47072 * 65.71482 * 8 6 5 34 34 H 1.09006 * 109.47106 * 185.71396 * 8 6 5 35 35 H 1.08996 * 109.47249 * 305.71109 * 8 6 5 36 36 H 1.08994 * 109.46660 * 294.99511 * 9 6 5 37 37 H 1.08993 * 109.46838 * 54.99762 * 9 6 5 38 38 H 1.08997 * 109.46965 * 179.97438 * 10 9 6 39 39 H 1.08996 * 109.47637 * 300.00372 * 10 9 6 40 40 H 1.09004 * 109.46920 * 60.00071 * 10 9 6 41 41 H 0.96993 * 119.99915 * 81.96246 * 11 3 2 42 42 H 1.08007 * 119.78768 * 359.96393 * 13 12 11 43 43 H 1.07997 * 119.83809 * 180.02562 * 14 13 12 44 44 H 1.07993 * 120.05633 * 180.02562 * 15 14 13 45 45 H 0.96998 * 120.00303 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.16372 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6211 1.9760 -0.8534 5 6 3.5668 1.4438 -0.0972 6 6 4.0704 2.8850 -0.1980 7 1 3.6797 3.4655 0.6377 8 6 5.5997 2.8951 -0.1551 9 6 3.5929 3.5012 -1.5145 10 6 3.9893 4.9782 -1.5596 11 7 1.6291 2.1057 1.2400 12 6 0.4959 2.9225 1.2528 13 6 -0.1670 3.2113 0.0618 14 6 -1.2915 4.0193 0.0633 15 6 -1.7675 4.5462 1.2430 16 6 -1.1083 4.2632 2.4540 17 6 -1.5916 4.8004 3.6696 18 1 -2.6426 5.0223 3.7818 19 6 -0.7082 5.0445 4.7268 20 7 0.5835 5.0065 4.5222 21 14 -1.3730 5.4248 6.4306 22 1 -2.8575 5.4086 6.3977 23 1 -0.8875 4.4015 7.3912 24 1 -0.9024 6.7670 6.8575 25 6 0.0305 3.4386 2.4483 26 1 -0.3634 0.4683 0.9147 27 1 -0.3633 -1.0264 -0.0517 28 1 -0.3633 0.5580 -0.8629 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.9878 0.9731 0.7912 32 1 3.8749 0.8885 -0.9831 33 1 5.9914 2.4016 -1.0447 34 1 5.9556 3.9249 -0.1245 35 1 5.9418 2.3660 0.7343 36 1 4.0546 2.9754 -2.3502 37 1 2.5088 3.4137 -1.5845 38 1 3.6495 5.4171 -2.4977 39 1 3.5277 5.5041 -0.7239 40 1 5.0736 5.0657 -1.4896 41 1 2.1439 1.9777 2.0520 42 1 0.1987 2.8024 -0.8686 43 1 -1.7983 4.2367 -0.8653 44 1 -2.6451 5.1756 1.2392 45 1 1.1959 5.1753 5.2552 46 1 0.5412 3.2121 3.3726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313435444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:48 Heat of formation + Delta-G solvation = -26.384874 kcal Electronic energy + Delta-G solvation = -22092.958629 eV Core-core repulsion = 19173.173821 eV Total energy + Delta-G solvation = -2919.784808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16850 -38.52480 -36.46178 -35.23068 -33.31937 -31.60230 -31.23899 -29.87268 -28.16920 -27.10109 -25.38262 -23.79461 -23.10166 -22.12612 -21.12238 -20.45345 -19.02940 -17.61570 -16.78406 -16.48973 -16.16465 -16.01376 -15.41115 -15.23754 -14.80587 -14.67448 -14.47196 -14.02828 -13.97010 -13.50830 -13.41594 -13.08664 -13.01275 -12.90619 -12.77680 -12.74624 -12.54397 -12.43189 -12.14194 -12.02590 -11.91774 -11.72000 -11.48970 -11.37333 -11.25297 -11.23724 -11.00936 -10.94167 -10.33736 -9.14553 -8.55217 -7.76358 -6.30049 1.11956 1.37685 1.39666 1.52192 1.58932 2.24497 2.87110 2.95314 3.76746 3.89722 3.95447 4.07432 4.25681 4.30946 4.40592 4.55039 4.56798 4.62690 4.69852 4.75096 4.82806 4.86120 4.93410 4.95175 5.02714 5.03678 5.12370 5.13393 5.19082 5.23780 5.26268 5.28387 5.35566 5.38235 5.39575 5.53477 5.54865 5.59263 5.64788 5.69726 6.03300 6.17028 6.27059 6.34951 6.65607 7.01663 7.11297 7.16963 7.34107 8.44928 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.005272 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.127856 B = 5309.404191 C = 5770.074331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.149 3.851 4 H 0.078 0.922 5 C -0.113 4.113 6 C -0.090 4.090 7 H 0.042 0.958 8 C -0.141 4.141 9 C -0.116 4.116 10 C -0.151 4.151 11 N -0.741 5.741 12 C 0.237 3.763 13 C -0.286 4.286 14 C -0.068 4.068 15 C -0.286 4.286 16 C 0.108 3.892 17 C -0.507 4.507 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.829 5.829 21 Si 0.978 3.022 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.267 1.267 25 C -0.254 4.254 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.387 0.613 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.281 0.719 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -7.490 -8.929 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.044 3.956 4 H 0.096 0.904 5 C -0.151 4.151 6 C -0.109 4.109 7 H 0.061 0.939 8 C -0.198 4.198 9 C -0.153 4.153 10 C -0.208 4.208 11 N -0.371 5.371 12 C 0.135 3.865 13 C -0.308 4.308 14 C -0.086 4.086 15 C -0.307 4.307 16 C 0.105 3.895 17 C -0.537 4.537 18 H 0.084 0.916 19 C -0.178 4.178 20 N -0.456 5.456 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.192 1.192 25 C -0.278 4.278 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.220 0.780 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.420 -7.519 -9.024 15.057 hybrid contribution -0.413 0.592 1.415 1.588 sum 9.008 -6.927 -7.609 13.675 Atomic orbital electron populations 1.21673 0.96664 1.00726 1.01010 1.21977 0.95579 0.96804 1.02448 1.21114 0.94570 0.92298 0.87653 0.90399 1.21900 0.93630 0.96522 1.03058 1.21066 0.96159 0.96132 0.97519 0.93896 1.21819 0.94327 1.01582 1.02076 1.21577 1.00428 0.95827 0.97461 1.21774 1.01570 0.96583 1.00865 1.44550 1.28358 1.52739 1.11493 1.17606 0.86721 0.89069 0.93106 1.20191 1.02522 1.12484 0.95635 1.20627 0.95687 0.95917 0.96409 1.21000 1.05567 1.10731 0.93406 1.17699 0.91144 0.88074 0.92568 1.19783 0.95539 1.39995 0.98406 0.91553 1.26633 0.94589 0.92584 1.03998 1.69919 1.03742 1.37695 1.34283 0.85228 0.79487 0.78585 0.76752 1.18528 1.18994 1.19223 1.20657 1.03831 1.07754 0.95544 0.95206 0.92400 0.93234 0.92298 0.89488 0.91625 0.88977 0.91349 0.93090 0.92857 0.90476 0.93339 0.92402 0.95235 0.91654 0.77981 0.86920 0.86897 0.89785 0.90828 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.80 71.98 0.63 -3.50 16 2 C -0.13 -3.14 5.62 30.60 0.17 -2.97 16 3 C 0.15 4.06 2.06 44.99 0.09 4.15 16 4 H 0.08 2.29 3.78 -2.38 -0.01 2.28 16 5 C -0.11 -2.48 4.30 30.59 0.13 -2.35 16 6 C -0.09 -2.21 2.33 -10.79 -0.03 -2.23 16 7 H 0.04 1.38 7.57 -2.39 -0.02 1.37 16 8 C -0.14 -2.82 8.80 71.98 0.63 -2.18 16 9 C -0.12 -2.77 5.28 30.60 0.16 -2.61 16 10 C -0.15 -3.71 9.67 71.98 0.70 -3.02 16 11 N -0.74 -26.50 4.16 -319.10 -1.33 -27.83 16 12 C 0.24 10.68 5.44 38.16 0.21 10.88 16 13 C -0.29 -12.31 8.29 22.59 0.19 -12.12 16 14 C -0.07 -3.09 10.01 22.20 0.22 -2.87 16 15 C -0.29 -15.01 9.79 22.75 0.22 -14.79 16 16 C 0.11 6.16 5.55 -21.31 -0.12 6.04 16 17 C -0.51 -29.05 9.06 23.46 0.21 -28.84 16 18 H 0.07 3.73 7.87 -2.91 -0.02 3.71 16 19 C 0.04 1.87 5.23 85.25 0.45 2.31 16 20 N -0.83 -45.23 10.90 21.82 0.24 -45.00 16 21 Si 0.98 40.49 29.58 68.60 2.03 42.52 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 C -0.25 -13.63 8.50 22.86 0.19 -13.44 16 26 H 0.03 1.06 6.94 -2.39 -0.02 1.05 16 27 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.05 1.44 7.63 -2.39 -0.02 1.42 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.05 1.04 6.85 -2.38 -0.02 1.03 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.35 6.29 -2.39 -0.02 1.33 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.39 6.70 -2.38 -0.02 1.38 16 41 H 0.39 13.91 8.75 -92.71 -0.81 13.10 16 42 H 0.11 4.24 5.57 -2.91 -0.02 4.23 16 43 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.08 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 46 H 0.10 5.41 6.26 -2.91 -0.02 5.40 16 Total: -1.00 -61.45 354.71 5.14 -56.31 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: 0.13 Total: 41.53 kcal Atomic # 6 Polarization: -71.60 SS G_CDS: 4.07 Total: -67.53 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.09 Total: -72.83 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -61.45 5.14 -56.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.924 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds