Wall clock time and date at job start Mon Mar 30 2020 01:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47208 * 2 1 4 4 N 1.46904 * 109.47036 * 174.85209 * 3 2 1 5 5 C 1.46902 * 110.99724 * 198.01110 * 4 3 2 6 6 C 1.53000 * 109.46992 * 76.62812 * 5 4 3 7 7 C 1.50701 * 109.47387 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99522 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99978 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99848 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00337 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46975 * 89.99980 * 11 9 7 13 13 H 1.48497 * 109.47208 * 210.00357 * 11 9 7 14 14 H 1.48506 * 109.46886 * 330.00263 * 11 9 7 15 15 C 1.46894 * 111.00190 * 74.06097 * 4 3 2 16 16 H 1.09002 * 109.47275 * 296.17167 * 15 4 3 17 17 C 1.52997 * 109.47516 * 176.16744 * 15 4 3 18 18 C 1.53005 * 109.46668 * 52.72392 * 17 15 4 19 19 C 1.50703 * 109.47214 * 56.16419 * 15 4 3 20 20 C 1.38234 * 119.99886 * 62.19566 * 19 15 4 21 21 C 1.38234 * 120.00019 * 179.78935 * 20 19 15 22 22 C 1.38237 * 120.00189 * 0.43600 * 21 20 19 23 23 C 1.38232 * 119.99681 * 359.81015 * 22 21 20 24 24 C 1.38234 * 120.00332 * 242.46158 * 19 15 4 25 25 H 1.09007 * 109.46962 * 59.99765 * 1 2 3 26 26 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47203 * 300.00245 * 1 2 3 28 28 H 1.09003 * 109.47007 * 240.00203 * 2 1 3 29 29 H 1.08997 * 109.47036 * 120.00281 * 2 1 3 30 30 H 1.09000 * 109.47120 * 294.84824 * 3 2 1 31 31 H 1.08999 * 109.47390 * 54.84857 * 3 2 1 32 32 H 1.08997 * 109.47273 * 196.62239 * 5 4 3 33 33 H 1.08992 * 109.47388 * 316.62958 * 5 4 3 34 34 H 1.09007 * 109.47119 * 300.00065 * 6 5 4 35 35 H 1.08997 * 109.47508 * 59.99439 * 6 5 4 36 36 H 0.96991 * 120.00152 * 179.97438 * 10 9 7 37 37 H 1.08992 * 109.47553 * 172.72603 * 17 15 4 38 38 H 1.09006 * 109.46887 * 292.72806 * 17 15 4 39 39 H 1.09001 * 109.46843 * 184.65140 * 18 17 15 40 40 H 1.08993 * 109.47301 * 304.64862 * 18 17 15 41 41 H 1.09003 * 109.47071 * 64.65907 * 18 17 15 42 42 H 1.08005 * 119.99908 * 359.97438 * 20 19 15 43 43 H 1.08001 * 119.99801 * 180.27079 * 21 20 19 44 44 H 1.07994 * 120.00088 * 179.83848 * 22 21 20 45 45 H 1.07999 * 120.00021 * 180.02562 * 23 22 21 46 46 H 1.08004 * 119.99690 * 359.97438 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1243 5 6 3.9941 2.7613 0.5521 6 6 3.7375 2.9390 2.0500 7 6 4.2411 4.2898 2.4891 8 1 4.6987 4.9548 1.7717 9 6 4.1184 4.6762 3.8070 10 7 4.5574 5.8553 4.1901 11 14 3.3275 3.5257 5.0480 12 1 4.3707 2.6620 5.6572 13 1 2.6633 4.3237 6.1097 14 1 2.3196 2.6765 4.3634 15 6 4.1394 1.0291 -1.1332 16 1 3.8656 -0.0023 -1.3556 17 6 5.6595 1.1348 -0.9956 18 6 6.1132 0.3704 0.2497 19 6 3.6727 1.9248 -2.2517 20 6 3.9484 3.2788 -2.2136 21 6 3.5241 4.0998 -3.2417 22 6 2.8163 3.5682 -4.3035 23 6 2.5363 2.2150 -4.3391 24 6 2.9642 1.3933 -3.3131 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7540 1.9290 -0.9325 31 1 1.6033 1.9823 0.8402 32 1 5.0639 2.8320 0.3560 33 1 3.4709 3.5411 -0.0011 34 1 2.6676 2.8683 2.2463 35 1 4.2607 2.1592 2.6033 36 1 4.4708 6.1273 5.1171 37 1 6.1349 0.7067 -1.8780 38 1 5.9438 2.1830 -0.9022 39 1 7.1840 0.5140 0.3941 40 1 5.5758 0.7441 1.1212 41 1 5.9032 -0.6914 0.1208 42 1 4.4978 3.6949 -1.3820 43 1 3.7433 5.1569 -3.2140 44 1 2.4826 4.2100 -5.1054 45 1 1.9837 1.7995 -5.1688 46 1 2.7455 0.3360 -3.3409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346569599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:17 Heat of formation + Delta-G solvation = 16.486781 kcal Electronic energy + Delta-G solvation = -22402.686383 eV Core-core repulsion = 19484.760630 eV Total energy + Delta-G solvation = -2917.925754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12220 -37.48032 -34.14488 -33.40150 -31.81269 -31.03211 -30.67611 -29.52554 -26.06275 -25.74261 -23.19887 -22.60579 -21.87669 -21.23890 -20.35649 -19.09161 -16.81024 -16.55536 -15.87886 -15.35479 -15.17433 -14.60683 -14.33765 -14.00985 -13.78800 -13.49384 -13.28755 -13.22440 -12.70881 -12.53458 -12.33503 -12.19961 -11.72686 -11.66300 -11.60675 -11.34440 -11.20221 -10.90097 -10.83630 -10.77500 -10.64915 -10.46975 -10.18582 -9.98597 -9.64258 -9.59660 -9.15060 -8.79520 -8.59344 -8.49434 -7.74530 -6.02010 -3.99588 1.44859 1.51039 3.34493 3.41514 3.47175 3.87245 4.38756 4.48789 4.81408 4.95649 5.07906 5.16948 5.22071 5.26998 5.31522 5.33285 5.41981 5.50175 5.59434 5.64662 5.74109 5.80018 5.89394 5.95055 6.02928 6.06293 6.09468 6.12052 6.18514 6.22268 6.30670 6.35943 6.45042 6.49762 6.52732 6.56976 6.62893 6.75042 6.80752 6.86917 7.11509 7.24025 7.37929 7.66537 7.69915 7.89164 8.55665 9.02190 9.61242 11.11406 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.005785 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.305404 B = 4839.000021 C = 5269.504878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.050 3.950 4 N -0.522 5.522 5 C 0.054 3.946 6 C -0.004 4.004 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.068 3.932 10 N -0.905 5.905 11 Si 0.879 3.121 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.265 1.265 15 C 0.121 3.879 16 H 0.083 0.917 17 C -0.115 4.115 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.136 0.864 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -10.998 -15.029 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.078 4.078 4 N -0.244 5.244 5 C -0.072 4.072 6 C -0.042 4.042 7 C -0.557 4.557 8 H 0.087 0.913 9 C -0.133 4.133 10 N -0.544 5.544 11 Si 0.707 3.293 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.189 1.189 15 C 0.012 3.988 16 H 0.101 0.899 17 C -0.153 4.153 18 C -0.203 4.203 19 C -0.106 4.106 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.133 4.133 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.153 0.847 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.595 -11.229 -14.480 18.673 hybrid contribution -0.709 0.227 0.032 0.745 sum -4.304 -11.002 -14.448 18.663 Atomic orbital electron populations 1.21732 0.96269 1.01094 1.01695 1.21464 0.94787 0.97149 1.01940 1.22193 0.88226 0.96506 1.00907 1.62511 1.05169 1.30251 1.26493 1.22524 0.99651 0.86718 0.98352 1.19540 0.96533 0.96979 0.91117 1.21086 1.39373 1.00176 0.95084 0.91258 1.24980 0.95007 0.94951 0.98359 1.69915 1.47376 1.19880 1.17237 0.86778 0.80277 0.81137 0.81108 1.20278 1.21618 1.18926 1.20846 0.94723 0.97083 0.86161 0.89930 1.21670 0.93527 1.01506 0.98594 1.21705 1.00201 0.99372 0.99068 1.20753 0.98068 0.95189 0.96569 1.21562 0.99720 0.93373 0.98561 1.21198 0.98439 0.99877 0.94227 1.21096 0.99543 0.95320 0.98587 1.21060 1.00678 0.93958 0.98713 1.21027 0.98682 0.99423 0.94174 0.93169 0.93051 0.92666 0.92798 0.91315 0.94623 0.90519 0.90734 0.94651 0.96856 0.96331 0.92809 0.92318 0.91320 0.93633 0.90190 0.93542 0.84672 0.86196 0.86597 0.86625 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 3 C 0.05 0.78 4.63 -3.82 -0.02 0.76 16 4 N -0.52 -8.59 3.50 -228.04 -0.80 -9.39 16 5 C 0.05 1.05 2.31 -3.82 -0.01 1.04 16 6 C 0.00 -0.09 4.16 -27.88 -0.12 -0.21 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 11 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 15 C 0.12 1.69 2.19 -68.87 -0.15 1.54 16 16 H 0.08 1.08 6.79 -51.93 -0.35 0.73 16 17 C -0.12 -1.59 4.82 -26.73 -0.13 -1.71 16 18 C -0.15 -2.06 9.55 37.16 0.35 -1.71 16 19 C -0.10 -1.45 3.15 -104.62 -0.33 -1.77 16 20 C -0.11 -1.70 7.52 -39.58 -0.30 -1.99 16 21 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 23 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 24 C -0.11 -1.42 9.48 -39.58 -0.38 -1.79 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.65 7.14 -51.93 -0.37 0.28 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.57 6.37 -51.93 -0.33 0.24 16 31 H 0.08 1.37 6.57 -51.93 -0.34 1.03 16 32 H 0.07 1.45 4.75 -51.93 -0.25 1.20 16 33 H 0.04 0.72 5.80 -51.93 -0.30 0.42 16 34 H 0.01 0.32 5.86 -51.92 -0.30 0.02 16 35 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.02 5.35 -51.93 -0.28 0.75 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.34 6.59 -51.93 -0.34 1.00 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.14 2.19 4.74 -52.48 -0.25 1.94 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.24 7.95 -52.48 -0.42 0.82 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -29.90 347.53 -9.68 -39.58 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.74 Total: 2.16 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -2.48 Total: -27.78 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.02 Total: -36.55 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.90 -9.68 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346569599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.069 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds