Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48510 * 109.47164 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00218 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 C 1.50703 * 109.47212 * 164.72359 * 15 14 11 17 17 N 1.29021 * 124.91904 * 89.68981 * 16 15 14 18 18 C 1.31780 * 117.12561 * 179.81733 * 17 16 15 19 19 C 1.33636 * 114.50031 * 0.47343 * 18 17 16 20 20 S 1.70982 * 124.91374 * 269.99781 * 16 15 14 21 21 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 23 23 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 24 24 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 25 25 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 26 26 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 27 27 H 1.08996 * 109.46882 * 284.72133 * 15 14 11 28 28 H 1.08999 * 109.47498 * 44.72066 * 15 14 11 29 29 H 1.08000 * 122.75244 * 180.22712 * 18 17 16 30 30 H 1.08000 * 126.04197 * 179.72265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.4164 -6.5273 1.1478 16 6 4.1316 -7.8519 1.0756 17 7 5.2592 -8.0509 0.4810 18 6 5.7494 -9.2736 0.5160 19 6 4.9882 -10.1573 1.1684 20 16 3.5624 -9.3101 1.7633 21 1 -0.4850 0.8402 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8725 -3.6047 0.8878 25 1 2.8712 -3.6040 -0.8922 26 1 2.6168 -6.9855 -0.7650 27 1 4.1472 -5.7187 1.1359 28 1 2.8351 -6.4781 2.0686 29 1 6.6873 -9.5406 0.0518 30 1 5.2079 -11.2057 1.3062 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348099129.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -33.736043 kcal Electronic energy + Delta-G solvation = -16598.332843 eV Core-core repulsion = 13647.667798 eV Total energy + Delta-G solvation = -2950.665045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95078 -36.67514 -35.62855 -35.37075 -33.89868 -31.17039 -30.72259 -27.28255 -25.60905 -23.95722 -21.69250 -20.28580 -19.13946 -18.51706 -17.44447 -16.62261 -16.26136 -15.72033 -15.42613 -14.89513 -14.57323 -14.50769 -14.29400 -13.45397 -13.24929 -13.06112 -12.50300 -11.77017 -11.76525 -11.74533 -11.64763 -11.56604 -11.06429 -10.97660 -10.46460 -10.38131 -10.02534 -9.82422 -9.72131 -9.56501 -9.27218 -9.06837 -8.49809 -6.12271 -4.17939 0.28861 0.76411 1.06468 1.46496 2.48721 3.14159 3.28062 3.32887 3.34756 3.75810 4.19497 4.37844 4.60930 4.65880 4.86179 5.10511 5.17332 5.22979 5.29657 5.50371 5.63959 5.80084 5.84122 6.47475 6.92976 7.29450 7.35444 7.41992 7.80658 8.17241 8.85316 9.46917 10.98699 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.003899 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.933929 B = 7179.307065 C = 7666.654707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.592 3.408 12 O -0.962 6.962 13 O -0.964 6.964 14 N -1.124 6.124 15 C 0.194 3.806 16 C 0.037 3.963 17 N -0.460 5.460 18 C 0.037 3.963 19 C -0.261 4.261 20 S 0.150 5.850 21 H 0.266 0.734 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.416 0.584 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.177 0.823 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.051 -19.166 3.247 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.722 4.722 11 S 2.690 3.310 12 O -0.952 6.952 13 O -0.954 6.954 14 N -0.881 5.881 15 C 0.064 3.936 16 C -0.242 4.242 17 N -0.175 5.175 18 C -0.115 4.115 19 C -0.401 4.401 20 S 0.403 5.597 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.249 0.751 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.194 0.806 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.289 -18.967 3.735 21.033 hybrid contribution 2.073 0.585 -0.781 2.291 sum 10.362 -18.382 2.954 21.307 Atomic orbital electron populations 1.69949 1.06115 1.27322 1.49483 1.25064 0.94976 0.99541 0.94879 0.86521 0.79481 0.82493 0.78722 1.20073 1.21095 1.20068 1.20969 0.93069 0.89749 1.52286 0.92029 1.18977 0.92690 0.90512 0.98973 1.30444 1.13717 1.17643 1.10348 1.05664 0.74518 0.76588 0.74241 1.93567 1.71240 1.85269 1.45154 1.93544 1.71272 1.84987 1.45603 1.55918 1.52592 1.52906 1.26712 1.19763 0.92449 0.91060 0.90304 1.27020 0.95604 1.00627 1.00957 1.66294 1.10546 1.22378 1.18328 1.21853 1.01885 0.86862 1.00917 1.27231 0.99060 1.05700 1.08119 1.84270 1.21833 1.02330 1.51310 0.92467 0.94779 0.94723 0.86145 0.85829 0.75123 0.88363 0.87901 0.80573 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.85 6.02 37.16 0.22 -10.63 16 11 S 2.59 44.51 5.46 -107.50 -0.59 43.92 16 12 O -0.96 -19.54 18.08 -57.54 -1.04 -20.58 16 13 O -0.96 -18.94 17.49 -57.54 -1.01 -19.95 16 14 N -1.12 -14.45 5.88 -11.66 -0.07 -14.52 16 15 C 0.19 2.19 6.72 -5.19 -0.03 2.16 16 16 C 0.04 0.41 6.78 -13.46 -0.09 0.31 16 17 N -0.46 -5.31 10.54 -11.86 -0.13 -5.44 16 18 C 0.04 0.33 11.35 -19.19 -0.22 0.11 16 19 C -0.26 -1.99 11.37 29.12 0.33 -1.66 16 20 S 0.15 1.36 23.18 -107.50 -2.49 -1.14 16 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 25 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 26 H 0.42 4.84 8.61 -34.47 -0.30 4.55 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.08 7.68 -51.93 -0.40 0.68 16 29 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 295.71 15.07 4.46 4.46 Total: -1.00 -35.08 295.71 -8.68 -43.76 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.20 Total: 1.19 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -0.34 Total: -22.20 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.54 Total: -45.56 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -2.05 Total: -40.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 45.87 SS G_CDS: -3.08 Total: 42.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.08 -8.68 -43.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348099129.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.022 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds