Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46890 * 2 1 4 4 C 1.52991 * 109.47506 * 240.00110 * 2 1 3 5 5 C 1.53001 * 109.47183 * 64.99943 * 4 2 1 6 6 C 1.50707 * 109.47404 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99755 * 269.72815 * 6 5 4 8 8 C 1.38230 * 119.99827 * 179.76281 * 7 6 5 9 9 C 1.38242 * 119.99728 * 0.50613 * 8 7 6 10 10 C 1.38231 * 120.00170 * 359.75019 * 9 8 7 11 11 C 1.38232 * 119.99984 * 89.99815 * 6 5 4 12 12 C 1.53004 * 109.46961 * 119.99833 * 2 1 3 13 13 N 1.46895 * 109.47035 * 295.00400 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47053 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99701 * 21 19 17 23 23 H 1.48496 * 109.47112 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46926 * 299.99492 * 21 19 17 25 25 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47563 * 300.00211 * 1 2 3 27 27 H 1.09007 * 109.46934 * 60.00197 * 1 2 3 28 28 H 1.08997 * 109.47346 * 184.99925 * 4 2 1 29 29 H 1.09004 * 109.47143 * 305.00335 * 4 2 1 30 30 H 1.09001 * 109.47449 * 300.00187 * 5 4 2 31 31 H 1.08997 * 109.47406 * 60.00108 * 5 4 2 32 32 H 1.07995 * 119.99995 * 359.97438 * 7 6 5 33 33 H 1.07997 * 120.00311 * 180.22760 * 8 7 6 34 34 H 1.07999 * 119.99670 * 179.71835 * 9 8 7 35 35 H 1.07998 * 120.00048 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.00149 * 0.02562 * 11 6 5 37 37 H 1.08996 * 109.46863 * 175.00242 * 12 2 1 38 38 H 1.09002 * 109.46661 * 55.00419 * 12 2 1 39 39 H 1.00902 * 111.00273 * 303.95364 * 13 12 2 40 40 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 41 41 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 42 42 H 1.09001 * 109.47142 * 300.00160 * 15 14 13 43 43 H 1.09004 * 109.47006 * 60.00213 * 15 14 13 44 44 H 1.09001 * 109.47372 * 300.00036 * 16 15 14 45 45 H 1.09004 * 109.47108 * 60.00292 * 16 15 14 46 46 H 0.97007 * 119.99539 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6353 0.0690 -2.4952 6 6 2.1372 -0.6417 -3.7258 7 6 3.3883 -0.3449 -4.2334 8 6 3.8506 -1.0002 -5.3592 9 6 3.0576 -1.9449 -5.9836 10 6 1.8045 -2.2379 -5.4791 11 6 1.3443 -1.5863 -4.3501 12 6 2.0400 -0.7212 1.2493 13 7 1.6512 0.0374 2.4456 14 6 2.1246 -0.6272 3.6673 15 6 1.7022 0.1909 4.8893 16 6 2.1946 -0.5016 6.1615 17 6 1.7780 0.3039 7.3652 18 1 1.2177 1.2180 7.2357 19 6 2.1122 -0.1263 8.6319 20 7 2.7941 -1.2397 8.7896 21 14 1.5953 0.8717 10.1239 22 1 0.1145 0.9774 10.1600 23 1 2.0733 0.1997 11.3588 24 1 2.1866 2.2313 10.0391 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7197 -1.2951 30 1 0.5490 0.1472 -2.5390 31 1 2.0699 1.0676 -2.4494 32 1 4.0058 0.3966 -3.7484 33 1 4.8295 -0.7710 -5.7537 34 1 3.4170 -2.4536 -6.8658 35 1 1.1848 -2.9756 -5.9671 36 1 0.3649 -1.8147 -3.9563 37 1 3.1262 -0.7994 1.2057 38 1 1.6053 -1.7198 1.2951 39 1 1.9880 0.9873 2.3967 40 1 1.6902 -1.6249 3.7298 41 1 3.2115 -0.7051 3.6406 42 1 2.1369 1.1885 4.8266 43 1 0.6153 0.2692 4.9161 44 1 1.7595 -1.4990 6.2240 45 1 3.2815 -0.5802 6.1350 46 1 3.0289 -1.5425 9.6808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344256987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = -34.240377 kcal Electronic energy + Delta-G solvation = -19760.561903 eV Core-core repulsion = 16840.436455 eV Total energy + Delta-G solvation = -2920.125448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22590 -38.65822 -36.76512 -35.24600 -33.65330 -32.22638 -31.73077 -29.20066 -28.28534 -26.59411 -24.77081 -23.49320 -23.42108 -22.11924 -21.65718 -20.75824 -18.47467 -17.62419 -16.89654 -16.57428 -16.37566 -16.18275 -15.79663 -15.48063 -15.42090 -14.76721 -14.39278 -14.23719 -14.14132 -13.89658 -13.71274 -13.36084 -13.28865 -13.07262 -12.86072 -12.65613 -12.47116 -12.35424 -12.25110 -12.07203 -11.86313 -11.58996 -11.53426 -11.49077 -11.34707 -11.33492 -11.00976 -10.55171 -9.78981 -9.53567 -9.32594 -8.20153 -6.31495 0.48985 0.53179 1.39967 1.43553 1.51490 2.41140 2.90118 3.12640 3.24463 3.86187 3.93290 3.96025 4.09786 4.19633 4.24675 4.31035 4.34207 4.40151 4.44109 4.64044 4.68162 4.70514 4.71958 4.75334 4.84553 4.85960 4.92062 5.00554 5.09399 5.14068 5.18312 5.21753 5.24209 5.24603 5.30312 5.50673 5.52982 5.59407 5.62760 5.66222 5.74646 5.79535 5.85390 6.08244 6.17374 6.27108 6.52465 6.85252 7.37629 8.91590 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.051181 B = 0.001980 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.949103 B =14135.870483 C =14306.881849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 H 0.074 0.926 4 C -0.099 4.099 5 C -0.076 4.076 6 C -0.090 4.090 7 C -0.133 4.133 8 C -0.129 4.129 9 C -0.138 4.138 10 C -0.129 4.129 11 C -0.132 4.132 12 C 0.062 3.938 13 N -0.688 5.688 14 C 0.072 3.928 15 C -0.092 4.092 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.343 0.657 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.051 0.949 43 H 0.052 0.948 44 H -0.010 1.010 45 H -0.010 1.010 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 1.321 -30.789 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.130 4.130 16 C -0.013 4.013 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.191 1.191 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.161 0.839 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.009 0.991 45 H 0.008 0.992 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.630 0.923 -30.632 30.689 hybrid contribution 0.987 0.189 1.050 1.454 sum -0.643 1.112 -29.582 29.609 Atomic orbital electron populations 1.21739 0.94457 1.01495 1.01719 1.21074 0.96777 0.99460 0.92511 0.90756 1.21488 1.00590 0.98978 0.92652 1.20639 1.01760 0.98426 0.90522 1.20132 0.94722 0.97185 0.96969 1.21309 0.95969 1.00769 0.97059 1.21440 1.00546 0.96700 0.96022 1.21448 0.94793 0.98518 1.00831 1.21443 0.96647 1.00029 0.96545 1.21308 1.00448 0.96854 0.96381 1.22058 0.97241 0.97743 0.89676 1.60459 1.64226 1.06031 1.01206 1.21813 0.96445 0.97885 0.89555 1.21371 1.00217 0.98257 0.93130 1.18979 0.94586 0.94915 0.92855 1.21683 1.35229 1.08947 0.92407 0.92153 1.26030 0.95068 0.96300 1.02668 1.70099 1.40221 1.23572 1.23532 0.85465 0.78972 0.78742 0.77650 1.19170 1.20768 1.19080 0.93497 0.92921 0.91754 0.92292 0.92135 0.90099 0.90504 0.85351 0.84653 0.84530 0.84595 0.85272 0.95617 0.91908 0.83854 0.92349 0.96173 0.93021 0.92887 0.99150 0.99159 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.84 71.98 0.64 -1.92 16 2 C -0.08 -1.45 2.53 -10.80 -0.03 -1.48 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.10 -1.59 4.66 30.59 0.14 -1.45 16 5 C -0.08 -1.08 5.10 29.85 0.15 -0.92 16 6 C -0.09 -1.44 5.13 -19.86 -0.10 -1.54 16 7 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 8 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 9 C -0.14 -1.89 10.05 22.27 0.22 -1.66 16 10 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 11 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 12 C 0.06 1.47 5.07 86.31 0.44 1.90 16 13 N -0.69 -19.58 5.96 -513.88 -3.06 -22.64 16 14 C 0.07 2.56 5.69 86.30 0.49 3.05 16 15 C -0.09 -3.90 5.41 30.59 0.17 -3.74 16 16 C 0.02 1.32 4.97 29.85 0.15 1.47 16 17 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 20 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 21 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 1.17 7.75 -2.39 -0.02 1.15 16 27 H 0.06 0.97 6.57 -2.38 -0.02 0.96 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.08 1.06 6.51 -2.39 -0.02 1.04 16 31 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.34 8.97 8.73 -89.69 -0.78 8.19 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 46 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -65.66 373.31 3.22 -62.45 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.13 Total: 15.37 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.84 Total: -44.50 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.78 Total: -80.29 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.66 3.22 -62.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344256987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.205 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds