Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48510 * 109.47164 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00218 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 C 1.50703 * 109.47212 * 164.72359 * 15 14 11 17 17 N 1.29021 * 124.91904 * 89.68981 * 16 15 14 18 18 C 1.31780 * 117.12561 * 179.81733 * 17 16 15 19 19 C 1.33636 * 114.50031 * 0.47343 * 18 17 16 20 20 S 1.70982 * 124.91374 * 269.99781 * 16 15 14 21 21 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 23 23 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 24 24 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 25 25 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 26 26 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 27 27 H 1.08996 * 109.46882 * 284.72133 * 15 14 11 28 28 H 1.08999 * 109.47498 * 44.72066 * 15 14 11 29 29 H 1.08000 * 122.75244 * 180.22712 * 18 17 16 30 30 H 1.08000 * 126.04197 * 179.72265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.4164 -6.5273 1.1478 16 6 4.1316 -7.8519 1.0756 17 7 5.2592 -8.0509 0.4810 18 6 5.7494 -9.2736 0.5160 19 6 4.9882 -10.1573 1.1684 20 16 3.5624 -9.3101 1.7633 21 1 -0.4850 0.8402 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8725 -3.6047 0.8878 25 1 2.8712 -3.6040 -0.8922 26 1 2.6168 -6.9855 -0.7650 27 1 4.1472 -5.7187 1.1359 28 1 2.8351 -6.4781 2.0686 29 1 6.6873 -9.5406 0.0518 30 1 5.2079 -11.2057 1.3062 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348099129.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -61.665996 kcal Electronic energy + Delta-G solvation = -16599.543977 eV Core-core repulsion = 13647.667798 eV Total energy + Delta-G solvation = -2951.876179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66723 -38.19211 -37.05806 -36.48070 -35.86970 -33.10286 -31.49606 -28.11526 -27.56988 -24.72352 -23.57983 -21.00231 -20.42984 -19.45921 -18.98876 -18.16737 -17.48749 -17.05448 -16.53689 -16.42689 -16.07938 -15.33887 -15.24461 -14.98745 -14.45648 -14.14068 -13.85721 -13.68408 -13.21452 -13.12329 -13.05800 -12.88658 -12.77761 -12.40771 -12.20017 -12.15482 -11.72780 -11.22970 -10.77059 -10.61607 -10.44736 -10.41290 -9.94955 -8.23966 -6.37599 -0.78078 -0.29270 0.37685 0.79292 1.42692 1.45825 1.53892 1.65983 2.01609 2.39928 2.78228 3.00063 3.09686 3.30066 3.79624 4.04399 4.14910 4.34019 4.39286 4.45836 4.56307 4.64047 4.80348 5.19873 5.30590 5.31965 5.70845 5.92397 6.08908 6.71895 6.76078 7.32484 8.88013 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.003899 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.933929 B = 7179.307065 C = 7666.654707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.019 3.981 10 C -0.588 4.588 11 S 2.625 3.375 12 O -0.995 6.995 13 O -0.989 6.989 14 N -1.107 6.107 15 C 0.184 3.816 16 C 0.012 3.988 17 N -0.481 5.481 18 C 0.016 3.984 19 C -0.241 4.241 20 S 0.154 5.846 21 H 0.267 0.733 22 H 0.007 0.993 23 H 0.011 0.989 24 H 0.147 0.853 25 H 0.143 0.857 26 H 0.424 0.576 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.200 0.800 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 -20.208 3.552 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.020 4.020 10 C -0.720 4.720 11 S 2.722 3.278 12 O -0.986 6.986 13 O -0.979 6.979 14 N -0.868 5.868 15 C 0.055 3.945 16 C -0.266 4.266 17 N -0.197 5.197 18 C -0.134 4.134 19 C -0.380 4.380 20 S 0.407 5.593 21 H 0.076 0.924 22 H 0.025 0.975 23 H 0.029 0.971 24 H 0.165 0.835 25 H 0.161 0.839 26 H 0.259 0.741 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.217 0.783 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.591 -20.010 4.036 22.997 hybrid contribution 1.412 0.744 -0.852 1.809 sum 12.003 -19.266 3.184 22.921 Atomic orbital electron populations 1.70097 1.08021 1.28340 1.50909 1.26093 0.95840 1.03802 0.94439 0.85385 0.78139 0.77429 0.79422 1.18943 1.21054 1.18718 1.21506 0.94025 0.90838 1.51489 0.90590 1.18842 0.93647 0.92949 0.96590 1.30344 1.12827 1.16132 1.12696 1.04406 0.74300 0.76261 0.72827 1.93516 1.72675 1.85761 1.46599 1.93509 1.72381 1.85351 1.46643 1.55413 1.52134 1.51460 1.27788 1.19993 0.92556 0.92383 0.89554 1.26851 0.96119 1.01013 1.02568 1.66281 1.10872 1.23935 1.18636 1.22260 1.03064 0.86334 1.01760 1.27631 0.97468 1.06895 1.06016 1.84264 1.22482 1.01660 1.50915 0.92422 0.97511 0.97063 0.83472 0.83932 0.74091 0.86984 0.87292 0.78344 0.77248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 0.96 4.98 29.85 0.15 1.11 16 10 C -0.59 -21.34 6.02 71.98 0.43 -20.91 16 11 S 2.63 89.65 5.46 -56.49 -0.31 89.34 16 12 O -1.00 -40.79 18.08 -127.65 -2.31 -43.10 16 13 O -0.99 -38.93 17.49 -127.65 -2.23 -41.16 16 14 N -1.11 -27.14 5.88 -190.79 -1.12 -28.26 16 15 C 0.18 3.89 6.72 85.63 0.58 4.46 16 16 C 0.01 0.25 6.78 88.52 0.60 0.85 16 17 N -0.48 -10.20 10.54 -191.45 -2.02 -12.22 16 18 C 0.02 0.25 11.35 83.66 0.95 1.20 16 19 C -0.24 -2.93 11.37 66.78 0.76 -2.17 16 20 S 0.15 2.50 23.18 -56.49 -1.31 1.19 16 21 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.15 4.49 8.14 -2.39 -0.02 4.47 16 25 H 0.14 4.60 8.14 -2.39 -0.02 4.59 16 26 H 0.42 9.34 8.61 -96.74 -0.83 8.51 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.11 2.15 7.68 -2.39 -0.02 2.13 16 29 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -76.19 295.71 -2.49 -78.68 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.33 Total: 11.25 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 4.16 Total: -44.55 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -2.85 Total: -96.78 kcal Atomic # 8 Polarization: -79.72 SS G_CDS: -4.54 Total: -84.26 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 92.15 SS G_CDS: -1.62 Total: 90.53 kcal Total: -76.19 -2.49 -78.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348099129.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.018 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds