Wall clock time and date at job start Mon Mar 30 2020 01:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47037 * 2 1 4 4 C 1.53001 * 109.46847 * 120.00493 * 2 1 3 5 5 C 1.53000 * 109.46886 * 294.99397 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72838 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00280 * 6 5 4 12 12 C 1.53000 * 109.46668 * 240.00135 * 2 1 3 13 13 N 1.46898 * 109.47200 * 65.00419 * 12 2 1 14 14 C 1.46901 * 111.00379 * 66.04029 * 13 12 2 15 15 C 1.46907 * 111.00001 * 189.99818 * 13 12 2 16 16 H 1.09000 * 109.47142 * 299.99843 * 15 13 12 17 17 C 1.52995 * 109.47008 * 59.99843 * 15 13 12 18 18 C 1.50702 * 109.47064 * 179.97438 * 15 13 12 19 19 H 1.08000 * 119.99866 * 359.97438 * 18 15 13 20 20 C 1.37876 * 119.99843 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00190 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99765 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.46787 * 90.00098 * 22 20 18 24 24 H 1.48500 * 109.46527 * 209.99832 * 22 20 18 25 25 H 1.48499 * 109.46982 * 329.99697 * 22 20 18 26 26 H 1.09003 * 109.46480 * 299.99905 * 1 2 3 27 27 H 1.09004 * 109.46932 * 59.99359 * 1 2 3 28 28 H 1.08994 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 174.99742 * 4 2 1 30 30 H 1.08992 * 109.47514 * 54.99831 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 35 35 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 36 36 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 38 38 H 1.09001 * 109.46867 * 184.99750 * 12 2 1 39 39 H 1.09003 * 109.47171 * 305.00209 * 12 2 1 40 40 H 1.09005 * 109.46777 * 59.99898 * 14 13 12 41 41 H 1.09002 * 109.47144 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47013 * 300.00460 * 14 13 12 43 43 H 1.09002 * 109.47683 * 60.00006 * 17 15 13 44 44 H 1.09005 * 109.46770 * 180.02562 * 17 15 13 45 45 H 1.09001 * 109.47042 * 300.00141 * 17 15 13 46 46 H 0.97001 * 120.00487 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1381 -0.6414 3.7257 7 6 1.3437 -1.5823 4.3538 8 6 1.8068 -2.2372 5.4796 9 6 3.0602 -1.9437 5.9834 10 6 3.8525 -0.9991 5.3584 11 6 3.3915 -0.3478 4.2295 12 6 2.0400 -0.7212 -1.2493 13 7 1.6514 0.0375 -2.4456 14 6 2.3341 1.3375 -2.4894 15 6 1.9124 -0.7357 -3.6672 16 1 2.9756 -0.9673 -3.7304 17 6 1.1084 -2.0367 -3.6288 18 6 1.5016 0.0729 -4.8708 19 1 1.0876 1.0619 -4.7412 20 6 1.6533 -0.4505 -6.1373 21 7 2.1569 -1.6551 -6.2951 22 14 1.1434 0.5514 -7.6292 23 1 2.2949 1.3642 -8.0966 24 1 0.7101 -0.3638 -8.7154 25 1 0.0198 1.4500 -7.2614 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1263 -0.7996 1.2055 30 1 1.6054 -1.7198 1.2951 31 1 2.0700 1.0674 2.4494 32 1 0.5490 0.1471 2.5390 33 1 0.3625 -1.8081 3.9630 34 1 1.1876 -2.9750 5.9681 35 1 3.4202 -2.4522 6.8656 36 1 4.8315 -0.7694 5.7522 37 1 4.0102 0.3908 3.7416 38 1 3.1263 -0.7994 -1.2057 39 1 1.6053 -1.7198 -1.2952 40 1 3.4126 1.1809 -2.5099 41 1 2.0287 1.8783 -3.3852 42 1 2.0679 1.9176 -1.6058 43 1 0.0451 -1.8052 -3.5656 44 1 1.3024 -2.6106 -4.5350 45 1 1.4051 -2.6216 -2.7582 46 1 2.2633 -2.0235 -7.1860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342761124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:51 Heat of formation + Delta-G solvation = 8.087605 kcal Electronic energy + Delta-G solvation = -21041.990342 eV Core-core repulsion = 18123.700373 eV Total energy + Delta-G solvation = -2918.289969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.47801 -37.77816 -35.44558 -32.99586 -31.83439 -31.02210 -29.12281 -28.15098 -26.73827 -25.00402 -24.16615 -22.83543 -22.69788 -20.97912 -19.73241 -18.98789 -16.90593 -16.26327 -15.59604 -15.36888 -15.16067 -14.57113 -14.23778 -13.92053 -13.80456 -13.51311 -13.21291 -13.01863 -12.83806 -12.35074 -12.18906 -12.13114 -11.73722 -11.41716 -11.20073 -11.12178 -11.06852 -10.92649 -10.85876 -10.71753 -10.40058 -10.29926 -10.04569 -10.04064 -9.96458 -9.59316 -9.06251 -8.83161 -8.73580 -8.39461 -7.07908 -5.98289 -4.02530 1.23071 1.25855 3.31624 3.38239 3.42300 3.64852 4.42503 4.63772 4.70676 4.84390 4.96301 5.05369 5.08971 5.25110 5.33348 5.36634 5.38527 5.51475 5.57976 5.74502 5.83307 5.89297 5.93338 6.01263 6.07846 6.20523 6.23546 6.31263 6.34609 6.36465 6.38704 6.44105 6.52669 6.56892 6.72734 6.83771 6.85710 6.88903 6.92972 7.10286 7.21861 7.57825 7.78941 7.86362 8.26882 8.37786 8.66853 9.04503 9.62357 11.08586 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041544 B = 0.002888 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.816157 B = 9693.374302 C = 9784.070976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.106 4.106 5 C -0.083 4.083 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.131 4.131 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.056 3.944 13 N -0.534 5.534 14 C 0.036 3.964 15 C 0.212 3.788 16 H -0.005 1.005 17 C -0.132 4.132 18 C -0.502 4.502 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.016 0.984 39 H 0.072 0.928 40 H 0.007 0.993 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.083 0.917 45 H 0.008 0.992 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 1.065 21.377 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.074 4.074 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.149 4.149 10 C -0.138 4.138 11 C -0.138 4.138 12 C -0.073 4.073 13 N -0.259 5.259 14 C -0.113 4.113 15 C 0.106 3.894 16 H 0.013 0.987 17 C -0.190 4.190 18 C -0.540 4.540 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.035 0.965 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.102 0.898 45 H 0.027 0.973 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.016 1.017 21.231 21.255 hybrid contribution 0.755 0.213 -0.874 1.174 sum 0.739 1.230 20.357 20.407 Atomic orbital electron populations 1.21724 0.94862 1.01381 1.01298 1.21176 0.96617 0.99447 0.93358 0.91499 1.21597 1.00729 0.99122 0.93002 1.20716 1.01423 0.98471 0.91368 1.20048 0.94279 0.96623 0.96456 1.21099 0.99970 0.96658 0.95940 1.21146 0.96206 0.99743 0.96663 1.21111 0.94876 0.98652 1.00286 1.21139 0.99660 0.96859 0.96116 1.21097 0.95773 1.00355 0.96528 1.22159 0.96578 0.98055 0.90513 1.62091 1.57212 1.03844 1.02734 1.22243 0.95077 0.92807 1.01154 1.19221 0.93727 0.90897 0.85597 0.98698 1.21840 0.98987 0.98222 0.99942 1.21173 1.41145 1.01765 0.89933 0.91884 1.24939 0.95369 0.95061 0.98955 1.69896 1.45534 1.15562 1.22370 0.86539 0.78810 0.79898 0.82408 1.20849 1.21292 1.19862 0.94077 0.91149 0.93422 0.92269 0.91942 0.91153 0.90612 0.86066 0.86274 0.86416 0.86302 0.86143 0.96549 0.90933 0.97445 0.90667 0.93762 0.94723 0.89792 0.97346 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.84 37.16 0.33 -1.60 16 2 C -0.09 -1.26 2.31 -90.62 -0.21 -1.47 16 3 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 4 C -0.11 -1.31 4.66 -26.73 -0.12 -1.44 16 5 C -0.08 -0.88 5.10 -27.88 -0.14 -1.02 16 6 C -0.07 -0.80 5.13 -104.62 -0.54 -1.33 16 7 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 8 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 9 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 10 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 11 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 12 C 0.06 1.02 4.16 -3.83 -0.02 1.00 16 13 N -0.53 -11.50 4.08 -236.28 -0.96 -12.47 16 14 C 0.04 0.71 9.05 60.07 0.54 1.26 16 15 C 0.21 5.41 2.06 -68.86 -0.14 5.27 16 16 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 17 C -0.13 -3.27 8.76 37.16 0.33 -2.94 16 18 C -0.50 -13.81 7.88 -34.44 -0.27 -14.09 16 19 H 0.06 1.73 6.41 -52.49 -0.34 1.39 16 20 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 21 N -0.89 -25.75 11.32 55.43 0.63 -25.13 16 22 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.04 0.49 6.56 -51.93 -0.34 0.15 16 27 H 0.07 1.16 7.75 -51.93 -0.40 0.76 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.08 0.77 6.51 -51.93 -0.34 0.43 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.07 1.38 5.83 -51.93 -0.30 1.07 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.07 1.60 6.10 -51.93 -0.32 1.28 16 42 H 0.04 0.75 6.37 -51.93 -0.33 0.42 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 45 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -28.95 356.85 -10.24 -39.19 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.96 Total: -0.71 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.30 Total: -22.69 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.34 Total: -37.59 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.95 -10.24 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342761124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.275 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds