Wall clock time and date at job start Mon Mar 30 2020 01:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46758 * 2 1 4 4 N 1.46903 * 109.47144 * 175.44610 * 3 2 1 5 5 C 1.46903 * 110.99947 * 170.18684 * 4 3 2 6 6 C 1.52999 * 109.47036 * 288.87931 * 5 4 3 7 7 C 1.50707 * 109.47079 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99386 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00246 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99895 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00255 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46762 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47116 * 119.99794 * 11 9 7 14 14 H 1.48494 * 109.46958 * 240.00309 * 11 9 7 15 15 C 1.46893 * 111.00238 * 294.14236 * 4 3 2 16 16 H 1.09001 * 109.47057 * 87.36408 * 15 4 3 17 17 C 1.53000 * 109.47378 * 207.36213 * 15 4 3 18 18 C 1.53007 * 109.46889 * 294.27175 * 17 15 4 19 19 C 1.50696 * 109.47441 * 327.36311 * 15 4 3 20 20 C 1.38231 * 119.99797 * 311.47136 * 19 15 4 21 21 C 1.38236 * 119.99879 * 179.78692 * 20 19 15 22 22 C 1.38230 * 120.00117 * 0.43710 * 21 20 19 23 23 C 1.38233 * 120.00072 * 359.81382 * 22 21 20 24 24 C 1.38236 * 120.00065 * 131.73826 * 19 15 4 25 25 H 1.08994 * 109.47288 * 299.99818 * 1 2 3 26 26 H 1.09000 * 109.47309 * 60.00568 * 1 2 3 27 27 H 1.09009 * 109.46598 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47288 * 240.00181 * 2 1 3 29 29 H 1.09003 * 109.46987 * 119.99844 * 2 1 3 30 30 H 1.08996 * 109.47281 * 295.45078 * 3 2 1 31 31 H 1.09000 * 109.47507 * 55.45042 * 3 2 1 32 32 H 1.08996 * 109.47109 * 48.88298 * 5 4 3 33 33 H 1.08997 * 109.46808 * 168.88058 * 5 4 3 34 34 H 1.09002 * 109.47095 * 299.99895 * 6 5 4 35 35 H 1.08997 * 109.47219 * 60.00378 * 6 5 4 36 36 H 0.97006 * 120.00066 * 180.02562 * 10 9 7 37 37 H 1.08991 * 109.47036 * 54.26756 * 17 15 4 38 38 H 1.09003 * 109.47164 * 174.27171 * 17 15 4 39 39 H 1.09006 * 109.46776 * 184.03480 * 18 17 15 40 40 H 1.09005 * 109.47003 * 304.02979 * 18 17 15 41 41 H 1.08994 * 109.47243 * 64.03572 * 18 17 15 42 42 H 1.07996 * 120.00155 * 359.97438 * 20 19 15 43 43 H 1.08005 * 120.00383 * 180.27292 * 21 20 19 44 44 H 1.08002 * 120.00430 * 179.83716 * 22 21 20 45 45 H 1.08002 * 120.00692 * 180.02562 * 23 22 21 46 46 H 1.07994 * 120.00122 * 359.97438 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5048 1.4441 0.1100 5 6 4.0485 2.7894 -0.1194 6 6 3.9055 3.1518 -1.5989 7 6 4.4639 4.5317 -1.8344 8 1 4.8796 5.0937 -1.0110 9 6 4.4450 5.0762 -3.1008 10 7 3.9402 4.3912 -4.1036 11 14 5.1377 6.7863 -3.3928 12 1 5.6426 7.3411 -2.1112 13 1 6.2513 6.7087 -4.3721 14 1 4.0693 7.6685 -3.9268 15 6 3.9356 0.9170 1.4117 16 1 4.0276 -0.1675 1.3522 17 6 5.2896 1.5239 1.7848 18 6 6.3544 1.0409 0.7979 19 6 2.9169 1.2779 2.4619 20 6 2.4533 2.5766 2.5576 21 6 1.5156 2.9067 3.5181 22 6 1.0481 1.9401 4.3887 23 6 1.5155 0.6425 4.2963 24 6 2.4501 0.3114 3.3330 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7447 1.9323 -0.9279 31 1 1.6115 1.9794 0.8464 32 1 3.5002 3.5109 0.4861 33 1 5.1022 2.8076 0.1589 34 1 4.4539 2.4302 -2.2045 35 1 2.8518 3.1335 -1.8773 36 1 3.9272 4.7741 -4.9948 37 1 5.2239 2.6111 1.7450 38 1 5.5615 1.2130 2.7936 39 1 7.3310 1.4151 1.1051 40 1 6.3704 -0.0490 0.7853 41 1 6.1203 1.4125 -0.1997 42 1 2.8215 3.3328 1.8801 43 1 1.1500 3.9205 3.5902 44 1 0.3174 2.1985 5.1408 45 1 1.1500 -0.1130 4.9761 46 1 2.8152 -0.7024 3.2607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346569596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:14 Heat of formation + Delta-G solvation = 11.613230 kcal Electronic energy + Delta-G solvation = -22442.743162 eV Core-core repulsion = 19524.606075 eV Total energy + Delta-G solvation = -2918.137087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48319 -38.62235 -35.42165 -35.26506 -33.28194 -32.16270 -31.75313 -30.65462 -27.31345 -27.11750 -24.80467 -23.86701 -23.05693 -22.29128 -22.14895 -20.18778 -18.57009 -17.77351 -17.17948 -16.43229 -16.33762 -16.23981 -15.85052 -15.52791 -14.94407 -14.60037 -14.33922 -14.24529 -14.16643 -14.04185 -13.48688 -13.34889 -13.18753 -12.88625 -12.81794 -12.66201 -12.45431 -12.43674 -12.23756 -12.04356 -11.88357 -11.78762 -11.69534 -11.42599 -11.34236 -11.16263 -11.02622 -10.51322 -9.77195 -9.48732 -8.97019 -8.18970 -6.29951 0.47800 0.53150 1.38905 1.39143 1.52306 2.39987 2.87274 3.14423 3.18469 3.78639 3.92187 4.05397 4.10004 4.13919 4.24409 4.27236 4.30485 4.45072 4.54112 4.56363 4.63537 4.70709 4.74594 4.78703 4.85267 4.87435 4.93166 5.03700 5.09481 5.13738 5.18105 5.19730 5.22906 5.32250 5.37233 5.42673 5.45039 5.55809 5.62237 5.66485 5.70104 5.77038 5.84515 6.15551 6.17158 6.40198 6.42550 6.88140 7.39150 8.93389 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.005025 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.592351 B = 5570.661650 C = 5733.427747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.044 3.956 4 N -0.530 5.530 5 C 0.060 3.940 6 C 0.041 3.959 7 C -0.539 4.539 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.122 3.878 16 H 0.095 0.905 17 C -0.121 4.121 18 C -0.147 4.147 19 C -0.101 4.101 20 C -0.136 4.136 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.088 0.912 34 H -0.010 1.010 35 H -0.016 1.016 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -9.410 17.751 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.083 4.083 4 N -0.252 5.252 5 C -0.066 4.066 6 C 0.003 3.997 7 C -0.577 4.577 8 H 0.076 0.924 9 C -0.195 4.195 10 N -0.572 5.572 11 Si 0.787 3.213 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.014 3.986 16 H 0.113 0.887 17 C -0.159 4.159 18 C -0.204 4.204 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.008 0.992 35 H 0.003 0.997 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.143 0.857 44 H 0.159 0.841 45 H 0.164 0.836 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.954 -9.715 17.191 20.138 hybrid contribution -0.105 1.702 -0.388 1.749 sum -4.059 -8.013 16.803 19.053 Atomic orbital electron populations 1.21662 0.94903 1.02232 1.01207 1.21408 0.95990 0.95189 1.02035 1.22415 0.87628 0.98205 1.00096 1.62430 1.09828 1.23831 1.29143 1.22477 1.00038 0.87405 0.96706 1.18884 0.94450 0.94374 0.91976 1.21634 1.39655 1.02112 0.94327 0.92375 1.25927 0.95683 1.01993 0.95926 1.70128 1.46947 1.39436 1.00718 0.85436 0.78118 0.79217 0.78504 1.18543 1.20299 1.20483 1.20974 0.92511 1.00175 0.84952 0.88687 1.21810 0.93724 1.00371 0.99956 1.21782 0.97962 1.01611 0.99053 1.20505 0.98707 0.93774 0.97261 1.21280 0.98801 0.96600 0.98745 1.21300 0.97586 1.00387 0.95770 1.21394 1.00399 0.93336 0.99280 1.21430 0.96868 0.96897 0.98526 1.21234 0.97670 0.99333 0.95212 0.92952 0.93796 0.90978 0.92781 0.90897 0.94176 0.93190 0.96321 0.89399 0.99204 0.99738 0.92876 0.92566 0.90047 0.92128 0.91648 0.93850 0.87873 0.85693 0.84054 0.83553 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.13 5.86 30.59 0.18 -2.95 16 3 C 0.04 1.57 4.22 86.30 0.36 1.94 16 4 N -0.53 -19.33 4.42 -875.41 -3.87 -23.20 16 5 C 0.06 2.60 3.06 86.30 0.26 2.86 16 6 C 0.04 2.23 5.02 29.85 0.15 2.38 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -58.11 13.29 21.44 0.28 -57.83 16 11 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 C 0.12 3.49 1.86 44.17 0.08 3.58 16 16 H 0.10 2.50 7.59 -2.39 -0.02 2.48 16 17 C -0.12 -3.35 4.74 30.60 0.14 -3.21 16 18 C -0.15 -4.15 9.28 71.98 0.67 -3.48 16 19 C -0.10 -2.66 3.01 -19.87 -0.06 -2.72 16 20 C -0.14 -3.96 6.73 22.27 0.15 -3.81 16 21 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 22 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.12 -2.46 8.85 22.27 0.20 -2.26 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.87 5.78 -2.39 -0.01 1.86 16 30 H 0.04 1.72 6.36 -2.39 -0.02 1.70 16 31 H 0.05 1.74 4.44 -2.39 -0.01 1.73 16 32 H 0.02 0.82 5.27 -2.39 -0.01 0.81 16 33 H 0.09 3.66 3.80 -2.39 -0.01 3.65 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H -0.02 -0.94 6.57 -2.39 -0.02 -0.96 16 36 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.06 1.76 5.98 -2.39 -0.01 1.75 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.04 1.53 6.31 -2.39 -0.02 1.51 16 42 H 0.10 3.53 4.84 -2.91 -0.01 3.51 16 43 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 45 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.14 2.34 7.98 -2.91 -0.02 2.31 16 Total: -1.00 -66.19 346.07 3.60 -62.59 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.94 Total: 19.65 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 4.22 Total: -48.28 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.58 Total: -81.03 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.19 3.60 -62.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346569596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.200 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds