Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86794 * 119.99963 * 2 1 4 4 H 1.48494 * 109.47419 * 264.99967 * 3 2 1 5 5 H 1.48501 * 109.47472 * 25.00518 * 3 2 1 6 6 H 1.48502 * 109.46798 * 145.00072 * 3 2 1 7 7 C 1.40126 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99587 * 185.04878 * 7 2 1 9 9 C 1.46192 * 120.00321 * 5.04185 * 7 2 1 10 10 O 1.21718 * 119.99862 * 354.95724 * 9 7 2 11 11 N 1.34770 * 120.00200 * 175.23456 * 9 7 2 12 12 C 1.38829 * 120.00146 * 184.92163 * 11 9 7 13 13 C 1.40227 * 119.22228 * 185.19877 * 12 11 9 14 14 C 1.36255 * 119.86986 * 179.73951 * 13 12 11 15 15 C 1.40982 * 118.28366 * 0.54237 * 14 13 12 16 16 C 1.40345 * 121.23903 * 179.68088 * 15 14 13 17 17 C 1.36186 * 119.66270 * 180.02562 * 16 15 14 18 18 C 1.39434 * 120.83766 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.49240 * 180.02562 * 18 17 16 20 20 C 1.36237 * 121.01176 * 359.97039 * 18 17 16 21 21 C 1.40559 * 119.75081 * 0.04755 * 20 18 17 22 22 N 1.31730 * 119.22740 * 5.47407 * 12 11 9 23 23 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99967 * 4.91988 * 11 9 7 25 25 H 1.07995 * 120.06191 * 0.02562 * 13 12 11 26 26 H 1.08004 * 120.85278 * 180.27421 * 14 13 12 27 27 H 1.08000 * 120.16992 * 0.02562 * 16 15 14 28 28 H 1.07999 * 119.58190 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.12279 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.5936 1.9854 -1.3947 5 1 1.3891 2.6809 0.5918 6 1 3.4811 1.4729 0.8031 7 6 2.0070 -1.2136 -0.0005 8 1 3.0838 -1.2154 0.0818 9 6 1.2802 -2.4771 -0.1124 10 8 0.0631 -2.4811 -0.1125 11 7 1.9579 -3.6380 -0.2096 12 6 1.2720 -4.8268 -0.4184 13 6 1.9805 -6.0369 -0.4075 14 6 1.3197 -7.2119 -0.6056 15 6 -0.0716 -7.1664 -0.8292 16 6 -0.8124 -8.3384 -1.0470 17 6 -2.1550 -8.2571 -1.2602 18 6 -2.8045 -7.0233 -1.2655 19 17 -4.5175 -6.9603 -1.5402 20 6 -2.1156 -5.8665 -1.0574 21 6 -0.7285 -5.9112 -0.8344 22 7 -0.0281 -4.7911 -0.6275 23 1 -0.4850 0.8400 0.0004 24 1 2.9250 -3.6429 -0.1338 25 1 3.0470 -6.0379 -0.2377 26 1 1.8488 -8.1534 -0.5960 27 1 -0.3203 -9.2997 -1.0455 28 1 -2.7238 -9.1597 -1.4280 29 1 -2.6332 -4.9187 -1.0642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335921212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = 20.036575 kcal Electronic energy + Delta-G solvation = -17842.740897 eV Core-core repulsion = 14756.919950 eV Total energy + Delta-G solvation = -3085.820947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50107 -38.19528 -36.77025 -35.70265 -33.26879 -33.04963 -32.38445 -29.72254 -29.19766 -26.50661 -23.86038 -23.04287 -21.95838 -20.15443 -18.58972 -17.32582 -16.69304 -16.53651 -15.43402 -14.98884 -14.45868 -14.37840 -14.09764 -13.95673 -13.30271 -13.17602 -12.98258 -12.54217 -12.18335 -11.70976 -11.53153 -11.31712 -11.21009 -10.84167 -10.83955 -10.64979 -10.35394 -10.15539 -9.32791 -8.93863 -8.87513 -8.12277 -7.54469 -7.28628 -6.32795 -4.81547 0.68327 1.13210 2.22847 2.29789 3.05609 3.13499 3.14921 3.16744 3.89284 4.19805 4.35054 4.63230 4.69377 4.94991 5.02943 5.17359 5.26855 5.28872 5.57653 5.68726 5.89692 6.04149 6.10469 6.18264 6.39049 6.50648 6.68982 6.92545 7.28036 7.43250 7.82017 8.05718 8.55634 8.84731 9.22662 10.41579 10.58462 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.004572 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.746790 B = 6122.253198 C = 7243.436499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.528 3.472 10 O -0.506 6.506 11 N -0.666 5.666 12 C 0.412 3.588 13 C -0.204 4.204 14 C -0.039 4.039 15 C -0.157 4.157 16 C -0.066 4.066 17 C -0.144 4.144 18 C -0.013 4.013 19 Cl -0.078 7.078 20 C -0.087 4.087 21 C 0.182 3.818 22 N -0.472 5.472 23 H 0.273 0.727 24 H 0.400 0.600 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -14.473 -1.977 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.332 3.668 10 O -0.380 6.380 11 N -0.309 5.309 12 C 0.165 3.835 13 C -0.227 4.227 14 C -0.065 4.065 15 C -0.161 4.161 16 C -0.085 4.085 17 C -0.164 4.164 18 C -0.042 4.042 19 Cl -0.049 7.049 20 C -0.107 4.107 21 C 0.057 3.943 22 N -0.190 5.190 23 H 0.084 0.916 24 H 0.234 0.766 25 H 0.152 0.848 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.364 -13.380 -1.992 13.532 hybrid contribution 1.313 0.018 0.025 1.314 sum 0.949 -13.362 -1.968 13.539 Atomic orbital electron populations 1.69985 1.07124 1.27900 1.33526 1.25725 0.94707 1.00465 0.92674 0.86286 0.79966 0.80850 0.79116 1.19519 1.20346 1.18869 1.20816 0.94037 0.88955 1.53768 0.91014 1.18598 0.87964 0.81692 0.78576 1.90751 1.12947 1.84359 1.49977 1.44753 1.10126 1.05361 1.70696 1.19063 0.88756 0.86771 0.88914 1.21479 1.01234 0.92314 1.07674 1.21108 0.92576 0.98049 0.94721 1.18812 0.94774 0.94602 1.07921 1.20762 0.93211 0.97094 0.97414 1.20520 0.94832 0.95999 1.05011 1.20464 0.84644 0.94873 1.04195 1.98354 1.12861 1.98862 1.94818 1.20685 0.92316 0.98085 0.99662 1.18661 0.93389 0.87758 0.94535 1.68453 1.05818 1.27057 1.17650 0.91641 0.76554 0.84788 0.84587 0.85175 0.85329 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.10 11.84 55.55 0.66 -21.44 15 2 C 0.09 2.30 5.50 -17.35 -0.10 2.21 15 3 Si 0.91 19.41 29.56 -169.99 -5.03 14.39 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.54 -14.55 9.53 -35.68 -0.34 -14.89 15 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 15 9 C 0.53 14.63 7.68 -13.07 -0.10 14.53 15 10 O -0.51 -16.10 13.29 5.17 0.07 -16.03 15 11 N -0.67 -14.58 5.36 -12.72 -0.07 -14.65 15 12 C 0.41 8.58 7.40 -155.34 -1.15 7.43 15 13 C -0.20 -3.10 9.84 -39.55 -0.39 -3.49 15 14 C -0.04 -0.53 9.88 -39.26 -0.39 -0.92 15 15 C -0.16 -2.47 5.74 -106.75 -0.61 -3.08 15 16 C -0.07 -0.83 9.77 -39.53 -0.39 -1.21 15 17 C -0.14 -1.85 9.73 -39.87 -0.39 -2.24 15 18 C -0.01 -0.20 6.27 -39.86 -0.25 -0.45 15 19 Cl -0.08 -1.07 28.91 -51.86 -1.50 -2.56 15 20 C -0.09 -1.61 9.72 -39.43 -0.38 -1.99 15 21 C 0.18 3.62 6.60 -84.86 -0.56 3.06 15 22 N -0.47 -11.12 7.83 -10.17 -0.08 -11.20 15 23 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 24 H 0.40 7.01 8.66 -40.82 -0.35 6.65 15 25 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 26 H 0.14 1.25 8.06 -52.48 -0.42 0.83 15 27 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 29 H 0.14 2.85 8.06 -52.49 -0.42 2.42 15 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -34.35 280.89 -8.77 -43.13 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -2.01 Total: 5.18 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -5.04 Total: -1.04 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.51 Total: -47.28 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.07 Total: -16.03 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.35 -8.77 -43.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335921212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.162 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds