Wall clock time and date at job start Mon Mar 30 2020 01:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47208 * 2 1 4 4 N 1.46904 * 109.47036 * 174.85209 * 3 2 1 5 5 C 1.46902 * 110.99724 * 198.01110 * 4 3 2 6 6 C 1.53000 * 109.46992 * 76.62812 * 5 4 3 7 7 C 1.50701 * 109.47387 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99522 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99978 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99848 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00337 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46975 * 89.99980 * 11 9 7 13 13 H 1.48497 * 109.47208 * 210.00357 * 11 9 7 14 14 H 1.48506 * 109.46886 * 330.00263 * 11 9 7 15 15 C 1.46894 * 111.00190 * 74.06097 * 4 3 2 16 16 H 1.09002 * 109.47275 * 296.17167 * 15 4 3 17 17 C 1.52997 * 109.47516 * 176.16744 * 15 4 3 18 18 C 1.53005 * 109.46668 * 52.72392 * 17 15 4 19 19 C 1.50703 * 109.47214 * 56.16419 * 15 4 3 20 20 C 1.38234 * 119.99886 * 62.19566 * 19 15 4 21 21 C 1.38234 * 120.00019 * 179.78935 * 20 19 15 22 22 C 1.38237 * 120.00189 * 0.43600 * 21 20 19 23 23 C 1.38232 * 119.99681 * 359.81015 * 22 21 20 24 24 C 1.38234 * 120.00332 * 242.46158 * 19 15 4 25 25 H 1.09007 * 109.46962 * 59.99765 * 1 2 3 26 26 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47203 * 300.00245 * 1 2 3 28 28 H 1.09003 * 109.47007 * 240.00203 * 2 1 3 29 29 H 1.08997 * 109.47036 * 120.00281 * 2 1 3 30 30 H 1.09000 * 109.47120 * 294.84824 * 3 2 1 31 31 H 1.08999 * 109.47390 * 54.84857 * 3 2 1 32 32 H 1.08997 * 109.47273 * 196.62239 * 5 4 3 33 33 H 1.08992 * 109.47388 * 316.62958 * 5 4 3 34 34 H 1.09007 * 109.47119 * 300.00065 * 6 5 4 35 35 H 1.08997 * 109.47508 * 59.99439 * 6 5 4 36 36 H 0.96991 * 120.00152 * 179.97438 * 10 9 7 37 37 H 1.08992 * 109.47553 * 172.72603 * 17 15 4 38 38 H 1.09006 * 109.46887 * 292.72806 * 17 15 4 39 39 H 1.09001 * 109.46843 * 184.65140 * 18 17 15 40 40 H 1.08993 * 109.47301 * 304.64862 * 18 17 15 41 41 H 1.09003 * 109.47071 * 64.65907 * 18 17 15 42 42 H 1.08005 * 119.99908 * 359.97438 * 20 19 15 43 43 H 1.08001 * 119.99801 * 180.27079 * 21 20 19 44 44 H 1.07994 * 120.00088 * 179.83848 * 22 21 20 45 45 H 1.07999 * 120.00021 * 180.02562 * 23 22 21 46 46 H 1.08004 * 119.99690 * 359.97438 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1243 5 6 3.9941 2.7613 0.5521 6 6 3.7375 2.9390 2.0500 7 6 4.2411 4.2898 2.4891 8 1 4.6987 4.9548 1.7717 9 6 4.1184 4.6762 3.8070 10 7 4.5574 5.8553 4.1901 11 14 3.3275 3.5257 5.0480 12 1 4.3707 2.6620 5.6572 13 1 2.6633 4.3237 6.1097 14 1 2.3196 2.6765 4.3634 15 6 4.1394 1.0291 -1.1332 16 1 3.8656 -0.0023 -1.3556 17 6 5.6595 1.1348 -0.9956 18 6 6.1132 0.3704 0.2497 19 6 3.6727 1.9248 -2.2517 20 6 3.9484 3.2788 -2.2136 21 6 3.5241 4.0998 -3.2417 22 6 2.8163 3.5682 -4.3035 23 6 2.5363 2.2150 -4.3391 24 6 2.9642 1.3933 -3.3131 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7540 1.9290 -0.9325 31 1 1.6033 1.9823 0.8402 32 1 5.0639 2.8320 0.3560 33 1 3.4709 3.5411 -0.0011 34 1 2.6676 2.8683 2.2463 35 1 4.2607 2.1592 2.6033 36 1 4.4708 6.1273 5.1171 37 1 6.1349 0.7067 -1.8780 38 1 5.9438 2.1830 -0.9022 39 1 7.1840 0.5140 0.3941 40 1 5.5758 0.7441 1.1212 41 1 5.9032 -0.6914 0.1208 42 1 4.4978 3.6949 -1.3820 43 1 3.7433 5.1569 -3.2140 44 1 2.4826 4.2100 -5.1054 45 1 1.9837 1.7995 -5.1688 46 1 2.7455 0.3360 -3.3409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346569599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:16 Heat of formation + Delta-G solvation = 1.042414 kcal Electronic energy + Delta-G solvation = -22403.356101 eV Core-core repulsion = 19484.760630 eV Total energy + Delta-G solvation = -2918.595472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25859 -38.62557 -35.38684 -35.22862 -33.47274 -32.11902 -31.73229 -31.05170 -27.38344 -27.16380 -24.62101 -23.84779 -22.90279 -22.34290 -21.96681 -20.33687 -18.92902 -17.62854 -17.18827 -16.59593 -16.27907 -16.12494 -15.70510 -15.45570 -15.08539 -14.67619 -14.63111 -14.30617 -14.21663 -14.09607 -13.46874 -13.33291 -13.30070 -12.96554 -12.83061 -12.66287 -12.47182 -12.22417 -12.11071 -11.91300 -11.89817 -11.82063 -11.70426 -11.49105 -11.45605 -11.21937 -11.05715 -10.74513 -9.79482 -9.61349 -9.09509 -8.29777 -6.32818 0.45128 0.51246 1.34919 1.35877 1.48977 2.35806 2.84171 3.06188 3.12878 3.76871 3.91195 4.08064 4.13592 4.17819 4.23729 4.29738 4.31767 4.41248 4.54092 4.59250 4.62279 4.66536 4.69849 4.74685 4.81120 4.89570 4.94089 5.01887 5.10373 5.13052 5.16751 5.19905 5.21405 5.29538 5.36845 5.38104 5.43506 5.54692 5.58559 5.63708 5.64645 5.67631 5.73367 6.14001 6.20094 6.30970 6.37653 6.74653 7.31847 8.86999 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.005785 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.305404 B = 4839.000021 C = 5269.504878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.052 3.948 4 N -0.523 5.523 5 C 0.074 3.926 6 C 0.004 3.996 7 C -0.527 4.527 8 H 0.031 0.969 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.948 3.052 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.252 1.252 15 C 0.124 3.876 16 H 0.104 0.896 17 C -0.114 4.114 18 C -0.142 4.142 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.114 4.114 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.010 0.990 35 H 0.018 0.982 36 H 0.266 0.734 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.147 0.853 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 -14.027 -16.642 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.076 4.076 4 N -0.245 5.245 5 C -0.053 4.053 6 C -0.034 4.034 7 C -0.566 4.566 8 H 0.049 0.951 9 C -0.188 4.188 10 N -0.591 5.591 11 Si 0.772 3.228 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.175 1.175 15 C 0.016 3.984 16 H 0.122 0.878 17 C -0.151 4.151 18 C -0.199 4.199 19 C -0.115 4.115 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.133 4.133 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.055 -14.269 -16.113 22.109 hybrid contribution -0.213 1.245 0.417 1.331 sum -5.268 -13.024 -15.695 21.065 Atomic orbital electron populations 1.21710 0.94983 1.02317 1.01454 1.21408 0.95827 0.94842 1.02438 1.22194 0.87518 0.98304 0.99572 1.62454 1.05838 1.27643 1.28528 1.22113 0.99371 0.88406 0.95411 1.19403 0.95719 0.94201 0.94028 1.21399 1.38868 1.01629 0.94659 0.95066 1.25913 0.95643 0.96612 1.00627 1.70061 1.49073 1.22008 1.17987 0.85688 0.79730 0.79081 0.78326 1.19091 1.20964 1.17540 1.20906 0.94509 0.97985 0.85004 0.87773 1.21658 0.93750 1.00369 0.99351 1.21645 1.00067 1.00332 0.97880 1.20707 0.98973 0.94480 0.97325 1.21459 1.00956 0.94515 0.98650 1.21353 0.99217 1.00091 0.94748 1.21415 0.98509 0.96230 0.98375 1.21457 0.99845 0.93569 0.99161 1.21309 0.97677 1.00780 0.93492 0.92673 0.91056 0.93719 0.90976 0.92021 0.94797 0.93259 0.91225 0.96092 0.97209 0.96370 0.92532 0.90174 0.93424 0.93219 0.93145 0.91678 0.87413 0.86042 0.84153 0.83478 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.11 -2.55 5.92 30.59 0.18 -2.37 16 3 C 0.05 1.60 4.63 86.30 0.40 2.00 16 4 N -0.52 -17.05 3.50 -875.40 -3.06 -20.11 16 5 C 0.07 3.03 2.31 86.30 0.20 3.22 16 6 C 0.00 0.21 4.16 29.85 0.12 0.34 16 7 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 8 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 11 Si 0.95 45.90 27.47 68.60 1.88 47.78 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 15 C 0.12 3.30 2.19 44.17 0.10 3.40 16 16 H 0.10 2.37 6.79 -2.39 -0.02 2.35 16 17 C -0.11 -3.04 4.82 30.59 0.15 -2.90 16 18 C -0.14 -3.87 9.55 71.98 0.69 -3.19 16 19 C -0.11 -3.01 3.15 -19.87 -0.06 -3.07 16 20 C -0.14 -4.20 7.52 22.27 0.17 -4.03 16 21 C -0.14 -3.67 10.05 22.27 0.22 -3.45 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 23 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 24 C -0.11 -2.46 9.48 22.27 0.21 -2.25 16 25 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.46 7.14 -2.39 -0.02 1.45 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.05 6.37 -2.39 -0.02 1.04 16 31 H 0.05 1.77 6.57 -2.39 -0.02 1.75 16 32 H 0.07 2.88 4.75 -2.39 -0.01 2.87 16 33 H 0.02 0.91 5.80 -2.39 -0.01 0.89 16 34 H 0.01 0.48 5.86 -2.38 -0.01 0.47 16 35 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.47 5.35 -2.38 -0.01 1.46 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.68 6.59 -2.39 -0.02 1.66 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 3.81 4.74 -2.91 -0.01 3.79 16 43 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.14 2.33 7.95 -2.91 -0.02 2.30 16 Total: -1.00 -66.89 347.53 4.25 -62.64 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.88 Total: 19.31 kcal Atomic # 6 Polarization: -53.51 SS G_CDS: 4.25 Total: -49.26 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.76 Total: -80.48 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Total: -66.89 4.25 -62.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346569599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.686 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds