Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86794 * 119.99963 * 2 1 4 4 H 1.48494 * 109.47419 * 264.99967 * 3 2 1 5 5 H 1.48501 * 109.47472 * 25.00518 * 3 2 1 6 6 H 1.48502 * 109.46798 * 145.00072 * 3 2 1 7 7 C 1.40126 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99587 * 185.04878 * 7 2 1 9 9 C 1.46192 * 120.00321 * 5.04185 * 7 2 1 10 10 O 1.21718 * 119.99862 * 354.95724 * 9 7 2 11 11 N 1.34770 * 120.00200 * 175.23456 * 9 7 2 12 12 C 1.38829 * 120.00146 * 184.92163 * 11 9 7 13 13 C 1.40227 * 119.22228 * 185.19877 * 12 11 9 14 14 C 1.36255 * 119.86986 * 179.73951 * 13 12 11 15 15 C 1.40982 * 118.28366 * 0.54237 * 14 13 12 16 16 C 1.40345 * 121.23903 * 179.68088 * 15 14 13 17 17 C 1.36186 * 119.66270 * 180.02562 * 16 15 14 18 18 C 1.39434 * 120.83766 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.49240 * 180.02562 * 18 17 16 20 20 C 1.36237 * 121.01176 * 359.97039 * 18 17 16 21 21 C 1.40559 * 119.75081 * 0.04755 * 20 18 17 22 22 N 1.31730 * 119.22740 * 5.47407 * 12 11 9 23 23 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99967 * 4.91988 * 11 9 7 25 25 H 1.07995 * 120.06191 * 0.02562 * 13 12 11 26 26 H 1.08004 * 120.85278 * 180.27421 * 14 13 12 27 27 H 1.08000 * 120.16992 * 0.02562 * 16 15 14 28 28 H 1.07999 * 119.58190 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.12279 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.5936 1.9854 -1.3947 5 1 1.3891 2.6809 0.5918 6 1 3.4811 1.4729 0.8031 7 6 2.0070 -1.2136 -0.0005 8 1 3.0838 -1.2154 0.0818 9 6 1.2802 -2.4771 -0.1124 10 8 0.0631 -2.4811 -0.1125 11 7 1.9579 -3.6380 -0.2096 12 6 1.2720 -4.8268 -0.4184 13 6 1.9805 -6.0369 -0.4075 14 6 1.3197 -7.2119 -0.6056 15 6 -0.0716 -7.1664 -0.8292 16 6 -0.8124 -8.3384 -1.0470 17 6 -2.1550 -8.2571 -1.2602 18 6 -2.8045 -7.0233 -1.2655 19 17 -4.5175 -6.9603 -1.5402 20 6 -2.1156 -5.8665 -1.0574 21 6 -0.7285 -5.9112 -0.8344 22 7 -0.0281 -4.7911 -0.6275 23 1 -0.4850 0.8400 0.0004 24 1 2.9250 -3.6429 -0.1338 25 1 3.0470 -6.0379 -0.2377 26 1 1.8488 -8.1534 -0.5960 27 1 -0.3203 -9.2997 -1.0455 28 1 -2.7238 -9.1597 -1.4280 29 1 -2.6332 -4.9187 -1.0642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335921212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = -3.721299 kcal Electronic energy + Delta-G solvation = -17843.771116 eV Core-core repulsion = 14756.919950 eV Total energy + Delta-G solvation = -3086.851166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.82801 -39.81989 -38.19612 -37.07616 -35.01933 -34.44062 -34.28841 -30.95301 -30.62374 -28.45855 -25.25280 -24.39284 -23.20595 -21.91384 -20.11126 -18.87287 -18.13737 -17.93063 -17.34830 -16.35369 -15.91815 -15.89122 -15.49244 -15.29711 -14.72400 -14.52952 -14.39976 -14.09957 -13.69688 -13.17983 -12.97276 -12.84556 -12.69036 -12.58655 -12.27708 -12.04364 -11.99359 -11.40455 -11.00698 -10.69329 -10.50586 -9.49351 -9.33111 -8.82845 -8.33608 -6.93499 -0.50359 -0.14674 1.02837 1.08991 1.38898 1.41019 1.56094 1.87259 2.18659 2.48203 2.62762 3.16926 3.54410 3.66073 3.73522 3.96858 3.98763 4.07259 4.24122 4.43002 4.75738 4.92438 4.92701 4.96773 5.20274 5.25729 5.33834 5.49952 5.67791 5.77768 6.07178 6.20699 6.77655 6.96685 7.57815 8.42816 8.59883 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.004572 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.746790 B = 6122.253198 C = 7243.436499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.025 3.975 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.565 4.565 8 H 0.098 0.902 9 C 0.515 3.485 10 O -0.564 6.564 11 N -0.666 5.666 12 C 0.381 3.619 13 C -0.203 4.203 14 C -0.015 4.015 15 C -0.161 4.161 16 C -0.042 4.042 17 C -0.141 4.141 18 C -0.002 4.002 19 Cl -0.068 7.068 20 C -0.132 4.132 21 C 0.143 3.857 22 N -0.544 5.544 23 H 0.276 0.724 24 H 0.419 0.581 25 H 0.176 0.824 26 H 0.200 0.800 27 H 0.189 0.811 28 H 0.168 0.832 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -17.886 -2.184 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.601 4.601 8 H 0.116 0.884 9 C 0.319 3.681 10 O -0.444 6.444 11 N -0.312 5.312 12 C 0.135 3.865 13 C -0.226 4.226 14 C -0.040 4.040 15 C -0.165 4.165 16 C -0.060 4.060 17 C -0.160 4.160 18 C -0.030 4.030 19 Cl -0.039 7.039 20 C -0.152 4.152 21 C 0.019 3.981 22 N -0.263 5.263 23 H 0.086 0.914 24 H 0.256 0.744 25 H 0.194 0.806 26 H 0.217 0.783 27 H 0.206 0.794 28 H 0.186 0.814 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.160 -16.876 -2.208 17.156 hybrid contribution 0.408 0.827 0.050 0.923 sum 2.568 -16.049 -2.159 16.396 Atomic orbital electron populations 1.70188 1.09761 1.29271 1.35435 1.27071 0.95521 1.05216 0.91211 0.84938 0.78652 0.74480 0.79668 1.18570 1.20078 1.16677 1.21421 0.95406 0.89415 1.53868 0.88407 1.18979 0.87586 0.83697 0.77803 1.90707 1.15333 1.85983 1.52368 1.44106 1.10816 1.04896 1.71382 1.19504 0.88749 0.87978 0.90270 1.21764 1.03031 0.90415 1.07390 1.21792 0.91353 0.99712 0.91125 1.19216 0.96406 0.93854 1.07030 1.21367 0.92757 0.97948 0.93969 1.21012 0.95559 0.95802 1.03596 1.20690 0.85112 0.94969 1.02238 1.98356 1.12030 1.98890 1.94600 1.20539 0.92833 0.97985 1.03871 1.18944 0.93722 0.88947 0.96445 1.68161 1.08061 1.30405 1.19627 0.91416 0.74358 0.80614 0.78282 0.79381 0.81405 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.72 11.84 21.85 0.26 -50.46 15 2 C 0.03 1.42 5.50 85.33 0.47 1.89 15 3 Si 1.00 40.54 29.56 68.60 2.03 42.56 15 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 15 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 15 6 H -0.24 -8.94 7.11 99.48 0.71 -8.23 15 7 C -0.57 -31.57 9.53 24.80 0.24 -31.33 15 8 H 0.10 4.72 7.85 -2.91 -0.02 4.70 15 9 C 0.52 30.40 7.68 86.31 0.66 31.06 15 10 O -0.56 -39.09 13.29 -4.41 -0.06 -39.15 15 11 N -0.67 -30.44 5.36 -312.38 -1.67 -32.11 15 12 C 0.38 16.39 7.40 133.59 0.99 17.38 15 13 C -0.20 -5.70 9.84 22.29 0.22 -5.48 15 14 C -0.01 -0.33 9.88 22.48 0.22 -0.11 15 15 C -0.16 -4.65 5.74 -21.25 -0.12 -4.77 15 16 C -0.04 -0.83 9.77 22.30 0.22 -0.62 15 17 C -0.14 -3.08 9.73 22.08 0.21 -2.87 15 18 C 0.00 -0.05 6.27 22.09 0.14 0.09 15 19 Cl -0.07 -1.85 28.91 -2.72 -0.08 -1.93 15 20 C -0.13 -5.25 9.72 22.37 0.22 -5.03 15 21 C 0.14 5.94 6.60 40.27 0.27 6.21 15 22 N -0.54 -27.55 7.83 -186.09 -1.46 -29.01 15 23 H 0.28 15.56 8.29 -92.71 -0.77 14.79 15 24 H 0.42 14.90 8.66 -92.71 -0.80 14.10 15 25 H 0.18 3.30 8.06 -2.91 -0.02 3.28 15 26 H 0.20 1.97 8.06 -2.91 -0.02 1.95 15 27 H 0.19 1.66 8.06 -2.91 -0.02 1.63 15 28 H 0.17 2.42 8.06 -2.91 -0.02 2.40 15 29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 15 Total: -1.00 -86.97 280.89 3.16 -83.81 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.41 Total: 19.88 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 3.73 Total: 6.40 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -2.87 Total: -111.58 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.06 Total: -39.15 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -86.97 3.16 -83.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335921212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.090 kcal (2) G-P(sol) polarization free energy of solvation -86.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds