Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46890 * 2 1 4 4 C 1.52991 * 109.47506 * 240.00110 * 2 1 3 5 5 C 1.53001 * 109.47183 * 64.99943 * 4 2 1 6 6 C 1.50707 * 109.47404 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99755 * 269.72815 * 6 5 4 8 8 C 1.38230 * 119.99827 * 179.76281 * 7 6 5 9 9 C 1.38242 * 119.99728 * 0.50613 * 8 7 6 10 10 C 1.38231 * 120.00170 * 359.75019 * 9 8 7 11 11 C 1.38232 * 119.99984 * 89.99815 * 6 5 4 12 12 C 1.53004 * 109.46961 * 119.99833 * 2 1 3 13 13 N 1.46895 * 109.47035 * 295.00400 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47053 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99701 * 21 19 17 23 23 H 1.48496 * 109.47112 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46926 * 299.99492 * 21 19 17 25 25 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47563 * 300.00211 * 1 2 3 27 27 H 1.09007 * 109.46934 * 60.00197 * 1 2 3 28 28 H 1.08997 * 109.47346 * 184.99925 * 4 2 1 29 29 H 1.09004 * 109.47143 * 305.00335 * 4 2 1 30 30 H 1.09001 * 109.47449 * 300.00187 * 5 4 2 31 31 H 1.08997 * 109.47406 * 60.00108 * 5 4 2 32 32 H 1.07995 * 119.99995 * 359.97438 * 7 6 5 33 33 H 1.07997 * 120.00311 * 180.22760 * 8 7 6 34 34 H 1.07999 * 119.99670 * 179.71835 * 9 8 7 35 35 H 1.07998 * 120.00048 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.00149 * 0.02562 * 11 6 5 37 37 H 1.08996 * 109.46863 * 175.00242 * 12 2 1 38 38 H 1.09002 * 109.46661 * 55.00419 * 12 2 1 39 39 H 1.00902 * 111.00273 * 303.95364 * 13 12 2 40 40 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 41 41 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 42 42 H 1.09001 * 109.47142 * 300.00160 * 15 14 13 43 43 H 1.09004 * 109.47006 * 60.00213 * 15 14 13 44 44 H 1.09001 * 109.47372 * 300.00036 * 16 15 14 45 45 H 1.09004 * 109.47108 * 60.00292 * 16 15 14 46 46 H 0.97007 * 119.99539 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6353 0.0690 -2.4952 6 6 2.1372 -0.6417 -3.7258 7 6 3.3883 -0.3449 -4.2334 8 6 3.8506 -1.0002 -5.3592 9 6 3.0576 -1.9449 -5.9836 10 6 1.8045 -2.2379 -5.4791 11 6 1.3443 -1.5863 -4.3501 12 6 2.0400 -0.7212 1.2493 13 7 1.6512 0.0374 2.4456 14 6 2.1246 -0.6272 3.6673 15 6 1.7022 0.1909 4.8893 16 6 2.1946 -0.5016 6.1615 17 6 1.7780 0.3039 7.3652 18 1 1.2177 1.2180 7.2357 19 6 2.1122 -0.1263 8.6319 20 7 2.7941 -1.2397 8.7896 21 14 1.5953 0.8717 10.1239 22 1 0.1145 0.9774 10.1600 23 1 2.0733 0.1997 11.3588 24 1 2.1866 2.2313 10.0391 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7197 -1.2951 30 1 0.5490 0.1472 -2.5390 31 1 2.0699 1.0676 -2.4494 32 1 4.0058 0.3966 -3.7484 33 1 4.8295 -0.7710 -5.7537 34 1 3.4170 -2.4536 -6.8658 35 1 1.1848 -2.9756 -5.9671 36 1 0.3649 -1.8147 -3.9563 37 1 3.1262 -0.7994 1.2057 38 1 1.6053 -1.7198 1.2951 39 1 1.9880 0.9873 2.3967 40 1 1.6902 -1.6249 3.7298 41 1 3.2115 -0.7051 3.6406 42 1 2.1369 1.1885 4.8266 43 1 0.6153 0.2692 4.9161 44 1 1.7595 -1.4990 6.2240 45 1 3.2815 -0.5802 6.1350 46 1 3.0289 -1.5425 9.6808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344256987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -19.095200 kcal Electronic energy + Delta-G solvation = -19759.905159 eV Core-core repulsion = 16840.436455 eV Total energy + Delta-G solvation = -2919.468704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.64681 -37.65963 -35.47089 -33.54825 -32.41020 -31.17581 -30.70937 -28.34743 -26.82003 -25.35818 -23.53428 -22.85872 -22.06920 -21.10761 -20.44027 -19.67839 -17.06948 -16.27712 -15.82044 -15.55441 -15.49289 -14.96923 -14.55803 -14.42769 -14.12628 -13.72875 -13.55095 -13.40133 -13.22023 -12.65948 -12.38682 -12.28528 -11.98363 -11.84483 -11.57807 -11.41613 -11.39090 -11.16819 -10.81132 -10.75613 -10.68587 -10.61294 -10.53720 -10.41674 -9.65283 -9.30031 -9.21451 -9.04214 -8.92821 -8.31298 -8.09741 -5.96583 -3.98614 1.07045 1.10766 3.35769 3.39702 3.42560 3.48875 4.29180 4.48746 4.53034 4.60490 4.72060 4.77814 4.83011 4.85247 5.07923 5.16370 5.23748 5.31066 5.38974 5.41113 5.49151 5.59471 5.64644 5.71935 5.76830 5.79212 5.89231 5.91154 5.94192 6.02052 6.06734 6.18122 6.22278 6.30637 6.36345 6.36574 6.44908 6.72550 6.76019 6.81456 7.17633 7.39939 7.68513 7.72100 7.87511 8.04018 8.47372 9.08424 9.65039 11.14835 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.051181 B = 0.001980 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.949103 B =14135.870483 C =14306.881849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.083 4.083 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.118 4.118 12 C 0.062 3.938 13 N -0.690 5.690 14 C 0.059 3.941 15 C -0.107 4.107 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.336 0.664 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 0.262 -29.833 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.120 4.120 6 C -0.077 4.077 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.068 4.068 13 N -0.320 5.320 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.203 -0.147 -29.652 29.677 hybrid contribution 0.833 0.564 0.812 1.293 sum -0.369 0.417 -28.840 28.846 Atomic orbital electron populations 1.21773 0.94507 1.01719 1.01710 1.21151 0.96885 0.99357 0.93337 0.91409 1.21588 1.00898 0.99203 0.92830 1.20699 1.01493 0.98478 0.91314 1.19998 0.94395 0.96766 0.96560 1.21090 0.95746 1.00284 0.96596 1.21156 0.99712 0.96750 0.96095 1.21140 0.94802 0.98544 1.00244 1.21156 0.96221 0.99757 0.96574 1.21088 0.99923 0.96663 0.95970 1.21992 0.97074 0.97966 0.89732 1.60538 1.64292 1.05569 1.01623 1.22115 0.96742 0.98697 0.89374 1.21619 1.00699 0.98084 0.94066 1.19065 0.96232 0.95810 0.90480 1.21231 1.34929 1.08407 0.91178 0.92721 1.25039 0.95273 0.95154 0.99114 1.69962 1.39232 1.21872 1.22561 0.86646 0.78980 0.80226 0.82069 1.20231 1.21326 1.20285 0.93137 0.91256 0.93472 0.92011 0.91720 0.90563 0.91032 0.86138 0.86212 0.86312 0.86197 0.86083 0.95787 0.91283 0.84726 0.91597 0.95926 0.93714 0.92592 0.96602 0.96849 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.84 37.16 0.33 -1.08 16 2 C -0.09 -0.87 2.53 -90.62 -0.23 -1.10 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.93 4.66 -26.74 -0.12 -1.06 16 5 C -0.08 -0.65 5.10 -27.88 -0.14 -0.79 16 6 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 7 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 8 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 9 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 10 C -0.12 -0.92 10.05 -39.59 -0.40 -1.31 16 11 C -0.12 -0.98 9.70 -39.59 -0.38 -1.36 16 12 C 0.06 0.76 5.07 -3.82 -0.02 0.74 16 13 N -0.69 -10.14 5.96 -113.78 -0.68 -10.82 16 14 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 15 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 27 H 0.05 0.40 6.57 -51.92 -0.34 0.06 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.57 6.51 -51.93 -0.34 0.23 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.34 4.63 8.73 -39.29 -0.34 4.29 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -30.75 373.31 -11.31 -42.06 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.57 Total: -1.16 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -3.40 Total: -26.02 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.06 Total: -37.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.75 -11.31 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344256987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.966 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds