Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47250 * 270.00353 * 3 2 1 5 5 H 1.48500 * 109.46915 * 30.00466 * 3 2 1 6 6 H 1.48498 * 109.46796 * 150.00615 * 3 2 1 7 7 C 1.37872 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99949 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00479 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47486 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.76203 * 103.00245 * 180.02562 * 11 10 9 13 13 C 1.38928 * 120.06773 * 0.25561 * 12 11 10 14 14 C 1.38099 * 119.94528 * 180.25587 * 13 12 11 15 15 C 1.38406 * 120.08287 * 359.48724 * 14 13 12 16 16 Cl 1.73603 * 119.92679 * 180.27879 * 15 14 13 17 17 C 1.38379 * 120.14307 * 0.25899 * 15 14 13 18 18 C 1.38194 * 120.05235 * 359.97438 * 17 15 14 19 19 Cl 1.73601 * 120.04094 * 180.02562 * 18 17 15 20 20 H 0.97003 * 119.99952 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46765 * 59.99561 * 9 7 2 22 22 H 1.09007 * 109.47199 * 300.00252 * 9 7 2 23 23 H 1.09003 * 109.47157 * 60.00192 * 10 9 7 24 24 H 1.08993 * 109.47473 * 300.00340 * 10 9 7 25 25 H 1.07997 * 120.02942 * 0.02652 * 13 12 11 26 26 H 1.08002 * 119.96143 * 179.77231 * 14 13 12 27 27 H 1.08004 * 119.97597 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 16 5.8356 -2.6364 -0.0025 12 6 6.2320 -4.3533 -0.0029 13 6 5.2172 -5.3020 -0.0075 14 6 5.5307 -6.6469 -0.0025 15 6 6.8546 -7.0506 -0.0036 16 17 7.2442 -8.7424 -0.0047 17 6 7.8683 -6.1087 -0.0044 18 6 7.5611 -4.7613 -0.0045 19 17 8.8331 -3.5799 -0.0061 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8746 -0.6799 -0.8912 23 1 3.6580 -3.1505 -0.8908 24 1 3.6586 -3.1501 0.8891 25 1 4.1838 -4.9881 -0.0113 26 1 4.7420 -7.3847 -0.0024 27 1 8.9005 -6.4267 -0.0048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323075027.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -4.477138 kcal Electronic energy + Delta-G solvation = -13821.952108 eV Core-core repulsion = 11143.095436 eV Total energy + Delta-G solvation = -2678.856671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40129 -36.88250 -36.39537 -33.90581 -31.66782 -31.05075 -30.82141 -25.82770 -23.18078 -23.07212 -20.90698 -18.03995 -17.16719 -16.62756 -16.01859 -14.95426 -14.56725 -14.47128 -14.12652 -13.93334 -13.78542 -12.81357 -12.53906 -12.37466 -12.11109 -11.80946 -11.48730 -11.22724 -11.15839 -11.12420 -10.47362 -10.22556 -10.17783 -9.73393 -9.59611 -9.34223 -9.11763 -8.68424 -7.30980 -6.18972 -4.20294 0.71773 0.88283 1.57476 1.68336 2.20323 2.72710 3.18990 3.23651 3.31701 3.35090 4.33261 4.46395 4.73248 4.98077 5.05768 5.14391 5.44946 5.56262 5.63208 5.74986 5.82094 5.89407 6.26503 6.33991 6.93117 7.05867 7.54242 8.32514 8.81508 9.40792 10.93401 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.004171 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.394038 B = 6710.695329 C = 7701.642735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.086 4.086 11 S -0.100 6.100 12 C -0.066 4.066 13 C -0.114 4.114 14 C -0.082 4.082 15 C -0.043 4.043 16 Cl -0.066 7.066 17 C -0.084 4.084 18 C -0.021 4.021 19 Cl -0.046 7.046 20 H 0.266 0.734 21 H 0.028 0.972 22 H 0.024 0.976 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.663 -13.320 0.009 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.093 0.907 9 C -0.036 4.036 10 C -0.234 4.234 11 S 0.150 5.850 12 C -0.181 4.181 13 C -0.139 4.139 14 C -0.103 4.103 15 C -0.073 4.073 16 Cl -0.037 7.037 17 C -0.105 4.105 18 C -0.055 4.055 19 Cl -0.017 7.017 20 H 0.076 0.924 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.166 0.834 26 H 0.159 0.841 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.319 -12.126 0.010 20.331 hybrid contribution -0.360 -0.332 -0.019 0.490 sum 15.959 -12.457 -0.009 20.245 Atomic orbital electron populations 1.69889 1.06255 1.27248 1.50001 1.24957 0.94762 0.99179 0.94122 0.86805 0.80472 0.83484 0.78821 1.20002 1.21072 1.18792 1.20884 0.88108 0.94865 1.52423 0.90672 1.19376 0.97569 0.88871 0.97803 1.23970 0.88845 1.05536 1.05018 1.85932 1.11321 0.98555 1.89146 1.22048 0.94200 1.00017 1.01850 1.21290 0.99402 0.91730 1.01437 1.21057 0.94752 0.96188 0.98300 1.20636 0.94097 0.85058 1.07545 1.98370 1.94497 1.13821 1.97043 1.20748 0.99799 0.89745 1.00216 1.20195 0.88197 0.89908 1.07224 1.98382 1.49649 1.56946 1.96687 0.92404 0.95347 0.95784 0.89680 0.89648 0.83443 0.84100 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.96 55.43 0.77 -25.81 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 15 7 C -0.52 -14.09 9.66 -34.44 -0.33 -14.42 15 8 H 0.08 2.15 7.99 -52.48 -0.42 1.73 15 9 C 0.00 0.07 4.05 -27.89 -0.11 -0.04 15 10 C -0.09 -1.57 4.27 37.15 0.16 -1.41 15 11 S -0.10 -1.64 20.83 -107.50 -2.24 -3.88 15 12 C -0.07 -0.95 6.11 -39.03 -0.24 -1.19 15 13 C -0.11 -1.46 9.36 -39.38 -0.37 -1.83 15 14 C -0.08 -0.91 9.82 -39.57 -0.39 -1.30 15 15 C -0.04 -0.47 6.32 -39.47 -0.25 -0.72 15 16 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.14 15 17 C -0.08 -0.95 9.60 -39.55 -0.38 -1.33 15 18 C -0.02 -0.27 6.34 -39.30 -0.25 -0.52 15 19 Cl -0.05 -0.58 27.83 -51.86 -1.44 -2.03 15 20 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 21 H 0.03 0.65 7.20 -51.93 -0.37 0.28 15 22 H 0.02 0.54 7.57 -51.93 -0.39 0.15 15 23 H 0.08 1.49 7.74 -51.92 -0.40 1.09 15 24 H 0.08 1.50 7.76 -51.93 -0.40 1.10 15 25 H 0.15 1.84 5.88 -52.49 -0.31 1.54 15 26 H 0.14 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.14 1.33 8.06 -52.48 -0.42 0.91 15 LS Contribution 279.36 15.07 4.21 4.21 Total: -1.00 -28.19 279.36 -9.44 -37.63 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -2.31 Total: -3.45 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.26 Total: -20.82 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.24 Total: -3.88 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -2.94 Total: -4.17 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.19 -9.44 -37.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323075027.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.156 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds