Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47037 * 2 1 4 4 C 1.53001 * 109.46847 * 120.00493 * 2 1 3 5 5 C 1.53000 * 109.46886 * 294.99397 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72838 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00280 * 6 5 4 12 12 C 1.53000 * 109.46668 * 240.00135 * 2 1 3 13 13 N 1.46898 * 109.47200 * 65.00419 * 12 2 1 14 14 C 1.46901 * 111.00379 * 66.04029 * 13 12 2 15 15 C 1.46907 * 111.00001 * 189.99818 * 13 12 2 16 16 H 1.09000 * 109.47142 * 299.99843 * 15 13 12 17 17 C 1.52995 * 109.47008 * 59.99843 * 15 13 12 18 18 C 1.50702 * 109.47064 * 179.97438 * 15 13 12 19 19 H 1.08000 * 119.99866 * 359.97438 * 18 15 13 20 20 C 1.37876 * 119.99843 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00190 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99765 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.46787 * 90.00098 * 22 20 18 24 24 H 1.48500 * 109.46527 * 209.99832 * 22 20 18 25 25 H 1.48499 * 109.46982 * 329.99697 * 22 20 18 26 26 H 1.09003 * 109.46480 * 299.99905 * 1 2 3 27 27 H 1.09004 * 109.46932 * 59.99359 * 1 2 3 28 28 H 1.08994 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 174.99742 * 4 2 1 30 30 H 1.08992 * 109.47514 * 54.99831 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 35 35 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 36 36 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 38 38 H 1.09001 * 109.46867 * 184.99750 * 12 2 1 39 39 H 1.09003 * 109.47171 * 305.00209 * 12 2 1 40 40 H 1.09005 * 109.46777 * 59.99898 * 14 13 12 41 41 H 1.09002 * 109.47144 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47013 * 300.00460 * 14 13 12 43 43 H 1.09002 * 109.47683 * 60.00006 * 17 15 13 44 44 H 1.09005 * 109.46770 * 180.02562 * 17 15 13 45 45 H 1.09001 * 109.47042 * 300.00141 * 17 15 13 46 46 H 0.97001 * 120.00487 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1381 -0.6414 3.7257 7 6 1.3437 -1.5823 4.3538 8 6 1.8068 -2.2372 5.4796 9 6 3.0602 -1.9437 5.9834 10 6 3.8525 -0.9991 5.3584 11 6 3.3915 -0.3478 4.2295 12 6 2.0400 -0.7212 -1.2493 13 7 1.6514 0.0375 -2.4456 14 6 2.3341 1.3375 -2.4894 15 6 1.9124 -0.7357 -3.6672 16 1 2.9756 -0.9673 -3.7304 17 6 1.1084 -2.0367 -3.6288 18 6 1.5016 0.0729 -4.8708 19 1 1.0876 1.0619 -4.7412 20 6 1.6533 -0.4505 -6.1373 21 7 2.1569 -1.6551 -6.2951 22 14 1.1434 0.5514 -7.6292 23 1 2.2949 1.3642 -8.0966 24 1 0.7101 -0.3638 -8.7154 25 1 0.0198 1.4500 -7.2614 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1263 -0.7996 1.2055 30 1 1.6054 -1.7198 1.2951 31 1 2.0700 1.0674 2.4494 32 1 0.5490 0.1471 2.5390 33 1 0.3625 -1.8081 3.9630 34 1 1.1876 -2.9750 5.9681 35 1 3.4202 -2.4522 6.8656 36 1 4.8315 -0.7694 5.7522 37 1 4.0102 0.3908 3.7416 38 1 3.1263 -0.7994 -1.2057 39 1 1.6053 -1.7198 -1.2952 40 1 3.4126 1.1809 -2.5099 41 1 2.0287 1.8783 -3.3852 42 1 2.0679 1.9176 -1.6058 43 1 0.0451 -1.8052 -3.5656 44 1 1.3024 -2.6106 -4.5350 45 1 1.4051 -2.6216 -2.7582 46 1 2.2633 -2.0235 -7.1860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342761124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = -5.424441 kcal Electronic energy + Delta-G solvation = -21042.576268 eV Core-core repulsion = 18123.700373 eV Total energy + Delta-G solvation = -2918.875895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23845 -39.28367 -36.80730 -34.71246 -33.07626 -31.71483 -31.01334 -29.20494 -28.26685 -26.72976 -25.66380 -24.22511 -23.40280 -21.97054 -21.17602 -20.50277 -18.36950 -17.58834 -17.07500 -16.43505 -16.14424 -16.00869 -15.69075 -15.37701 -15.17741 -14.51566 -14.25984 -14.16361 -14.08130 -13.84263 -13.64040 -13.31120 -12.96059 -12.87190 -12.75153 -12.64464 -12.58289 -12.25263 -12.09827 -12.06049 -11.96134 -11.93429 -11.81129 -11.37554 -11.32018 -11.10311 -10.81901 -10.50861 -9.77314 -9.51814 -8.87419 -8.10717 -6.22532 0.50680 0.54735 1.41927 1.43019 1.53842 2.42590 2.92157 3.17229 3.39800 3.89577 3.95809 4.01681 4.14823 4.21352 4.32534 4.41763 4.43540 4.56317 4.67092 4.69525 4.70864 4.74251 4.78028 4.85799 4.87400 4.96126 5.00744 5.04977 5.11111 5.16703 5.20006 5.24753 5.26442 5.30065 5.34079 5.50551 5.58029 5.62842 5.66716 5.67352 5.74395 5.81488 5.82529 6.18946 6.27007 6.43391 6.78799 6.93386 7.46769 8.95513 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041544 B = 0.002888 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.816157 B = 9693.374302 C = 9784.070976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.097 4.097 5 C -0.074 4.074 6 C -0.090 4.090 7 C -0.132 4.132 8 C -0.128 4.128 9 C -0.137 4.137 10 C -0.129 4.129 11 C -0.134 4.134 12 C 0.056 3.944 13 N -0.537 5.537 14 C 0.039 3.961 15 C 0.215 3.785 16 H -0.044 1.044 17 C -0.119 4.119 18 C -0.517 4.517 19 H 0.061 0.939 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.961 3.039 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.267 1.267 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.008 0.992 39 H 0.063 0.937 40 H 0.001 0.999 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.032 0.968 44 H 0.058 0.942 45 H 0.028 0.972 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 1.820 22.959 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.135 4.135 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.155 4.155 10 C -0.146 4.146 11 C -0.152 4.152 12 C -0.072 4.072 13 N -0.261 5.261 14 C -0.109 4.109 15 C 0.108 3.892 16 H -0.026 1.026 17 C -0.177 4.177 18 C -0.556 4.556 19 H 0.079 0.921 20 C -0.190 4.190 21 N -0.563 5.563 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.192 1.192 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.515 1.781 22.833 22.908 hybrid contribution 0.952 -0.055 -1.284 1.599 sum 0.438 1.726 21.549 21.623 Atomic orbital electron populations 1.21672 0.94340 1.01315 1.01458 1.21086 0.96886 0.99294 0.92254 0.91052 1.21477 1.00286 0.98989 0.92767 1.20619 1.01809 0.98339 0.90368 1.20121 0.94776 0.97277 0.96803 1.21314 1.00453 0.96804 0.96433 1.21449 0.96682 0.99957 0.96497 1.21449 0.94751 0.98443 1.00850 1.21435 1.00576 0.96738 0.95895 1.21307 0.95906 1.00872 0.97110 1.22244 0.96175 0.97901 0.90884 1.62057 1.57560 1.04258 1.02254 1.22238 0.94509 0.92180 1.01972 1.19035 0.91319 0.91590 0.87254 1.02649 1.21647 0.98609 0.97908 0.99567 1.21452 1.41165 1.01928 0.91017 0.92086 1.25746 0.95336 0.96075 1.01813 1.70029 1.46297 1.16944 1.23002 0.85512 0.78611 0.78465 0.78782 1.20244 1.20921 1.19193 0.91380 0.93458 0.93648 0.92747 0.92240 0.90585 0.89960 0.85302 0.84449 0.84333 0.84545 0.85514 0.97332 0.91819 0.98067 0.92331 0.90371 0.94918 0.92317 0.95351 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.84 71.98 0.64 -2.85 16 2 C -0.08 -2.10 2.31 -10.79 -0.02 -2.13 16 3 H 0.07 1.92 6.33 -2.39 -0.02 1.90 16 4 C -0.10 -2.25 4.66 30.59 0.14 -2.10 16 5 C -0.07 -1.42 5.10 29.85 0.15 -1.27 16 6 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 7 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 8 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 9 C -0.14 -2.20 10.05 22.27 0.22 -1.97 16 10 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 11 C -0.13 -2.55 9.70 22.27 0.22 -2.34 16 12 C 0.06 2.04 4.16 86.30 0.36 2.40 16 13 N -0.54 -23.19 4.08 -901.44 -3.68 -26.87 16 14 C 0.04 1.55 9.05 127.69 1.16 2.71 16 15 C 0.22 11.26 2.06 44.17 0.09 11.35 16 16 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 17 C -0.12 -6.01 8.76 71.98 0.63 -5.38 16 18 C -0.52 -28.90 7.88 25.60 0.20 -28.70 16 19 H 0.06 3.37 6.41 -2.91 -0.02 3.35 16 20 C 0.01 0.48 5.30 84.65 0.45 0.93 16 21 N -0.92 -54.13 11.32 21.45 0.24 -53.88 16 22 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H 0.07 1.45 6.56 -2.39 -0.02 1.43 16 27 H 0.05 1.49 7.75 -2.39 -0.02 1.47 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 32 H 0.08 1.46 6.51 -2.39 -0.02 1.45 16 33 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 39 H 0.06 2.41 5.83 -2.39 -0.01 2.39 16 40 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 41 H 0.06 2.49 6.10 -2.39 -0.01 2.47 16 42 H 0.08 2.53 6.37 -2.39 -0.02 2.51 16 43 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 45 H 0.03 1.26 6.20 -2.39 -0.01 1.25 16 46 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -62.42 356.85 4.31 -58.11 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.92 Total: 13.86 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 4.79 Total: -37.39 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -3.43 Total: -80.75 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.42 4.31 -58.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342761124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.686 kcal (2) G-P(sol) polarization free energy of solvation -62.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds