Wall clock time and date at job start Mon Mar 30 2020 01:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 H 1.09001 * 109.47458 * 305.00598 * 3 2 1 5 5 C 1.53004 * 109.47003 * 65.00394 * 3 2 1 6 6 C 1.53000 * 109.47395 * 184.99999 * 3 2 1 7 7 C 1.52991 * 109.47406 * 175.00303 * 6 3 2 8 8 H 1.09000 * 109.47352 * 54.99912 * 7 6 3 9 9 C 1.53003 * 109.47346 * 174.99940 * 7 6 3 10 10 C 1.53002 * 109.47239 * 183.81519 * 9 7 6 11 11 N 1.46504 * 109.47293 * 295.00166 * 7 6 3 12 12 C 1.39678 * 120.00011 * 136.12319 * 11 7 6 13 13 C 1.39329 * 119.95529 * 7.07771 * 12 11 7 14 14 C 1.38478 * 120.42904 * 179.72265 * 13 12 11 15 15 C 1.37691 * 120.32031 * 0.27604 * 14 13 12 16 16 C 1.40747 * 119.89699 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.20977 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99954 * 204.47183 * 17 16 15 19 19 C 1.39924 * 119.99825 * 24.46760 * 17 16 15 20 20 N 1.30840 * 120.00235 * 18.52779 * 19 17 16 21 21 Si 1.86800 * 119.99900 * 198.52326 * 19 17 16 22 22 H 1.48500 * 109.46989 * 90.00438 * 21 19 17 23 23 H 1.48500 * 109.47383 * 210.00179 * 21 19 17 24 24 H 1.48498 * 109.46997 * 329.99992 * 21 19 17 25 25 C 1.38286 * 119.95412 * 187.35435 * 12 11 7 26 26 H 1.08998 * 109.46736 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47113 * 299.99415 * 1 2 3 28 28 H 1.08996 * 109.47416 * 59.99819 * 1 2 3 29 29 H 1.08996 * 109.47113 * 240.00585 * 2 1 3 30 30 H 1.08996 * 109.47416 * 120.00181 * 2 1 3 31 31 H 1.08998 * 109.47306 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.46808 * 299.99741 * 5 3 2 33 33 H 1.09004 * 109.47247 * 59.99502 * 5 3 2 34 34 H 1.09006 * 109.46710 * 54.99882 * 6 3 2 35 35 H 1.09001 * 109.46759 * 295.00564 * 6 3 2 36 36 H 1.08992 * 109.46932 * 303.81972 * 9 7 6 37 37 H 1.09004 * 109.46524 * 63.81836 * 9 7 6 38 38 H 1.08999 * 109.46769 * 181.62097 * 10 9 7 39 39 H 1.09000 * 109.47323 * 301.62814 * 10 9 7 40 40 H 1.08998 * 109.46769 * 61.62312 * 10 9 7 41 41 H 0.97004 * 119.99654 * 316.12851 * 11 7 6 42 42 H 1.08004 * 119.78670 * 359.97438 * 13 12 11 43 43 H 1.08003 * 119.84179 * 180.29329 * 14 13 12 44 44 H 1.08002 * 120.04988 * 179.97438 * 15 14 13 45 45 H 0.96996 * 119.99911 * 179.97438 * 20 19 17 46 46 H 1.08005 * 120.15933 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0644 2.8851 -0.2510 8 1 3.6970 3.4716 0.5910 9 6 5.5944 2.8961 -0.2513 10 6 6.0940 4.3420 -0.2808 11 7 3.5716 3.4658 -1.5025 12 6 3.0559 4.7638 -1.5148 13 6 3.1448 5.5585 -0.3738 14 6 2.6420 6.8487 -0.3768 15 6 2.0431 7.3587 -1.5069 16 6 1.9404 6.5657 -2.6651 17 6 1.3261 7.0826 -3.8292 18 1 0.8921 6.4105 -4.5545 19 6 1.2805 8.4649 -4.0411 20 7 2.0930 9.2543 -3.3864 21 14 0.0598 9.1834 -5.2589 22 1 -1.2107 9.4995 -4.5581 23 1 0.6217 10.4248 -5.8492 24 1 -0.2020 8.1969 -6.3377 25 6 2.4528 5.2565 -2.6575 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9981 3.1543 1.3073 32 1 0.5489 2.1252 1.3970 33 1 2.0699 1.5874 2.1492 34 1 3.8570 0.8801 -1.0114 35 1 4.0029 0.9836 0.7596 36 1 5.9614 2.4031 0.6487 37 1 5.9613 2.3670 -1.1308 38 1 7.1835 4.3493 -0.3100 39 1 5.7032 4.8435 -1.1661 40 1 5.7510 4.8631 0.6130 41 1 3.6033 2.9487 -2.3227 42 1 3.6125 5.1670 0.5176 43 1 2.7202 7.4581 0.5115 44 1 1.6521 8.3655 -1.5042 45 1 2.0616 10.2126 -3.5337 46 1 2.3797 4.6400 -3.5413 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313435446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:53 Heat of formation + Delta-G solvation = -27.410212 kcal Electronic energy + Delta-G solvation = -21769.065964 eV Core-core repulsion = 18849.236694 eV Total energy + Delta-G solvation = -2919.829270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16399 -38.51986 -36.58656 -35.23722 -33.21833 -31.66129 -31.57244 -29.50466 -28.02945 -27.09381 -25.98812 -23.45569 -23.01169 -22.33655 -20.91901 -20.52198 -19.19298 -17.46407 -16.79560 -16.51908 -16.18566 -16.05774 -15.59378 -15.12020 -15.00580 -14.53447 -14.38777 -14.18874 -13.91554 -13.52119 -13.45071 -13.21492 -13.01529 -12.86277 -12.76919 -12.64691 -12.52519 -12.36427 -12.19372 -12.12848 -11.85951 -11.70689 -11.48697 -11.38123 -11.29167 -11.20254 -10.99887 -10.95039 -10.30430 -9.28838 -8.59079 -7.81905 -6.29323 1.08328 1.37224 1.40824 1.51011 1.62457 2.22975 2.82945 2.91692 3.71407 3.89488 4.05231 4.07829 4.25541 4.32592 4.40196 4.49325 4.54686 4.60598 4.70906 4.75576 4.84004 4.84795 4.91789 4.95726 5.07315 5.11635 5.14721 5.16077 5.17480 5.19407 5.25360 5.26056 5.30645 5.36357 5.44206 5.48060 5.53884 5.59541 5.64441 5.68935 6.02904 6.07765 6.25529 6.37229 6.68531 6.97033 7.06234 7.14651 7.33961 8.39225 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.004620 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.826293 B = 6059.283675 C = 6945.905444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.089 4.089 4 H 0.046 0.954 5 C -0.146 4.146 6 C -0.113 4.113 7 C 0.148 3.852 8 H 0.077 0.923 9 C -0.129 4.129 10 C -0.146 4.146 11 N -0.740 5.740 12 C 0.249 3.751 13 C -0.293 4.293 14 C -0.078 4.078 15 C -0.235 4.235 16 C 0.114 3.886 17 C -0.506 4.506 18 H 0.069 0.931 19 C 0.038 3.962 20 N -0.825 5.825 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.315 4.315 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.391 0.609 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.285 0.715 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -14.638 7.418 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.065 0.935 5 C -0.203 4.203 6 C -0.152 4.152 7 C 0.043 3.957 8 H 0.095 0.905 9 C -0.167 4.167 10 C -0.203 4.203 11 N -0.371 5.371 12 C 0.148 3.852 13 C -0.315 4.315 14 C -0.097 4.097 15 C -0.256 4.256 16 C 0.111 3.889 17 C -0.536 4.536 18 H 0.087 0.913 19 C -0.177 4.177 20 N -0.451 5.451 21 Si 0.800 3.200 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.339 4.339 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.224 0.776 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.594 -14.437 7.641 16.540 hybrid contribution -0.521 0.777 -1.094 1.439 sum 2.073 -13.661 6.548 15.290 Atomic orbital electron populations 1.21826 0.96321 1.01705 1.01372 1.21529 0.95634 0.95552 1.02271 1.21062 0.95637 0.96230 0.97790 0.93506 1.21882 1.00973 1.00013 0.97471 1.21920 0.95021 0.95182 1.03037 1.21104 0.92958 0.94315 0.87303 0.90523 1.21966 0.95552 0.96563 1.02665 1.21709 1.00257 0.97310 1.01053 1.44512 1.69934 1.12415 1.10197 1.17389 0.90163 0.84815 0.92862 1.20142 1.17419 0.95697 0.98272 1.20715 0.97084 0.95284 0.96614 1.21025 1.10225 1.00605 0.93741 1.17658 0.87595 0.91133 0.92507 1.19779 1.35228 0.92653 1.05950 0.91321 1.26715 0.95810 0.97125 0.98061 1.69934 1.31052 1.06072 1.38017 0.85264 0.78498 0.78039 0.78215 1.18746 1.19149 1.18352 1.20506 1.16076 0.99219 0.98146 0.91838 0.92681 0.94163 0.91976 0.90892 0.94145 0.93237 0.91377 0.91307 0.89241 0.89584 0.91849 0.92464 0.94963 0.93444 0.77562 0.86965 0.87955 0.89110 0.90407 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.67 71.98 0.70 -2.28 16 2 C -0.11 -2.08 5.40 30.59 0.17 -1.91 16 3 C -0.09 -2.02 2.33 -10.79 -0.03 -2.04 16 4 H 0.05 1.38 7.62 -2.39 -0.02 1.36 16 5 C -0.15 -3.41 8.71 71.98 0.63 -2.79 16 6 C -0.11 -2.30 4.33 30.59 0.13 -2.16 16 7 C 0.15 3.84 1.99 44.99 0.09 3.93 16 8 H 0.08 2.22 3.98 -2.39 -0.01 2.21 16 9 C -0.13 -2.96 5.62 30.60 0.17 -2.79 16 10 C -0.15 -4.12 8.72 71.98 0.63 -3.49 16 11 N -0.74 -24.46 4.04 -319.12 -1.29 -25.75 16 12 C 0.25 10.85 5.82 38.16 0.22 11.07 16 13 C -0.29 -12.79 8.19 22.59 0.19 -12.61 16 14 C -0.08 -3.79 10.02 22.20 0.22 -3.57 16 15 C -0.24 -13.11 8.70 22.75 0.20 -12.91 16 16 C 0.11 6.50 5.57 -21.31 -0.12 6.38 16 17 C -0.51 -28.92 9.05 23.46 0.21 -28.71 16 18 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 19 C 0.04 1.99 5.12 85.25 0.44 2.43 16 20 N -0.82 -45.40 11.00 21.82 0.24 -45.16 16 21 Si 0.98 40.13 29.60 68.60 2.03 42.16 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 C -0.32 -16.13 9.64 22.86 0.22 -15.91 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.06 6.56 -2.39 -0.02 1.04 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 1.11 6.46 -2.39 -0.02 1.10 16 32 H 0.05 1.17 6.57 -2.38 -0.02 1.15 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 1.13 6.76 -2.39 -0.02 1.12 16 40 H 0.05 1.35 7.40 -2.39 -0.02 1.34 16 41 H 0.39 12.21 8.81 -92.71 -0.82 11.40 16 42 H 0.11 4.31 5.00 -2.91 -0.01 4.30 16 43 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.09 5.33 6.18 -2.91 -0.02 5.31 16 45 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 46 H 0.08 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -61.82 353.91 5.17 -56.64 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.13 Total: 39.48 kcal Atomic # 6 Polarization: -71.43 SS G_CDS: 4.06 Total: -67.37 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.05 Total: -70.91 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -61.82 5.17 -56.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.232 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds