Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47473 * 354.38229 * 3 2 1 5 5 C 1.36933 * 119.99575 * 276.34649 * 4 3 2 6 6 H 1.08000 * 119.99692 * 177.66722 * 5 4 3 7 7 C 1.38932 * 120.00218 * 357.67027 * 5 4 3 8 8 N 1.31450 * 120.00231 * 22.25284 * 7 5 4 9 9 Si 1.86798 * 120.00002 * 202.25646 * 7 5 4 10 10 H 1.48500 * 109.47515 * 59.99808 * 9 7 5 11 11 H 1.48504 * 109.47433 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46993 * 299.99726 * 9 7 5 13 13 C 1.34770 * 120.00175 * 96.35015 * 4 3 2 14 14 O 1.21814 * 119.99993 * 184.44894 * 13 4 3 15 15 C 1.46131 * 120.00094 * 4.44059 * 13 4 3 16 16 C 1.33646 * 122.22587 * 333.08452 * 15 13 4 17 17 S 1.75717 * 109.84107 * 180.02562 * 16 15 13 18 18 C 1.75948 * 91.06024 * 359.97438 * 17 16 15 19 19 C 1.36312 * 142.78073 * 180.02562 * 18 17 16 20 20 N 1.33740 * 107.81965 * 179.97438 * 19 18 17 21 21 C 1.30352 * 109.46505 * 359.97438 * 20 19 18 22 22 N 1.35922 * 109.83895 * 0.02562 * 18 17 16 23 23 H 1.08999 * 109.47052 * 234.37761 * 3 2 1 24 24 H 1.09004 * 109.47319 * 114.38235 * 3 2 1 25 25 H 0.96995 * 119.99897 * 179.97438 * 8 7 5 26 26 H 1.07998 * 125.07609 * 0.04007 * 16 15 13 27 27 H 1.08005 * 126.09212 * 359.97438 * 19 18 17 28 28 H 1.08001 * 125.57713 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3737 0.1352 5 6 3.2019 -1.9440 1.3757 6 1 3.5265 -2.9695 1.4727 7 6 2.8907 -1.2036 2.5093 8 7 2.1046 -0.1545 2.4138 9 14 3.5897 -1.6989 4.1693 10 1 5.0731 -1.6621 4.1128 11 1 3.1109 -0.7539 5.2100 12 1 3.1411 -3.0742 4.5048 13 6 3.4437 -2.0765 -0.9612 14 8 3.7729 -3.2447 -0.8569 15 6 3.4245 -1.4373 -2.2752 16 6 2.6207 -0.4069 -2.5548 17 16 2.8624 0.1038 -4.2186 18 6 4.0797 -1.1437 -4.4590 19 6 4.9339 -1.6626 -5.3859 20 7 5.5967 -2.6724 -4.8118 21 6 5.1992 -2.8069 -3.5776 22 7 4.2389 -1.8595 -3.3146 23 1 2.9710 0.5994 0.8354 24 1 2.9712 0.4251 -0.9360 25 1 1.8871 0.3622 3.2054 26 1 1.9264 0.0446 -1.8615 27 1 5.0540 -1.3194 -6.4029 28 1 5.5637 -3.5433 -2.8768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346795410.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = 121.965055 kcal Electronic energy + Delta-G solvation = -18674.493557 eV Core-core repulsion = 15627.429017 eV Total energy + Delta-G solvation = -3047.064539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.75362 -41.12707 -37.97515 -37.33041 -36.40114 -34.12682 -31.70790 -30.52672 -29.43431 -27.55906 -25.21966 -23.56148 -22.43405 -21.24925 -20.19354 -19.14719 -18.34762 -18.18519 -17.05901 -16.94206 -16.56982 -16.13707 -15.77558 -15.51588 -15.37301 -14.73083 -14.48057 -14.06674 -13.92779 -13.55309 -13.32527 -13.26265 -13.00022 -12.54320 -12.43519 -12.16431 -12.13213 -11.48044 -11.27022 -11.19705 -10.86878 -10.43751 -10.27697 -8.61003 -8.42851 -6.09251 -0.51700 0.10606 0.48423 0.73016 1.25224 1.40158 1.48137 1.56842 1.67007 1.85754 1.92365 2.16176 2.23460 2.73153 2.86386 3.34982 3.46663 3.65688 3.67907 3.94613 4.18460 4.21635 4.45470 4.84153 4.89582 5.31822 5.35415 5.67100 5.90523 6.15100 6.71892 6.73814 6.83505 7.01769 7.55785 8.36881 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.006473 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.436962 B = 4324.489619 C = 5202.682151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.253 3.747 3 C 0.179 3.821 4 N -0.412 5.412 5 C -0.339 4.339 6 H 0.096 0.904 7 C 0.017 3.983 8 N -0.872 5.872 9 Si 0.996 3.004 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.279 1.279 13 C 0.475 3.525 14 O -0.609 6.609 15 C 0.050 3.950 16 C -0.211 4.211 17 S 0.226 5.774 18 C -0.120 4.120 19 C 0.015 3.985 20 N -0.470 5.470 21 C 0.194 3.806 22 N -0.391 5.391 23 H 0.154 0.846 24 H 0.141 0.859 25 H 0.287 0.713 26 H 0.208 0.792 27 H 0.216 0.784 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 6.779 -8.085 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.065 4.065 3 C 0.053 3.947 4 N -0.128 5.128 5 C -0.466 4.466 6 H 0.114 0.886 7 C -0.188 4.188 8 N -0.510 5.510 9 Si 0.819 3.181 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.204 1.204 13 C 0.264 3.736 14 O -0.497 6.497 15 C -0.064 4.064 16 C -0.351 4.351 17 S 0.485 5.515 18 C -0.344 4.344 19 C -0.143 4.143 20 N -0.186 5.186 21 C -0.088 4.088 22 N -0.069 5.069 23 H 0.171 0.829 24 H 0.157 0.843 25 H 0.098 0.902 26 H 0.224 0.776 27 H 0.232 0.768 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.919 6.909 -8.979 11.491 hybrid contribution 0.383 -1.167 2.453 2.743 sum 2.302 5.743 -6.526 8.992 Atomic orbital electron populations 1.80985 1.14046 1.08706 1.12621 1.29273 0.95329 0.92167 0.89704 1.20254 0.80827 0.85858 1.07765 1.43616 1.52265 1.11521 1.05414 1.19836 1.45528 0.99991 0.81231 0.88649 1.26003 0.94244 0.95644 1.02919 1.69917 1.29082 1.18948 1.33004 0.84938 0.79191 0.78097 0.75906 1.18770 1.19405 1.20412 1.16930 0.87521 0.86416 0.82707 1.90696 1.56344 1.16973 1.85726 1.18719 0.97994 0.99157 0.90560 1.26704 1.04663 1.00429 1.03313 1.83987 1.34871 1.29947 1.02666 1.25099 1.11245 1.05381 0.92660 1.22373 0.95973 0.95529 1.00465 1.70210 1.25206 1.18197 1.04938 1.25564 0.91981 0.96031 0.95219 1.43897 1.28744 1.25623 1.08616 0.82914 0.84259 0.90192 0.77586 0.76775 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.77 18.54 20.00 0.37 -20.40 15 2 C 0.25 10.04 11.73 89.44 1.05 11.09 15 3 C 0.18 6.48 4.75 84.57 0.40 6.88 15 4 N -0.41 -18.29 2.60 -650.53 -1.69 -19.98 15 5 C -0.34 -16.48 9.44 84.06 0.79 -15.69 15 6 H 0.10 5.04 7.25 -2.91 -0.02 5.02 15 7 C 0.02 0.74 5.15 84.92 0.44 1.17 15 8 N -0.87 -38.04 8.69 21.66 0.19 -37.85 15 9 Si 1.00 36.53 29.61 68.60 2.03 38.57 15 10 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 12 H -0.28 -10.64 7.11 99.48 0.71 -9.93 15 13 C 0.48 21.46 7.50 86.29 0.65 22.11 15 14 O -0.61 -31.79 16.21 -4.71 -0.08 -31.86 15 15 C 0.05 1.86 6.40 39.07 0.25 2.11 15 16 C -0.21 -6.30 8.54 66.78 0.57 -5.73 15 17 S 0.23 5.26 23.33 -56.49 -1.32 3.94 15 18 C -0.12 -3.53 7.81 83.61 0.65 -2.88 15 19 C 0.01 0.40 11.93 83.95 1.00 1.40 15 20 N -0.47 -15.37 11.21 -197.62 -2.22 -17.59 15 21 C 0.19 6.84 12.59 179.53 2.26 9.10 15 22 N -0.39 -13.86 3.20 -344.98 -1.10 -14.97 15 23 H 0.15 5.60 5.87 -2.39 -0.01 5.59 15 24 H 0.14 3.99 4.26 -2.39 -0.01 3.98 15 25 H 0.29 11.85 8.31 -92.71 -0.77 11.08 15 26 H 0.21 6.00 3.39 -2.91 -0.01 5.99 15 27 H 0.22 4.04 8.06 -2.91 -0.02 4.01 15 28 H 0.21 7.32 8.04 -2.91 -0.02 7.30 15 Total: -1.00 -60.46 265.72 5.50 -54.96 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.25 Total: 15.60 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 8.06 Total: 29.58 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.45 Total: -110.78 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.08 Total: -31.86 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.32 Total: 3.94 kcal Total: -60.46 5.50 -54.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346795410.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.925 kcal (2) G-P(sol) polarization free energy of solvation -60.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds