Wall clock time and date at job start Mon Mar 30 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46758 * 2 1 4 4 N 1.46903 * 109.47144 * 175.44610 * 3 2 1 5 5 C 1.46903 * 110.99947 * 170.18684 * 4 3 2 6 6 C 1.52999 * 109.47036 * 288.87931 * 5 4 3 7 7 C 1.50707 * 109.47079 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99386 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00246 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99895 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00255 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46762 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47116 * 119.99794 * 11 9 7 14 14 H 1.48494 * 109.46958 * 240.00309 * 11 9 7 15 15 C 1.46893 * 111.00238 * 294.14236 * 4 3 2 16 16 H 1.09001 * 109.47057 * 87.36408 * 15 4 3 17 17 C 1.53000 * 109.47378 * 207.36213 * 15 4 3 18 18 C 1.53007 * 109.46889 * 294.27175 * 17 15 4 19 19 C 1.50696 * 109.47441 * 327.36311 * 15 4 3 20 20 C 1.38231 * 119.99797 * 311.47136 * 19 15 4 21 21 C 1.38236 * 119.99879 * 179.78692 * 20 19 15 22 22 C 1.38230 * 120.00117 * 0.43710 * 21 20 19 23 23 C 1.38233 * 120.00072 * 359.81382 * 22 21 20 24 24 C 1.38236 * 120.00065 * 131.73826 * 19 15 4 25 25 H 1.08994 * 109.47288 * 299.99818 * 1 2 3 26 26 H 1.09000 * 109.47309 * 60.00568 * 1 2 3 27 27 H 1.09009 * 109.46598 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47288 * 240.00181 * 2 1 3 29 29 H 1.09003 * 109.46987 * 119.99844 * 2 1 3 30 30 H 1.08996 * 109.47281 * 295.45078 * 3 2 1 31 31 H 1.09000 * 109.47507 * 55.45042 * 3 2 1 32 32 H 1.08996 * 109.47109 * 48.88298 * 5 4 3 33 33 H 1.08997 * 109.46808 * 168.88058 * 5 4 3 34 34 H 1.09002 * 109.47095 * 299.99895 * 6 5 4 35 35 H 1.08997 * 109.47219 * 60.00378 * 6 5 4 36 36 H 0.97006 * 120.00066 * 180.02562 * 10 9 7 37 37 H 1.08991 * 109.47036 * 54.26756 * 17 15 4 38 38 H 1.09003 * 109.47164 * 174.27171 * 17 15 4 39 39 H 1.09006 * 109.46776 * 184.03480 * 18 17 15 40 40 H 1.09005 * 109.47003 * 304.02979 * 18 17 15 41 41 H 1.08994 * 109.47243 * 64.03572 * 18 17 15 42 42 H 1.07996 * 120.00155 * 359.97438 * 20 19 15 43 43 H 1.08005 * 120.00383 * 180.27292 * 21 20 19 44 44 H 1.08002 * 120.00430 * 179.83716 * 22 21 20 45 45 H 1.08002 * 120.00692 * 180.02562 * 23 22 21 46 46 H 1.07994 * 120.00122 * 359.97438 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5048 1.4441 0.1100 5 6 4.0485 2.7894 -0.1194 6 6 3.9055 3.1518 -1.5989 7 6 4.4639 4.5317 -1.8344 8 1 4.8796 5.0937 -1.0110 9 6 4.4450 5.0762 -3.1008 10 7 3.9402 4.3912 -4.1036 11 14 5.1377 6.7863 -3.3928 12 1 5.6426 7.3411 -2.1112 13 1 6.2513 6.7087 -4.3721 14 1 4.0693 7.6685 -3.9268 15 6 3.9356 0.9170 1.4117 16 1 4.0276 -0.1675 1.3522 17 6 5.2896 1.5239 1.7848 18 6 6.3544 1.0409 0.7979 19 6 2.9169 1.2779 2.4619 20 6 2.4533 2.5766 2.5576 21 6 1.5156 2.9067 3.5181 22 6 1.0481 1.9401 4.3887 23 6 1.5155 0.6425 4.2963 24 6 2.4501 0.3114 3.3330 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7447 1.9323 -0.9279 31 1 1.6115 1.9794 0.8464 32 1 3.5002 3.5109 0.4861 33 1 5.1022 2.8076 0.1589 34 1 4.4539 2.4302 -2.2045 35 1 2.8518 3.1335 -1.8773 36 1 3.9272 4.7741 -4.9948 37 1 5.2239 2.6111 1.7450 38 1 5.5615 1.2130 2.7936 39 1 7.3310 1.4151 1.1051 40 1 6.3704 -0.0490 0.7853 41 1 6.1203 1.4125 -0.1997 42 1 2.8215 3.3328 1.8801 43 1 1.1500 3.9205 3.5902 44 1 0.3174 2.1985 5.1408 45 1 1.1500 -0.1130 4.9761 46 1 2.8152 -0.7024 3.2607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346569596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:15 Heat of formation + Delta-G solvation = 26.881009 kcal Electronic energy + Delta-G solvation = -22442.081102 eV Core-core repulsion = 19524.606075 eV Total energy + Delta-G solvation = -2917.475026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31304 -37.45949 -34.06166 -33.38846 -31.70378 -31.04894 -30.73646 -29.02035 -26.08858 -25.41166 -23.17914 -22.76765 -21.95495 -21.04244 -20.65847 -18.87630 -16.70493 -16.51303 -15.68429 -15.26006 -15.05696 -14.69985 -14.43428 -14.19953 -13.65823 -13.44264 -13.24347 -13.08761 -12.63332 -12.34951 -12.22602 -11.97209 -11.75375 -11.53797 -11.44273 -11.23271 -11.06418 -10.87215 -10.83084 -10.70688 -10.56870 -10.49823 -10.43425 -10.02431 -9.60214 -9.29278 -9.04342 -8.79028 -8.47449 -8.30022 -7.55284 -5.97374 -3.99583 1.45012 1.49382 3.31805 3.39506 3.42930 3.86198 4.41485 4.57219 4.85756 4.96825 5.06461 5.18708 5.23919 5.32706 5.38745 5.41976 5.44686 5.56815 5.60372 5.63967 5.78141 5.89945 5.99500 6.01789 6.07676 6.11146 6.12967 6.16901 6.25013 6.31766 6.37021 6.42255 6.49392 6.55247 6.62536 6.66956 6.68755 6.76527 6.80439 7.06397 7.11900 7.58941 7.65867 7.84565 7.95848 8.13383 8.46652 9.08427 9.64145 11.13901 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.005025 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.592351 B = 5570.661650 C = 5733.427747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.040 3.960 4 N -0.520 5.520 5 C 0.039 3.961 6 C 0.030 3.970 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.119 3.881 16 H 0.082 0.918 17 C -0.125 4.125 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.022 0.978 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.014 0.986 36 H 0.259 0.741 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 -8.615 15.098 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.088 4.088 4 N -0.243 5.243 5 C -0.087 4.087 6 C -0.007 4.007 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.011 3.989 16 H 0.100 0.900 17 C -0.162 4.162 18 C -0.208 4.208 19 C -0.093 4.093 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.134 4.134 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.765 -8.913 14.520 17.448 hybrid contribution -0.128 1.503 0.387 1.558 sum -3.892 -7.409 14.907 17.096 Atomic orbital electron populations 1.21702 0.96408 1.00887 1.01545 1.21469 0.94744 0.97334 1.01892 1.22476 0.87740 0.96542 1.02013 1.62530 1.09530 1.25842 1.26402 1.22870 0.99471 0.85617 1.00723 1.19073 0.97198 0.95699 0.88751 1.21229 1.39619 1.01129 0.93867 0.92878 1.24973 0.95497 0.97486 0.96259 1.69986 1.45743 1.37280 1.00156 0.86594 0.78787 0.84764 0.78194 1.19804 1.21019 1.21106 1.20940 0.91918 0.99841 0.86242 0.90001 1.21846 0.93990 1.01562 0.98828 1.21843 0.97236 1.00719 1.01033 1.20651 0.98381 0.93584 0.96691 1.21421 0.97238 0.96625 0.97953 1.21126 0.97823 0.99326 0.95759 1.21058 1.00509 0.93534 0.99545 1.21049 0.97966 0.96379 0.98867 1.20994 0.97777 0.98930 0.95678 0.93293 0.92747 0.93240 0.91688 0.92472 0.90198 0.93676 0.96040 0.89969 0.95823 0.96744 0.93122 0.90742 0.92383 0.93412 0.93148 0.90333 0.85122 0.86386 0.86671 0.86625 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.70 5.86 -26.73 -0.16 -1.86 16 3 C 0.04 0.68 4.22 -3.82 -0.02 0.66 16 4 N -0.52 -9.14 4.42 -228.05 -1.01 -10.14 16 5 C 0.04 0.79 3.06 -3.82 -0.01 0.78 16 6 C 0.03 0.77 5.02 -27.88 -0.14 0.63 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 11 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.12 1.75 1.86 -68.87 -0.13 1.62 16 16 H 0.08 1.16 7.59 -51.93 -0.39 0.77 16 17 C -0.12 -1.77 4.74 -26.73 -0.13 -1.90 16 18 C -0.15 -2.17 9.28 37.16 0.34 -1.82 16 19 C -0.09 -1.27 3.01 -104.63 -0.32 -1.58 16 20 C -0.11 -1.67 6.73 -39.58 -0.27 -1.94 16 21 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 22 C -0.13 -1.48 10.05 -39.59 -0.40 -1.88 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.12 -1.41 8.85 -39.58 -0.35 -1.76 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.79 5.78 -51.93 -0.30 0.49 16 30 H 0.08 1.57 6.36 -51.93 -0.33 1.24 16 31 H 0.05 0.76 4.44 -51.93 -0.23 0.53 16 32 H 0.02 0.44 5.27 -51.93 -0.27 0.17 16 33 H 0.08 1.63 3.80 -51.93 -0.20 1.43 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.01 0.39 6.57 -51.93 -0.34 0.05 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.15 5.98 -51.93 -0.31 0.84 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.35 6.31 -51.93 -0.33 1.02 16 42 H 0.13 2.12 4.84 -52.49 -0.25 1.87 16 43 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.12 1.25 7.98 -52.49 -0.42 0.83 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -29.32 346.07 -10.05 -39.37 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.57 Total: 2.67 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.40 Total: -27.61 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.27 Total: -36.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.32 -10.05 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346569596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.251 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds